Wall clock time and date at job start Sat Apr 11 2020 06:23:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 119.99980 * 2 1 4 4 H 1.48495 * 109.47322 * 240.00556 * 3 2 1 5 5 H 1.48501 * 109.46667 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47289 * 120.00116 * 3 2 1 7 7 C 1.38815 * 120.00517 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00425 * 179.97438 * 7 2 1 9 9 N 1.36940 * 119.99707 * 359.97438 * 7 2 1 10 10 C 1.46500 * 119.99888 * 179.97438 * 9 7 2 11 11 C 1.50704 * 109.47011 * 179.97438 * 10 9 7 12 12 C 1.35353 * 126.74498 * 95.00104 * 11 10 9 13 13 N 1.35320 * 106.17332 * 179.74033 * 12 11 10 14 14 C 1.46498 * 125.86776 * 179.97438 * 13 12 11 15 15 H 1.09003 * 109.40038 * 204.82548 * 14 13 12 16 16 C 1.53069 * 109.40058 * 84.99987 * 14 13 12 17 17 C 1.53348 * 108.42705 * 288.76901 * 16 14 13 18 18 C 1.52914 * 108.67359 * 292.47330 * 17 16 14 19 19 N 1.45753 * 110.49399 * 50.74805 * 18 17 16 20 20 C 1.39920 * 117.95048 * 160.92201 * 19 18 17 21 21 C 1.38874 * 120.06511 * 89.16123 * 20 19 18 22 22 C 1.38123 * 119.92648 * 179.67698 * 21 20 19 23 23 C 1.38285 * 120.06613 * 0.62038 * 22 21 20 24 24 C 1.38278 * 120.14406 * 359.67383 * 23 22 21 25 25 C 1.38118 * 120.07043 * 0.02562 * 24 23 22 26 26 C 1.33360 * 124.10101 * 340.92858 * 19 18 17 27 27 O 1.21286 * 118.24377 * 182.21828 * 26 19 18 28 28 N 1.28722 * 108.26097 * 359.97438 * 13 12 11 29 29 N 1.28628 * 110.17623 * 0.02562 * 28 13 12 30 30 H 0.97000 * 120.00525 * 359.97438 * 1 2 3 31 31 H 0.96998 * 120.00080 * 0.02562 * 9 7 2 32 32 H 1.08994 * 109.46710 * 60.00806 * 10 9 7 33 33 H 1.08995 * 109.47493 * 300.00202 * 10 9 7 34 34 H 1.07999 * 126.91580 * 359.77973 * 12 11 10 35 35 H 1.08996 * 109.67656 * 48.50396 * 16 14 13 36 36 H 1.08997 * 109.67308 * 169.03855 * 16 14 13 37 37 H 1.09000 * 109.60235 * 52.22526 * 17 16 14 38 38 H 1.08992 * 109.60330 * 172.54847 * 17 16 14 39 39 H 1.08997 * 109.30375 * 171.06079 * 18 17 16 40 40 H 1.09004 * 109.30192 * 290.64189 * 18 17 16 41 41 H 1.07998 * 120.03806 * 359.97438 * 21 20 19 42 42 H 1.07992 * 119.96289 * 180.29165 * 22 21 20 43 43 H 1.07996 * 119.92242 * 179.70292 * 23 22 21 44 44 H 1.07996 * 119.96960 * 180.02562 * 24 23 22 45 45 H 1.07996 * 120.03408 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2851 2.7464 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3257 -2.3881 -0.0005 10 6 2.0582 -3.6568 -0.0017 11 6 1.0790 -4.8023 -0.0008 12 6 0.6234 -5.4790 -1.0809 13 7 -0.2263 -6.4189 -0.6059 14 6 -0.9656 -7.3936 -1.4119 15 1 -1.8589 -7.7071 -0.8716 16 6 -0.0778 -8.6121 -1.6768 17 6 1.0209 -8.2055 -2.6663 18 6 0.3757 -7.9152 -4.0220 