Wall clock time and date at job start Sat Apr 11 2020 06:21:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86804 * 119.99906 * 2 1 4 4 H 1.48498 * 109.47285 * 269.99560 * 3 2 1 5 5 H 1.48497 * 109.46871 * 30.00221 * 3 2 1 6 6 H 1.48506 * 109.46917 * 149.99677 * 3 2 1 7 7 C 1.37877 * 120.00176 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00539 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99996 * 0.02562 * 7 2 1 10 10 N 1.46901 * 109.47407 * 180.02562 * 9 7 2 11 11 C 1.46892 * 110.99918 * 169.99926 * 10 9 7 12 12 C 1.53242 * 109.33755 * 187.25136 * 11 10 9 13 13 N 1.47080 * 108.52266 * 306.16829 * 12 11 10 14 14 C 1.34773 * 120.88121 * 231.18991 * 13 12 11 15 15 O 1.21344 * 120.00287 * 8.10553 * 14 13 12 16 16 C 1.49457 * 119.99759 * 188.10985 * 14 13 12 17 17 O 1.21349 * 119.99751 * 6.70604 * 16 14 13 18 18 N 1.34776 * 119.99700 * 186.70377 * 16 14 13 19 19 C 1.46501 * 119.99862 * 180.02562 * 18 16 14 20 20 C 1.52993 * 109.47018 * 180.02562 * 19 18 16 21 21 H 1.09001 * 110.30970 * 57.82886 * 20 19 18 22 22 C 1.53719 * 110.34089 * 179.97438 * 20 19 18 23 23 C 1.52937 * 112.48939 * 116.04434 * 22 20 19 24 24 C 1.55149 * 108.96376 * 30.10251 * 23 22 20 25 25 S 1.83401 * 110.33955 * 295.53887 * 20 19 18 26 26 C 1.47081 * 118.23530 * 51.45441 * 13 12 11 27 27 C 1.46900 * 110.99726 * 294.29890 * 10 9 7 28 28 H 0.97003 * 120.00133 * 359.97438 * 1 2 3 29 29 H 1.08996 * 109.47364 * 59.99187 * 9 7 2 30 30 H 1.09000 * 109.46916 * 299.99896 * 9 7 2 31 31 H 1.08993 * 109.49854 * 67.29012 * 11 10 9 32 32 H 1.09001 * 109.49255 * 307.20273 * 11 10 9 33 33 H 1.08997 * 109.63164 * 186.45576 * 12 11 10 34 34 H 1.09001 * 109.79269 * 65.97006 * 12 11 10 35 35 H 0.96997 * 120.00063 * 0.02562 * 18 16 14 36 36 H 1.09000 * 109.47202 * 59.99662 * 19 18 16 37 37 H 1.09003 * 109.46640 * 299.99892 * 19 18 16 38 38 H 1.09000 * 108.88397 * 236.83746 * 22 20 19 39 39 H 1.08996 * 108.88384 * 355.39055 * 22 20 19 40 40 H 1.09000 * 109.60392 * 150.03592 * 23 22 20 41 41 H 1.09004 * 109.60374 * 270.34741 * 23 22 20 42 42 H 1.08999 * 111.13329 * 76.47248 * 24 23 22 43 43 H 1.09002 * 111.12865 * 200.65114 * 24 23 22 44 44 H 1.08999 * 109.62794 * 68.25798 * 26 13 12 45 45 H 1.08999 * 109.62953 * 188.83453 * 26 13 12 46 46 H 1.09006 * 109.49349 * 292.70783 * 27 10 9 47 47 H 1.09005 * 109.49523 * 52.78267 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2056 -3.6157 0.0018 11 6 1.5210 -4.8933 0.2400 12 6 2.5634 -6.0030 0.4140 13 7 3.4621 -5.9866 -0.7502 14 6 3.7128 -7.1130 -1.4464 15 8 3.0856 -8.1246 -1.2103 16 6 4.7635 -7.1162 -2.5093 17 8 5.4735 -6.1443 -2.6635 18 7 4.9224 -8.1986 -3.2964 19 6 5.9527 -8.2020 -4.3380 20 6 5.9217 -9.5387 -5.0816 21 1 4.9351 -9.7091 -5.5126 22 6 6.9958 -9.5637 -6.1809 23 6 8.0658 -10.6271 -5.9293 24 6 7.4279 -11.8109 -5.1554 25 16 6.3707 -10.9092 -3.9486 26 6 4.0845 -4.7095 -1.1309 27 6 2.9776 -3.6497 -1.2476 28 1 -0.4850 0.8401 0.0004 29 1 0.6246 -2.5571 -0.8896 30 1 0.6240 -2.5567 0.8903 31 1 0.8800 -5.1266 -0.6101 32 1 0.9152 -4.8186 1.1431 33 1 2.0628 -6.9692 0.4766 34 1 3.1390 -5.8293 1.3232 35 1 4.3547 -8.9754 -3.1733 36 1 6.9323 -8.0629 -3.8805 37 1 5.7614 -7.3911 -5.0408 38 1 6.5160 -9.7656 -7.1385 39 1 7.4764 -8.5864 -6.2268 40 1 8.4593 -10.9825 -6.8817 41 1 8.8743 -10.1993 -5.3365 42 1 6.8255 -12.4336 -5.8166 43 1 8.1885 -12.4028 -4.6462 44 1 4.8029 -4.4104 -0.3677 45 1 4.5900 -4.8201 -2.0902 46 1 2.3163 -3.9002 -2.0771 47 1 3.4281 -2.6728 -1.4235 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602253032.