Wall clock time and date at job start Sat Apr 11 2020 06:20:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 119.99953 * 2 1 4 4 H 1.48504 * 109.47031 * 269.99786 * 3 2 1 5 5 H 1.48494 * 109.47217 * 29.99835 * 3 2 1 6 6 H 1.48499 * 109.47015 * 149.99906 * 3 2 1 7 7 C 1.37878 * 119.99947 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00021 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00117 * 359.97438 * 7 2 1 10 10 N 1.46896 * 109.47164 * 179.97438 * 9 7 2 11 11 C 1.46894 * 111.00156 * 170.00026 * 10 9 7 12 12 C 1.53239 * 109.34490 * 187.25482 * 11 10 9 13 13 N 1.47077 * 108.52003 * 306.17175 * 12 11 10 14 14 C 1.34770 * 120.88219 * 231.18256 * 13 12 11 15 15 O 1.21554 * 120.00105 * 5.79429 * 14 13 12 16 16 C 1.47865 * 120.00013 * 185.79164 * 14 13 12 17 17 C 1.39615 * 120.11318 * 219.29916 * 16 14 13 18 18 C 1.37973 * 119.99011 * 179.97438 * 17 16 14 19 19 C 1.38264 * 120.21314 * 0.02562 * 18 17 16 20 20 C 1.38913 * 120.23145 * 359.97438 * 19 18 17 21 21 N 1.40216 * 120.00006 * 179.97438 * 20 19 18 22 22 C 1.34729 * 126.83961 * 4.99646 * 21 20 19 23 23 N 1.30853 * 108.03187 * 180.02562 * 22 21 20 24 24 C 1.33262 * 109.84497 * 0.02562 * 23 22 21 25 25 N 1.30751 * 108.99807 * 0.23040 * 24 23 22 26 26 C 1.38603 * 120.00414 * 0.27017 * 20 19 18 27 27 C 1.47078 * 118.23516 * 51.45494 * 13 12 11 28 28 C 1.46894 * 111.00080 * 294.30638 * 10 9 7 29 29 H 0.96997 * 120.00399 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.46687 * 60.00564 * 9 7 2 31 31 H 1.08998 * 109.47351 * 300.00715 * 9 7 2 32 32 H 1.09010 * 109.49074 * 67.29595 * 11 10 9 33 33 H 1.09001 * 109.51708 * 307.23105 * 11 10 9 34 34 H 1.08995 * 109.63137 * 186.45897 * 12 11 10 35 35 H 1.09001 * 109.62650 * 65.88288 * 12 11 10 36 36 H 1.08007 * 120.00803 * 0.02562 * 17 16 14 37 37 H 1.07996 * 119.89387 * 180.02562 * 18 17 16 38 38 H 1.08000 * 119.88670 * 179.97438 * 19 18 17 39 39 H 1.08002 * 125.98286 * 359.97438 * 22 21 20 40 40 H 1.07998 * 125.49864 * 179.97438 * 24 23 22 41 41 H 1.07999 * 120.10237 * 179.70299 * 26 20 19 42 42 H 1.09005 * 109.62836 * 68.25545 * 27 13 12 43 43 H 1.09001 * 109.62807 * 188.83086 * 27 13 12 44 44 H 1.08996 * 109.49367 * 292.70226 * 28 10 9 45 45 H 1.08998 * 109.49800 * 52.78720 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5466 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2056 -3.6157 -0.0018 11 6 1.5214 -4.8936 0.2363 12 6 2.5640 -6.0034 0.4079 13 7 3.4610 -5.9860 -0.7576 14 6 3.7108 -7.1117 -1.4552 15 8 3.1126 -8.1362 -1.1903 16 6 4.7125 -7.1006 -2.5428 17 6 4.4754 -7.8115 -3.7207 18 6 5.4116 -7.7990 -4.7342 19 6 6.5861 -7.0843 -4.5876 20 6 6.8313 -6.3738 -3.4194 21 7 8.0242 -5.6511 -3.2757 22 6 8.9789 -5.4739 -4.2097 23 7 9.9284 -4.7424 -3.6847 24 6 9.6189 -4.4352 -2.4255 25 7 8.4651 -4.9731 -2.1274 26 6 5.8995 -6.3841 -2.3933 27 6 4.0828 -4.7085 -1.1380 28 6 2.9757 -3.6485 -1.2522 29 1 -0.4850 0.8400 -0.0004 30 1 0.6241 -2.5567 -0.8904 31 1 0.6246 -2.5571 0.8896 32 1 0.8791 -5.1261 -0.6132 33 1 0.9165 -4.8200 1.1401 34 1 2.0635 -6.9696 0.4702 35 1 3.1403 -5.8272 1.3161 36 1 3.5589 -8.3706 -3.8390 37 1 5.2264 -8.3492 -5.6448 38 1 7.3155 -7.0785 -5.3840 39 1 8.9636 -5.8676 -5.2153 40 1 10.2254 -3.8415 -1.7576 41 1 6.0906 -5.8361 -1.4825 42 1 4.8024 -4.4102 -0.3755 43 1 4.5870 -4.8183 -2.0981 44 1 2.3133 -3.8983 -2.0809 45 1 3.4261 -2.6716 -1.4278 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602205654.