19 7 -0.7417 -6.9921 -3.8682 20 6 -1.1850 -6.3043 -5.0032 21 6 -2.1626 -6.8618 -5.8169 22 6 -2.6030 -6.1772 -6.9328 23 6 -2.0623 -4.9439 -7.2472 24 6 -1.0844 -4.3889 -6.4423 25 6 -0.6442 -5.0655 -5.3216 26 6 -1.3679 -6.7620 -2.7135 27 8 -2.3129 -6.0018 -2.7147 28 7 -0.2734 -6.3094 0.6758 29 7 0.4937 -5.3543 1.0679 30 1 -0.4851 0.8400 0.0004 31 1 0.3557 -2.3881 -0.0005 32 1 2.6854 -3.7148 0.8878 33 1 2.6842 -3.7141 -0.8921 34 1 0.8858 -5.3043 -2.1138 35 1 0.3747 -8.9464 -0.7432 36 1 -0.6766 -9.4166 -2.1037 37 1 1.5272 -7.3110 -2.3033 38 1 1.7407 -9.0175 -2.7675 39 1 1.1181 -7.4745 -4.6873 40 1 0.0122 -8.8472 -4.4550 41 1 -2.5815 -7.8273 -5.5748 42 1 -3.3665 -6.6081 -7.5634 43 1 -2.4049 -4.4129 -8.1229 44 1 -0.6644 -3.4254 -6.6903 45 1 0.1193 -4.6313 -4.6932 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603221047.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:20 Heat of formation + Delta-G solvation = 101.416827 kcal Electronic energy + Delta-G solvation = -29720.274718 eV Core-core repulsion = 25740.052888 eV Total energy + Delta-G solvation = -3980.221830 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 5.22 seconds Orbital eigenvalues (eV) -44.54697 -42.25816 -39.74274 -38.00485 -37.00736 -36.22457 -34.05142 -33.36770 -31.94129 -31.75088 -30.63813 -30.40618 -27.74410 -26.26147 -25.00459 -24.57188 -23.67711 -23.42572 -22.81610 -22.14296 -20.35138 -19.32340 -18.88635 -18.39667 -17.59079 -17.35169 -17.23277 -16.91284 -16.58586 -16.25913 -15.83929 -15.56699 -15.55363 -15.17843 -15.00598 -14.74809 -14.63197 -14.41981 -14.37819 -14.02637 -13.66060 -13.58045 -13.08327 -12.76666 -12.69718 -12.66189 -12.56662 -12.46249 -12.37708 -12.16440 -12.08518 -12.02249 -11.88639 -11.41818 -10.99056 -10.94366 -10.33722 -10.15064 -9.95015 -9.82990 -9.05989 -7.94352 -5.26560 0.18009 0.37068 0.38677 0.58676 1.33339 1.48261 1.52217 1.52808 1.58861 1.68919 2.58121 2.69323 2.88004 3.26357 3.31017 3.40386 3.49066 3.68672 3.74475 3.94331 3.97188 3.99503 4.05958 4.16463 4.17642 4.21569 4.38807 4.39916 4.46875 4.52984 4.61470 4.66886 4.76709 4.87566 4.89978 5.01036 5.01950 5.08055 5.10520 5.27653 5.41181 5.43247 5.47604 5.48319 5.52596 5.92509 6.03120 6.23455 6.71399 7.29844 7.35585 8.00064 8.26710 9.29524 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009669 B = 0.003638 C = 0.002869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2895.148162 B = 7695.434886 C = 9758.326749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.975 5.975 2 C -0.078 4.078 3 Si 0.982 3.018 4 H -0.270 1.270 5 H -0.298 1.298 6 H -0.276 1.276 7 C -0.247 4.247 8 H 0.088 0.912 9 N -0.741 5.741 10 C 0.236 3.764 11 C -0.025 4.025 12 C -0.021 4.021 13 N -0.271 5.271 14 C 0.134 3.866 15 H 0.149 0.851 16 C -0.125 4.125 17 C -0.143 4.143 18 C 0.105 3.895 19 N -0.543 5.543 20 C 0.110 3.890 21 C -0.114 4.114 22 C -0.114 4.114 23 C -0.115 4.115 24 C -0.122 4.122 25 C -0.129 4.129 26 C 0.512 3.488 27 O -0.564 6.564 28 N -0.095 5.095 29 N -0.287 5.287 30 H 0.250 0.750 31 H 0.368 0.632 32 H 0.037 0.963 33 H 0.062 0.938 34 H 0.200 0.800 35 H 0.097 0.903 36 H 0.136 0.864 37 H 0.058 0.942 38 H 0.134 0.866 39 H 0.096 0.904 40 H 0.108 0.892 41 H 0.139 0.861 42 H 0.155 0.845 43 H 0.150 0.850 44 H 0.136 0.864 45 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.428 -25.675 -18.715 31.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.626 5.626 2 C -0.269 4.269 3 Si 0.810 3.190 4 H -0.196 1.196 5 H -0.225 1.225 6 H -0.202 1.202 7 C -0.378 4.378 8 H 0.106 0.894 9 N -0.384 5.384 10 C 0.108 3.892 11 C -0.164 4.164 12 C -0.172 4.172 13 N -0.067 5.067 14 C 0.029 3.971 15 H 0.166 0.834 16 C -0.163 4.163 17 C -0.181 4.181 18 C -0.015 4.015 19 N -0.272 5.272 20 C 0.021 3.979 21 C -0.133 4.133 22 C -0.132 4.132 23 C -0.133 4.133 24 C -0.141 4.141 25 C -0.148 4.148 26 C 0.297 3.703 27 O -0.440 6.440 28 N -0.073 5.073 29 N -0.154 5.154 30 H 0.059 0.941 31 H 0.198 0.802 32 H 0.055 0.945 33 H 0.079 0.921 34 H 0.217 0.783 35 H 0.116 0.884 36 H 0.154 0.846 37 H 0.077 0.923 38 H 0.152 0.848 39 H 0.114 0.886 40 H 0.127 0.873 41 H 0.157 0.843 42 H 0.173 0.827 43 H 0.168 0.832 44 H 0.154 0.846 45 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -0.500 -25.805 -17.381 31.117 hybrid contribution 0.069 1.814 -0.493 1.881 sum -0.431 -23.992 -17.875 29.921 Atomic orbital electron populations 1.69880 1.07138 1.26206 1.59356 1.25704 0.96312 1.01572 1.03352 0.85092 0.77042 0.78363 0.78519 1.19562 1.22476 1.20185 1.19693 0.91870 0.84651 1.41606 0.89426 1.42530 1.05359 1.00830 1.89632 1.19003 0.90214 0.80038 0.99932 1.22268 1.03775 1.01091 0.89227 1.23362 0.97911 0.94281 1.01693 1.47234 1.29307 1.24147 1.05985 1.21965 0.98897 0.88322 0.87879 0.83379 1.22278 0.97357 0.93961 1.02748 1.22094 0.98473 1.04377 0.93141 1.21996 0.86917 0.93527 0.99059 1.44930 1.33816 1.42908 1.05556 1.17686 0.98280 0.93035 0.88886 1.21470 0.95668 1.01120 0.95030 1.21432 0.99942 0.94965 0.96855 1.21596 0.95694 0.95898 1.00119 1.21340 0.97876 1.00340 0.94516 1.21422 1.00882 0.94410 0.98098 1.19966 0.82905 0.81806 0.85583 1.90843 1.29739 1.36891 1.86545 1.78192 1.19202 1.16871 0.93073 1.75026 1.07961 1.05009 1.27370 0.94099 0.80157 0.94486 0.92059 0.78327 0.88427 0.84582 0.92315 0.84788 0.88610 0.87349 0.84319 