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:56 Heat of formation + Delta-G solvation = -47.760273 kcal Electronic energy + Delta-G solvation = -27421.146393 eV Core-core repulsion = 23537.606959 eV Total energy + Delta-G solvation = -3883.539434 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.88530 -38.90461 -37.56099 -37.23790 -35.23286 -34.19857 -32.39237 -31.09421 -30.76417 -28.43235 -27.12401 -25.87333 -24.54947 -23.39517 -22.97793 -21.67635 -21.28233 -20.46481 -19.37365 -17.68116 -17.32223 -17.07209 -16.36518 -16.33829 -16.12720 -15.56832 -15.08169 -14.79771 -14.68262 -14.65357 -14.42616 -14.13495 -13.93118 -13.73768 -13.52107 -13.44639 -12.82642 -12.69822 -12.42078 -12.22958 -12.09376 -11.96455 -11.91812 -11.48280 -11.26411 -11.23638 -11.03437 -10.85548 -10.72182 -10.58643 -10.51569 -10.38399 -9.89473 -9.52706 -9.27104 -9.10277 -8.57282 -8.44052 -8.17690 -7.30451 -6.04348 -4.06067 1.26080 1.39700 1.79642 2.26694 3.17918 3.31452 3.37787 3.41917 3.43961 3.92538 3.97418 4.20086 4.29549 4.40184 4.41199 4.59802 4.66093 4.87666 4.90422 5.03789 5.13749 5.24530 5.27389 5.30933 5.33422 5.38607 5.44340 5.51226 5.59997 5.68356 5.78947 5.86416 5.97462 6.21964 6.28261 6.45882 6.54624 6.62481 6.89628 7.23789 7.29625 7.36695 7.65621 7.76643 7.97792 8.03609 8.14278 8.49851 9.01285 9.58358 11.06444 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.023150 B = 0.002049 C = 0.001928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.223222 B =13661.425851 C =14520.783519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.898 3.102 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.272 1.272 7 C -0.508 4.508 8 H 0.064 0.936 9 C 0.193 3.807 10 N -0.537 5.537 11 C 0.042 3.958 12 C 0.114 3.886 13 N -0.572 5.572 14 C 0.504 3.496 15 O -0.534 6.534 16 C 0.512 3.488 17 O -0.507 6.507 18 N -0.702 5.702 19 C 0.135 3.865 20 C -0.056 4.056 21 H 0.106 0.894 22 C -0.124 4.124 23 C -0.125 4.125 24 C -0.073 4.073 25 S -0.279 6.279 26 C 0.077 3.923 27 C 0.050 3.950 28 H 0.261 0.739 29 H -0.009 1.009 30 H 0.032 0.968 31 H 0.027 0.973 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.079 0.921 35 H 0.414 0.586 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.078 0.922 39 H 0.086 0.914 40 H 0.083 0.917 41 H 0.080 0.920 42 H 0.091 0.909 43 H 0.107 0.893 44 H 0.076 0.924 45 H 0.130 0.870 46 H 0.023 0.977 47 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.588 -22.970 -13.072 30.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.726 3.274 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.197 1.197 7 C -0.547 4.547 8 H 0.083 0.917 9 C 0.068 3.932 10 N -0.262 5.262 11 C -0.087 4.087 12 C -0.008 4.008 13 N -0.304 5.304 14 C 0.286 3.714 15 O -0.412 6.412 16 C 0.294 3.706 17 O -0.383 6.383 18 N -0.356 5.356 19 C 0.010 3.990 20 C -0.185 4.185 21 H 0.124 0.876 22 C -0.163 4.163 23 C -0.164 4.164 24 C -0.221 4.221 25 S -0.052 6.052 26 C -0.044 4.044 27 C -0.079 4.079 28 H 0.071 0.929 29 H 0.009 0.991 30 H 0.050 0.950 31 H 0.046 0.954 32 H 0.102 0.898 33 H 0.108 0.892 34 H 0.098 0.902 35 H 0.250 0.750 36 H 0.104 0.896 37 H 0.105 0.895 38 H 0.097 0.903 39 H 0.105 0.895 40 H 0.102 0.898 41 H 0.099 0.901 42 H 0.109 0.891 43 H 0.125 0.875 44 H 0.095 0.905 45 H 0.147 0.853 46 H 0.041 0.959 47 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 14.627 -22.823 -11.505 29.448 hybrid contribution -0.300 0.722 -1.690 1.862 sum 14.327 -22.101 -13.195 29.459 Atomic orbital electron populations 1.69957 1.06086 1.26817 1.50891 1.24998 0.94875 0.99370 0.95399 0.86489 0.79821 