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:29 Heat of formation + Delta-G solvation = 92.748813 kcal Electronic energy + Delta-G solvation = -29204.733585 eV Core-core repulsion = 25224.135882 eV Total energy + Delta-G solvation = -3980.597703 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 3.55 seconds Orbital eigenvalues (eV) -43.33535 -41.73702 -39.92156 -38.92724 -36.12788 -35.23528 -34.51506 -33.12706 -32.37696 -31.63108 -30.59495 -30.01565 -27.51003 -25.49510 -25.14157 -24.69206 -23.85298 -22.94399 -22.31104 -21.84073 -20.56970 -19.09243 -18.52642 -18.06793 -17.38336 -17.24801 -16.95136 -16.72880 -16.62988 -16.27620 -16.07397 -15.83120 -15.45907 -15.30810 -15.06511 -15.02878 -14.68052 -14.40957 -14.22164 -13.88230 -13.56292 -13.36084 -13.10127 -12.89035 -12.79044 -12.66806 -12.63405 -12.45905 -12.35593 -12.20650 -11.91700 -11.82851 -11.32481 -11.19407 -11.10245 -10.96675 -10.64660 -10.14609 -9.89779 -9.51016 -9.12974 -8.22965 -6.33363 -0.43966 -0.15975 0.90388 1.13698 1.40592 1.41942 1.53517 1.53833 1.79224 1.89519 2.38515 2.60371 3.07537 3.09849 3.17427 3.37981 3.48681 3.69602 3.82994 3.92181 3.93099 4.01128 4.06463 4.13816 4.16920 4.27120 4.32588 4.43152 4.46737 4.63363 4.70928 4.75840 4.84182 4.88419 4.92016 5.09328 5.13406 5.16841 5.23023 5.28430 5.32563 5.35427 5.52711 5.60611 5.95699 5.98566 6.12580 6.26320 6.50677 6.81870 6.88013 6.95462 7.36655 8.88403 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009487 B = 0.003326 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2950.622240 B = 8416.641301 C =10573.332392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.003 3.997 3 Si 0.968 3.032 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.263 1.263 7 C -0.523 4.523 8 H 0.066 0.934 9 C 0.209 3.791 10 N -0.539 5.539 11 C 0.043 3.957 12 C 0.125 3.875 13 N -0.603 5.603 14 C 0.557 3.443 15 O -0.571 6.571 16 C -0.123 4.123 17 C -0.076 4.076 18 C -0.082 4.082 19 C -0.094 4.094 20 C 0.130 3.870 21 N -0.339 5.339 22 C 0.270 3.730 23 N -0.563 5.563 24 C 0.205 3.795 25 N -0.351 5.351 26 C -0.094 4.094 27 C 0.121 3.879 28 C 0.054 3.946 29 H 0.265 0.735 30 H -0.040 1.040 31 H 0.008 0.992 32 H 0.017 0.983 33 H 0.086 0.914 34 H 0.096 0.904 35 H 0.086 0.914 36 H 0.140 0.860 37 H 0.185 0.815 38 H 0.183 0.817 39 H 0.271 0.729 40 H 0.246 0.754 41 H 0.132 0.868 42 H 0.082 0.918 43 H 0.104 0.896 44 H 0.016 0.984 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.509 -15.989 -12.866 26.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.195 4.195 3 Si 0.793 3.207 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.188 1.188 7 C -0.562 4.562 8 H 0.084 0.916 9 C 0.083 3.917 10 N -0.264 5.264 11 C -0.086 4.086 12 C 0.003 3.997 13 N -0.335 5.335 14 C 0.347 3.653 15 O -0.452 6.452 16 C -0.127 4.127 17 C -0.095 4.095 18 C -0.100 4.100 19 C -0.114 4.114 20 C 0.037 3.963 21 N -0.123 5.123 22 C -0.024 4.024 23 N -0.289 5.289 24 C -0.096 4.096 25 N -0.177 5.177 26 C -0.115 4.115 27 C -0.002 4.002 28 C -0.075 4.075 29 H 0.073 0.927 30 H -0.022 1.022 31 H 0.026 0.974 32 H 0.035 0.965 33 H 0.105 0.895 34 H 0.115 0.885 35 H 0.104 0.896 36 H 0.158 0.842 37 H 0.202 0.798 38 H 0.200 0.800 39 H 0.286 0.714 40 H 0.261 0.739 41 H 0.150 0.850 42 H 0.101 0.899 43 H 0.122 0.878 44 H 0.034 0.966 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 17.334 -16.133 -11.756 26.437 hybrid contribution -1.016 1.059 -0.137 1.474 sum 16.318 -15.074 -11.894 25.198 Atomic orbital electron populations 1.70083 1.07796 1.27971 1.51647 1.25898 0.95683 1.03180 0.94711 0.85395 0.78628 0.78266 0.78432 1.19803 1.20850 1.18769 1.21436 0.93702 0.90801 1.50224 0.91558 1.19374 0.90003 0.88732 0.93564 1.62007 1.27211 1.02791 1.34366 1.22443 0.95545 0.89795 1.00777 1.21722 0.91361 0.98829 0.87776 1.48206 1.46472 1.08734 1.30045 1.18696 0.82150 0.82688 0.81728 1.90740 1.52332 1.32763 1.69365 1.19657 0.94766 1.02057 0.96219 1.21550 1.00879 0.95683 0.91421 1.21400 0.91233 0.97713 0.99637 1.21504 0.99608 0.94960 0.95351 1.17610 0.84384 0.97154 0.97107 1.47799 1.16102 1.38398 1.10040 1.27167 0.82964 0.93871 0.98356 1.70673 1.29084 1.19419 1.09726 1.26750 0.92103 0.97666 0.93132 1.78183 1.16465 1.15887 1.07137 1.21055 0.92480 0.98473 0.99471 1.22281 0.94784 0.81092 1.02039 1.22402 0.95416 0.99638 0.90073 0.92652 1.02228 0.97401 0.96450 0.89535 0.88548 0.89613 0.84211 0.79820 0.80009 0.71406 0.73856 0.85035 0.89943 0.87833 0.96586 0.89809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.94 13.29 21.45 0.28 -55.66 16 2 C 0.00 0.20 5.46 84.66 0.46 0.66 16 3 Si 0.97 43.70 29.54 68.60 2.03 45.72 16 4 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 5 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 6 H -0.26 -11.43 7.11 99.48 0.71 -10.73 16 7 C -0.52 -29.17 8.41 25.60 0.22 -28.95 16 8 H 0.07 3.59 7.13 -2.91 -0.02 3.57 16 9 C 0.21 11.10 4.72 85.56 0.40 11.51 16 10 N -0.54 -23.12 4.62 -898.90 -4.15 -27.27 16 11 C 0.04 1.59 5.62 86.38 0.49 2.08 16 12 C 0.13 3.92 6.61 86.35 0.57 4.49 16 13 N -0.60 -18.54 3.00 -820.44 -2.46 -21.00 16 14 C 0.56 16.85 7.34 86.79 0.64 17.49 16 15 O -0.57 -20.28 16.37 -3.89 -0.06 -20.34 16 16 C -0.12 -2.87 5.14 -20.10 -0.10 -2.98 16 17 C -0.08 -1.29 9.63 22.54 0.22 -1.08 16 18 C -0.08 -0.72 10.02 22.21 0.22 -0.50 16 19 C -0.09 -0.80 9.47 22.44 0.21 -0.58 16 20 C 0.13 2.17 6.68 38.05 0.25 2.43 16 21 N -0.34 -6.13 3.82 -191.36 -0.73 -6.86 16 22 C 0.27 3.47 11.97 180.26 2.16 5.63 16 23 N -0.56 -10.19 11.19 -203.72 -2.28 -12.47 16 24 C 0.21 3.87 13.03 180.75 2.35 6.22 16 25 N -0.35 -8.03 12.06 -61.21 -0.74 -8.76 16 26 C -0.09 -2.06 7.04 22.65 0.16 -1.90 16 27 C 0.12 3.61 5.02 86.50 0.43 4.04 16 28 C 0.05 2.04 5.47 86.54 0.47 2.51 16 29 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 30 H -0.04 -2.33 8.12 -2.39 -0.02 -2.35 16 31 H 0.01 0.45 7.97 -2.39 -0.02 0.43 16 32 H 0.02 0.67 8.14 -2.38 -0.02 0.65 16 33 H 0.09 3.08 7.99 -2.39 -0.02 3.06 16 34 H 0.10 2.93 7.04 -2.39 -0.02 2.92 16 35 H 0.09 2.52 8.14 -2.39 -0.02 2.51 16 36 H 0.14 2.34 8.05 -2.91 -0.02 2.32 16 37 H 0.18 0.18 8.06 -2.91 -0.02 0.16 16 38 H 0.18 -0.15 6.82 -2.91 -0.02 -0.17 16 39 H 0.27 0.21 7.12 -2.91 -0.02 0.19 16 40 H 0.25 2.91 8.06 -2.91 -0.02 2.89 16 41 H 0.13 3.30 6.16 -2.91 -0.02 3.28 16 42 H 0.08 2.45 8.05 -2.38 -0.02 2.43 16 43 H 0.10 2.73 4.88 -2.39 -0.01 2.72 16 44 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 45 H 0.08 3.40 6.67 -2.39 -0.02 3.39 16 Total: -1.00 -78.62 371.70 2.06 -76.55 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: 1.02 Total: 9.01 kcal Atomic # 6 Polarization: 11.92 SS G_CDS: 9.16 Total: 21.08 kcal Atomic # 7 Polarization: -121.95 SS G_CDS: -10.08 Total: -132.03 kcal Atomic # 8 Polarization: -20.28 SS G_CDS: -0.06 Total: -20.34 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.72 kcal Total: -78.62 2.06 -76.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602205654.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.302 kcal (2) G-P(sol) polarization free energy of solvation -78.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.554 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.55 seconds