0.82719 0.83204 0.84625 0.86992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.75 13.06 21.65 0.28 -63.47 16 2 C -0.08 -4.66 5.50 84.86 0.47 -4.19 16 3 Si 0.98 47.52 29.55 68.60 2.03 49.55 16 4 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 5 H -0.30 -14.65 7.11 99.48 0.71 -13.94 16 6 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 7 C -0.25 -14.36 9.99 84.03 0.84 -13.52 16 8 H 0.09 4.71 7.83 -2.91 -0.02 4.69 16 9 N -0.74 -41.09 5.59 -347.18 -1.94 -43.04 16 10 C 0.24 10.32 6.82 85.63 0.58 10.90 16 11 C -0.03 -1.03 6.62 41.60 0.28 -0.75 16 12 C -0.02 -0.69 8.81 83.49 0.74 0.04 16 13 N -0.27 -8.20 3.20 -331.42 -1.06 -9.26 16 14 C 0.13 2.80 3.42 44.10 0.15 2.95 16 15 H 0.15 2.95 8.14 -2.39 -0.02 2.93 16 16 C -0.13 -1.22 5.67 30.73 0.17 -1.05 16 17 C -0.14 -1.14 5.96 30.68 0.18 -0.96 16 18 C 0.10 0.88 6.35 86.49 0.55 1.43 16 19 N -0.54 -9.86 2.85 -635.83 -1.81 -11.67 16 20 C 0.11 2.34 4.01 38.15 0.15 2.50 16 21 C -0.11 -2.00 9.97 22.39 0.22 -1.77 16 22 C -0.11 -1.72 10.04 22.25 0.22 -1.50 16 23 C -0.12 -1.89 10.04 22.29 0.22 -1.67 16 24 C -0.12 -2.52 10.04 22.25 0.22 -2.30 16 25 C -0.13 -3.05 9.97 22.39 0.22 -2.83 16 26 C 0.51 12.78 5.98 87.71 0.52 13.31 16 27 O -0.56 -20.62 16.71 -3.05 -0.05 -20.68 16 28 N -0.09 -3.52 13.17 37.02 0.49 -3.03 16 29 N -0.29 -12.37 12.41 -48.60 -0.60 -12.98 16 30 H 0.25 15.85 8.31 -92.71 -0.77 15.07 16 31 H 0.37 22.74 7.66 -92.71 -0.71 22.03 16 32 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 34 H 0.20 5.60 7.53 -2.91 -0.02 5.58 16 35 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.14 0.42 8.13 -2.39 -0.02 0.40 16 37 H 0.06 0.78 5.69 -2.39 -0.01 0.77 16 38 H 0.13 0.24 8.14 -2.39 -0.02 0.22 16 39 H 0.10 0.71 8.08 -2.39 -0.02 0.69 16 40 H 0.11 0.31 8.14 -2.39 -0.02 0.29 16 41 H 0.14 1.88 8.06 -2.91 -0.02 1.86 16 42 H 0.16 1.40 8.06 -2.91 -0.02 1.37 16 43 H 0.15 1.64 8.06 -2.91 -0.02 1.62 16 44 H 0.14 2.48 8.06 -2.91 -0.02 2.46 16 45 H 0.11 2.85 8.06 -2.91 -0.02 2.82 16 Total: -1.00 -87.23 379.39 3.39 -83.84 By element: Atomic # 1 Polarization: 29.84 SS G_CDS: 0.31 Total: 30.15 kcal Atomic # 6 Polarization: -5.17 SS G_CDS: 5.75 Total: 0.58 kcal Atomic # 7 Polarization: -138.80 SS G_CDS: -4.65 Total: -143.45 kcal Atomic # 8 Polarization: -20.62 SS G_CDS: -0.05 Total: -20.68 kcal Atomic # 14 Polarization: 47.52 SS G_CDS: 2.03 Total: 49.55 kcal Total: -87.23 3.39 -83.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603221047.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.256 kcal (2) G-P(sol) polarization free energy of solvation -87.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.22 seconds