0.83029 0.78034 1.20737 1.21289 1.19715 1.21147 0.93516 0.89843 1.50197 0.91747 1.19733 0.90024 0.87226 0.96204 1.62119 1.27932 1.02572 1.33577 1.22381 0.94748 0.90520 1.01091 1.21946 0.91840 0.99961 0.87059 1.48151 1.44802 1.08548 1.28906 1.19893 0.84092 0.84236 0.83220 1.90730 1.49801 1.32767 1.67883 1.20282 0.84856 0.83062 0.82398 1.90566 1.45721 1.32299 1.69707 1.45750 1.37265 1.18300 1.34247 1.21531 0.92628 0.95207 0.89643 1.24025 1.02986 0.94998 0.96474 0.87551 1.21996 0.95218 1.01235 0.97872 1.22400 0.98812 0.93910 1.01306 1.24396 1.00144 0.99460 0.98116 1.88263 1.65463 1.28282 1.23230 1.23132 0.95942 0.80845 1.04514 1.22473 0.95041 0.99371 0.90994 0.92907 0.99114 0.95017 0.95444 0.89818 0.89156 0.90235 0.74950 0.89622 0.89530 0.90302 0.89498 0.89810 0.90133 0.89056 0.87487 0.90548 0.85299 0.95898 0.88344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.56 13.29 55.43 0.74 -25.82 16 2 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 3 Si 0.90 21.50 29.54 -169.99 -5.02 16.48 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.51 -14.09 8.41 -34.44 -0.29 -14.38 16 8 H 0.06 1.76 7.13 -52.49 -0.37 1.38 16 9 C 0.19 4.99 4.72 -4.97 -0.02 4.97 16 10 N -0.54 -11.49 4.62 -235.47 -1.09 -12.58 16 11 C 0.04 0.76 5.62 -3.70 -0.02 0.74 16 12 C 0.11 1.80 6.61 -3.60 -0.02 1.78 16 13 N -0.57 -9.28 3.00 -172.69 -0.52 -9.80 16 14 C 0.50 7.87 7.75 -11.58 -0.09 7.78 16 15 O -0.53 -9.03 15.96 5.50 0.09 -8.94 16 16 C 0.51 7.01 7.74 -11.58 -0.09 6.92 16 17 O -0.51 -7.61 13.20 5.50 0.07 -7.54 16 18 N -0.70 -7.46 5.35 -60.73 -0.32 -7.79 16 19 C 0.13 1.07 4.88 -4.04 -0.02 1.05 16 20 C -0.06 -0.34 3.38 -26.36 -0.09 -0.43 16 21 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16 22 C -0.12 -0.49 6.03 -26.39 -0.16 -0.65 16 23 C -0.13 -0.45 6.34 -25.63 -0.16 -0.62 16 24 C -0.07 -0.34 7.52 38.29 0.29 -0.05 16 25 S -0.28 -2.24 22.23 -107.50 -2.39 -4.63 16 26 C 0.08 1.28 6.14 -3.37 -0.02 1.26 16 27 C 0.05 0.98 5.47 -3.47 -0.02 0.96 16 28 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 29 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 30 H 0.03 0.87 7.97 -51.93 -0.41 0.46 16 31 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.08 1.45 7.99 -51.93 -0.41 1.04 16 33 H 0.09 1.36 7.05 -51.93 -0.37 0.99 16 34 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.41 4.31 7.73 -40.82 -0.32 4.00 16 36 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.08 0.24 8.14 -51.93 -0.42 -0.19 16 39 H 0.09 0.31 7.62 -51.93 -0.40 -0.09 16 40 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 41 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.11 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 45 H 0.13 2.07 4.44 -54.24 -0.24 1.83 16 46 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.10 2.03 6.67 -51.93 -0.35 1.69 16 LS Contribution 385.31 15.07 5.81 5.81 Total: -1.00 -32.29 385.31 -10.95 -43.25 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -7.50 Total: 0.79 kcal Atomic # 6 Polarization: 11.59 SS G_CDS: -0.82 Total: 10.77 kcal Atomic # 7 Polarization: -54.79 SS G_CDS: -1.19 Total: -55.98 kcal Atomic # 8 Polarization: -16.64 SS G_CDS: 0.16 Total: -16.48 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: -2.24 SS G_CDS: -2.39 Total: -4.63 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.29 -10.95 -43.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602253032.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.515 kcal (2) G-P(sol) polarization free energy of solvation -32.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds