Wall clock time and date at job start Sat Apr 11 2020 06:20:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 119.99953 * 2 1 4 4 H 1.48504 * 109.47031 * 269.99786 * 3 2 1 5 5 H 1.48494 * 109.47217 * 29.99835 * 3 2 1 6 6 H 1.48499 * 109.47015 * 149.99906 * 3 2 1 7 7 C 1.37878 * 119.99947 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00021 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00117 * 359.97438 * 7 2 1 10 10 N 1.46896 * 109.47164 * 179.97438 * 9 7 2 11 11 C 1.46894 * 111.00156 * 170.00026 * 10 9 7 12 12 C 1.53239 * 109.34490 * 187.25482 * 11 10 9 13 13 N 1.47077 * 108.52003 * 306.17175 * 12 11 10 14 14 C 1.34770 * 120.88219 * 231.18256 * 13 12 11 15 15 O 1.21554 * 120.00105 * 5.79429 * 14 13 12 16 16 C 1.47865 * 120.00013 * 185.79164 * 14 13 12 17 17 C 1.39615 * 120.11318 * 219.29916 * 16 14 13 18 18 C 1.37973 * 119.99011 * 179.97438 * 17 16 14 19 19 C 1.38264 * 120.21314 * 0.02562 * 18 17 16 20 20 C 1.38913 * 120.23145 * 359.97438 * 19 18 17 21 21 N 1.40216 * 120.00006 * 179.97438 * 20 19 18 22 22 C 1.34729 * 126.83961 * 4.99646 * 21 20 19 23 23 N 1.30853 * 108.03187 * 180.02562 * 22 21 20 24 24 C 1.33262 * 109.84497 * 0.02562 * 23 22 21 25 25 N 1.30751 * 108.99807 * 0.23040 * 24 23 22 26 26 C 1.38603 * 120.00414 * 0.27017 * 20 19 18 27 27 C 1.47078 * 118.23516 * 51.45494 * 13 12 11 28 28 C 1.46894 * 111.00080 * 294.30638 * 10 9 7 29 29 H 0.96997 * 120.00399 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.46687 * 60.00564 * 9 7 2 31 31 H 1.08998 * 109.47351 * 300.00715 * 9 7 2 32 32 H 1.09010 * 109.49074 * 67.29595 * 11 10 9 33 33 H 1.09001 * 109.51708 * 307.23105 * 11 10 9 34 34 H 1.08995 * 109.63137 * 186.45897 * 12 11 10 35 35 H 1.09001 * 109.62650 * 65.88288 * 12 11 10 36 36 H 1.08007 * 120.00803 * 0.02562 * 17 16 14 37 37 H 1.07996 * 119.89387 * 180.02562 * 18 17 16 38 38 H 1.08000 * 119.88670 * 179.97438 * 19 18 17 39 39 H 1.08002 * 125.98286 * 359.97438 * 22 21 20 40 40 H 1.07998 * 125.49864 * 179.97438 * 24 23 22 41 41 H 1.07999 * 120.10237 * 179.70299 * 26 20 19 42 42 H 1.09005 * 109.62836 * 68.25545 * 27 13 12 43 43 H 1.09001 * 109.62807 * 188.83086 * 27 13 12 44 44 H 1.08996 * 109.49367 * 292.70226 * 28 10 9 45 45 H 1.08998 * 109.49800 * 52.78720 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5466 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2056 -3.6157 -0.0018 11 6 1.5214 -4.8936 0.2363 12 6 2.5640 -6.0034 0.4079 13 7 3.4610 -5.9860 -0.7576 14 6 3.7108 -7.1117 -1.4552 15 8 3.1126 -8.1362 -1.1903 16 6 4.7125 -7.1006 -2.5428 17 6 4.4754 -7.8115 -3.7207 18 6 5.4116 -7.7990 -4.7342 19 6 6.5861 -7.0843 -4.5876 20 6 6.8313 -6.3738 -3.4194 21 7 8.0242 -5.6511 -3.2757 22 6 8.9789 -5.4739 -4.2097 23 7 9.9284 -4.7424 -3.6847 24 6 9.6189 -4.4352 -2.4255 25 7 8.4651 -4.9731 -2.1274 26 6 5.8995 -6.3841 -2.3933 27 6 4.0828 -4.7085 -1.1380 28 6 2.9757 -3.6485 -1.2522 29 1 -0.4850 0.8400 -0.0004 30 1 0.6241 -2.5567 -0.8904 31 1 0.6246 -2.5571 0.8896 32 1 0.8791 -5.1261 -0.6132 33 1 0.9165 -4.8200 1.1401 34 1 2.0635 -6.9696 0.4702 35 1 3.1403 -5.8272 1.3161 36 1 3.5589 -8.3706 -3.8390 37 1 5.2264 -8.3492 -5.6448 38 1 7.3155 -7.0785 -5.3840 39 1 8.9636 -5.8676 -5.2153 40 1 10.2254 -3.8415 -1.7576 41 1 6.0906 -5.8361 -1.4825 42 1 4.8024 -4.4102 -0.3755 43 1 4.5870 -4.8183 -2.0981 44 1 2.3133 -3.8983 -2.0809 45 1 3.4261 -2.6716 -1.4278 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602205654.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:32 Heat of formation + Delta-G solvation = 113.737346 kcal Electronic energy + Delta-G solvation = -29203.823454 eV Core-core repulsion = 25224.135882 eV Total energy + Delta-G solvation = -3979.687572 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 3.32 seconds Orbital eigenvalues (eV) -42.66724 -40.67767 -38.97646 -37.52363 -34.57932 -34.52398 -32.67770 -32.10051 -31.53324 -30.48112 -29.88617 -28.30838 -25.87746 -24.61323 -24.19439 -23.41620 -22.52071 -21.70741 -21.57948 -20.66040 -19.49746 -18.09016 -17.01438 -16.68701 -16.46784 -16.28746 -16.21791 -15.60426 -15.36014 -14.98052 -14.68830 -14.59292 -14.42393 -14.23310 -13.82552 -13.73924 -13.59994 -13.41350 -12.86106 -12.69111 -12.31602 -12.21175 -11.94338 -11.86251 -11.34092 -11.24435 -11.12160 -11.00715 -10.79582 -10.66896 -10.58486 -10.47398 -10.24492 -10.00198 -9.90323 -9.40033 -9.29529 -8.83497 -8.58736 -8.48345 -7.37853 -6.09065 -4.11233 0.22569 0.56867 1.56396 1.76863 2.53416 2.60617 2.92382 3.27479 3.34359 3.35755 3.38319 3.84454 3.93011 4.23058 4.36412 4.39288 4.51114 4.55528 4.71523 4.76178 4.91584 5.04990 5.18301 5.26283 5.32461 5.33755 5.47005 5.54058 5.59971 5.68798 5.77203 5.79107 5.89708 5.94124 5.95647 5.99619 6.12984 6.22908 6.38647 6.41425 6.54999 6.59191 7.17296 7.23682 7.39207 7.61831 7.70824 7.97024 8.05674 8.08104 8.43552 8.95895 9.53531 11.01741 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009487 B = 0.003326 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2950.622240 B = 8416.641301 C =10573.332392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.057 3.943 3 Si 0.897 3.103 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.510 4.510 8 H 0.064 0.936 9 C 0.194 3.806 10 N -0.535 5.535 11 C 0.041 3.959 12 C 0.118 3.882 13 N -0.598 5.598 14 C 0.558 3.442 15 O -0.540 6.540 16 C -0.100 4.100 17 C -0.068 4.068 18 C -0.098 4.098 19 C -0.115 4.115 20 C 0.141 3.859 21 N -0.329 5.329 22 C 0.260 3.740 23 N -0.537 5.537 24 C 0.208 3.792 25 N -0.308 5.308 26 C -0.080 4.080 27 C 0.101 3.899 28 C 0.052 3.948 29 H 0.262 0.738 30 H -0.009 1.009 31 H 0.033 0.967 32 H 0.027 0.973 33 H 0.083 0.917 34 H 0.090 0.910 35 H 0.076 0.924 36 H 0.140 0.860 37 H 0.143 0.857 38 H 0.136 0.864 39 H 0.222 0.778 40 H 0.224 0.776 41 H 0.151 0.849 42 H 0.080 0.920 43 H 0.084 0.916 44 H 0.026 0.974 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.882 -15.297 -10.327 23.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.725 3.275 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.549 4.549 8 H 0.082 0.918 9 C 0.069 3.931 10 N -0.261 5.261 11 C -0.088 4.088 12 C -0.004 4.004 13 N -0.329 5.329 14 C 0.345 3.655 15 O -0.419 6.419 16 C -0.104 4.104 17 C -0.088 4.088 18 C -0.116 4.116 19 C -0.136 4.136 20 C 0.048 3.952 21 N -0.114 5.114 22 C -0.035 4.035 23 N -0.263 5.263 24 C -0.094 4.094 25 N -0.133 5.133 26 C -0.101 4.101 27 C -0.021 4.021 28 C -0.078 4.078 29 H 0.072 0.928 30 H 0.009 0.991 31 H 0.051 0.949 32 H 0.046 0.954 33 H 0.101 0.899 34 H 0.109 0.891 35 H 0.095 0.905 36 H 0.158 0.842 37 H 0.161 0.839 38 H 0.154 0.846 39 H 0.239 0.761 40 H 0.240 0.760 41 H 0.168 0.832 42 H 0.098 0.902 43 H 0.102 0.898 44 H 0.044 0.956 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 14.688 -15.422 -9.214 23.205 hybrid contribution -0.222 0.930 -0.846 1.277 sum 14.466 -14.491 -10.060 22.814 Atomic orbital electron populations 1.69952 1.06097 1.26898 1.50720 1.24985 0.94852 0.99346 0.95310 0.86507 0.79860 0.83074 0.78058 1.20737 1.21196 1.19698 1.21132 0.93459 0.89860 1.50451 0.91819 1.19727 0.89963 0.87122 0.96261 1.62081 1.28159 1.02745 1.33068 1.22405 0.94889 0.90462 1.01092 1.21837 0.91745 0.99809 0.87047 1.48153 1.46451 1.08362 1.29981 1.18179 0.82157 0.83540 0.81597 1.90773 1.50828 1.31891 1.68396 1.19875 0.94990 0.99484 0.96013 1.21352 0.99887 0.96100 0.91435 1.20953 0.92523 0.98697 0.99459 1.20967 0.99141 0.97619 0.95825 1.17373 0.84756 0.96579 0.96484 1.47749 1.15590 1.38066 1.09968 1.26194 0.84470 0.95536 0.97322 1.70642 1.27949 1.18177 1.09521 1.26225 0.92401 0.98147 0.92653 1.78232 1.15360 1.14363 1.05360 1.21254 0.91845 0.97810 0.99176 1.22453 0.96491 0.82427 1.00750 1.22406 0.94967 0.98930 0.91449 0.92840 0.99108 0.94940 0.95432 0.89859 0.89139 0.90549 0.84172 0.83897 0.84582 0.76132 0.75951 0.83181 0.90201 0.89836 0.95630 0.88425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.21 13.29 55.43 0.74 -25.48 16 2 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 3 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.51 -13.87 8.41 -34.44 -0.29 -14.16 16 8 H 0.06 1.70 7.13 -52.49 -0.37 1.33 16 9 C 0.19 4.90 4.72 -4.98 -0.02 4.88 16 10 N -0.54 -11.05 4.62 -235.47 -1.09 -12.13 16 11 C 0.04 0.72 5.62 -3.70 -0.02 0.70 16 12 C 0.12 1.80 6.61 -3.60 -0.02 1.78 16 13 N -0.60 -9.03 3.00 -173.29 -0.52 -9.55 16 14 C 0.56 8.33 7.34 -12.32 -0.09 8.24 16 15 O -0.54 -9.44 16.37 5.32 0.09 -9.36 16 16 C -0.10 -1.20 5.14 -104.99 -0.54 -1.74 16 17 C -0.07 -0.65 9.63 -39.16 -0.38 -1.03 16 18 C -0.10 -0.65 10.02 -39.67 -0.40 -1.05 16 19 C -0.11 -0.76 9.47 -39.32 -0.37 -1.14 16 20 C 0.14 1.36 6.68 -83.64 -0.56 0.80 16 21 N -0.33 -3.35 3.82 -11.84 -0.05 -3.40 16 22 C 0.26 2.12 11.97 -90.37 -1.08 1.04 16 23 N -0.54 -5.46 11.19 -15.74 -0.18 -5.63 16 24 C 0.21 2.07 13.03 -91.76 -1.20 0.88 16 25 N -0.31 -3.63 12.06 29.30 0.35 -3.28 16 26 C -0.08 -0.91 7.04 -38.99 -0.27 -1.18 16 27 C 0.10 1.50 5.02 -3.36 -0.02 1.48 16 28 C 0.05 0.95 5.47 -3.46 -0.02 0.93 16 29 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 30 H -0.01 -0.24 8.12 -51.93 -0.42 -0.67 16 31 H 0.03 0.88 7.97 -51.93 -0.41 0.46 16 32 H 0.03 0.51 8.14 -51.92 -0.42 0.08 16 33 H 0.08 1.42 7.99 -51.93 -0.41 1.00 16 34 H 0.09 1.35 7.04 -51.93 -0.37 0.99 16 35 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.14 1.27 8.05 -52.48 -0.42 0.85 16 37 H 0.14 0.52 8.06 -52.49 -0.42 0.10 16 38 H 0.14 0.44 6.82 -52.49 -0.36 0.08 16 39 H 0.22 0.73 7.12 -52.49 -0.37 0.35 16 40 H 0.22 1.42 8.06 -52.49 -0.42 1.00 16 41 H 0.15 1.85 6.16 -52.49 -0.32 1.53 16 42 H 0.08 1.17 8.05 -51.93 -0.42 0.75 16 43 H 0.08 1.10 4.88 -51.93 -0.25 0.85 16 44 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 45 H 0.10 1.92 6.67 -51.93 -0.35 1.57 16 LS Contribution 371.70 15.07 5.60 5.60 Total: -1.00 -34.43 371.70 -11.19 -45.61 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: -5.73 Total: -0.46 kcal Atomic # 6 Polarization: 7.28 SS G_CDS: -5.38 Total: 1.90 kcal Atomic # 7 Polarization: -58.73 SS G_CDS: -0.74 Total: -59.47 kcal Atomic # 8 Polarization: -9.44 SS G_CDS: 0.09 Total: -9.36 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.43 -11.19 -45.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602205654.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.349 kcal (2) G-P(sol) polarization free energy of solvation -34.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.611 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.32 seconds