Wall clock time and date at job start Sat Apr 11 2020 06:24:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86801 * 119.99906 * 2 1 4 4 H 1.48490 * 109.47162 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47226 * 300.00285 * 3 2 1 6 6 H 1.48503 * 109.47322 * 59.99809 * 3 2 1 7 7 C 1.38806 * 120.00004 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99954 * 163.07305 * 7 2 1 9 9 N 1.36935 * 120.00106 * 343.06458 * 7 2 1 10 10 C 1.46923 * 120.63208 * 331.85384 * 9 7 2 11 11 C 1.53190 * 108.77875 * 233.58582 * 10 9 7 12 12 C 1.53045 * 109.31197 * 305.36303 * 11 10 9 13 13 N 1.46499 * 109.46090 * 181.38262 * 12 11 10 14 14 C 1.34781 * 119.99965 * 155.00215 * 13 12 11 15 15 O 1.21595 * 119.99846 * 0.02562 * 14 13 12 16 16 C 1.47507 * 119.99923 * 179.97438 * 14 13 12 17 17 C 1.36621 * 125.76428 * 180.28855 * 16 14 13 18 18 N 1.35076 * 106.79425 * 180.13897 * 17 16 14 19 19 C 1.40229 * 126.61370 * 179.90863 * 18 17 16 20 20 C 1.38825 * 120.06235 * 179.71024 * 19 18 17 21 21 C 1.38128 * 119.93223 * 179.97438 * 20 19 18 22 22 C 1.38275 * 120.06183 * 359.97438 * 21 20 19 23 23 C 1.38273 * 120.13741 * 0.02562 * 22 21 20 24 24 C 1.38126 * 120.06335 * 359.97438 * 23 22 21 25 25 N 1.40216 * 106.77348 * 359.64639 * 18 17 16 26 26 N 1.28750 * 108.38384 * 0.22619 * 25 18 17 27 27 C 1.53047 * 109.53614 * 61.36252 * 12 11 10 28 28 C 1.46931 * 120.63119 * 151.82956 * 9 7 2 29 29 H 0.97005 * 120.00240 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.59337 * 113.79673 * 10 9 7 31 31 H 1.09004 * 109.70346 * 353.43987 * 10 9 7 32 32 H 1.08996 * 109.50144 * 185.41161 * 11 10 9 33 33 H 1.09005 * 109.52367 * 65.32846 * 11 10 9 34 34 H 1.08998 * 109.45921 * 301.35709 * 12 11 10 35 35 H 0.97000 * 120.00071 * 335.00159 * 13 12 11 36 36 H 1.07999 * 126.60396 * 0.04231 * 17 16 14 37 37 H 1.07999 * 120.03935 * 359.95428 * 20 19 18 38 38 H 1.07995 * 119.96611 * 179.97438 * 21 20 19 39 39 H 1.08001 * 119.92836 * 179.74204 * 22 21 20 40 40 H 1.08004 * 119.97108 * 179.97438 * 23 22 21 41 41 H 1.07999 * 120.03463 * 179.97438 * 24 23 22 42 42 H 1.09002 * 109.49439 * 58.58693 * 27 12 11 43 43 H 1.09002 * 109.49586 * 178.68451 * 27 12 11 44 44 H 1.08996 * 109.58607 * 246.20193 * 28 9 7 45 45 H 1.08997 * 109.58175 * 6.48528 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0551 -1.2222 -0.2729 9 7 1.3701 -2.3624 0.3444 10 6 0.2262 -2.3408 1.2661 11 6 0.4975 -3.3207 2.4119 12 6 0.8121 -4.7020 1.8329 13 7 1.0397 -5.6495 2.9268 14 6 0.8364 -6.9673 2.7301 15 8 0.4644 -7.3698 1.6447 16 6 1.0661 -7.9214 3.8314 17 6 0.9030 -9.2760 3.7614 18 7 1.2129 -9.7699 4.9798 19 6 1.1847 -11.1171 5.3680 20 6 1.5379 -11.4755 6.6619 21 6 1.5087 -12.8033 7.0416 22 6 1.1276 -13.7749 6.1345 23 6 0.7754 -13.4209 4.8451 24 6 0.8026 -12.0948 4.4596 25 7 1.5740 -8.6765 5.7798 26 7 1.4761 -7.6055 5.0719 27 6 2.0675 -4.6179 0.9616 28 6 1.8139 -3.6527 -0.2007 29 1 -0.4851 0.8401 0.0004 30 1 -0.6770 -2.6410 0.7348 31 1 0.0968 -1.3358 1.6678 32 1 -0.3830 -3.3861 3.0510 33 1 1.3471 -2.9698 2.9978 34 1 -0.0280 -5.0417 1.2271 35 1 1.3368 -5.3285 3.7925 36 1 0.5857 -9.8427 2.8985 37 1 1.8355 -10.7171 7.3708 38 1 1.7837 -13.0827 8.0479 39 1 1.1096 -14.8128 6.4325 40 1 0.4786 -14.1821 4.1387 41 1 0.5278 -11.8190 3.4523 42 1 2.9024 -4.2545 1.5607 43 1 2.3043 -5.6066 0.5684 44 1 1.0402 -4.0599 -0.8516 45 1 2.7332 -3.5124 -0.7691 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609329976.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:24:17 Heat of formation + Delta-G solvation = 114.612877 kcal Electronic energy + Delta-G solvation = -28086.611524 eV Core-core repulsion = 24106.961918 eV Total energy + Delta-G solvation = -3979.649606 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 4.90 seconds Orbital eigenvalues (eV) -42.74389 -39.90528 -39.38226 -37.27302 -35.10716 -34.39030 -32.21413 -31.93719 -31.16157 -30.40024 -29.96033 -29.21725 -25.48265 -24.66446 -24.23722 -22.88187 -22.19361 -21.92976 -21.52909 -20.29335 -19.51939 -18.83390 -17.35540 -16.79489 -16.49817 -16.29654 -16.04295 -15.61831 -15.29251 -14.81834 -14.60400 -14.58083 -14.13908 -14.06629 -13.69846 -13.57527 -13.47250 -12.95251 -12.71218 -12.60194 -12.40645 -12.32218 -11.81508 -11.64961 -11.58844 -11.43765 -11.11155 -10.85302 -10.71094 -10.45963 -10.26083 -10.07015 -9.99319 -9.84801 -9.72129 -9.71490 -9.50058 -9.04802 -8.69609 -8.43464 -6.65780 -5.77093 -3.19184 -0.03107 0.63769 1.29544 1.50045 1.54234 3.08137 3.21170 3.28318 3.39319 3.47212 3.49548 3.84084 3.93522 4.16946 4.38538 4.42223 4.52001 4.55668 4.66306 4.69154 4.89623 4.97592 5.29034 5.34191 5.38504 5.48650 5.54505 5.61268 5.63516 5.72668 5.81150 5.90485 5.93406 6.11445 6.29016 6.33237 6.35909 6.56975 6.57987 6.62688 6.82298 6.90873 7.02239 7.35097 7.47007 7.64135 7.76618 7.83029 8.28984 8.47217 9.23354 9.86596 10.43577 11.31843 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.038135 B = 0.001801 C = 0.001767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.061509 B =15541.135979 C =15843.627411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.001 3.999 3 Si 0.902 3.098 4 H -0.278 1.278 5 H -0.291 1.291 6 H -0.289 1.289 7 C -0.250 4.250 8 H 0.066 0.934 9 N -0.593 5.593 10 C 0.175 3.825 11 C -0.147 4.147 12 C 0.151 3.849 13 N -0.705 5.705 14 C 0.600 3.400 15 O -0.538 6.538 16 C -0.086 4.086 17 C 0.091 3.909 18 N -0.314 5.314 19 C 0.135 3.865 20 C -0.105 4.105 21 C -0.098 4.098 22 C -0.116 4.116 23 C -0.095 4.095 24 C -0.125 4.125 25 N -0.058 5.058 26 N -0.194 5.194 27 C -0.140 4.140 28 C 0.148 3.852 29 H 0.253 0.747 30 H 0.021 0.979 31 H 0.092 0.908 32 H 0.055 0.945 33 H 0.061 0.939 34 H 0.085 0.915 35 H 0.404 0.596 36 H 0.208 0.792 37 H 0.142 0.858 38 H 0.137 0.863 39 H 0.132 0.868 40 H 0.138 0.862 41 H 0.136 0.864 42 H 0.060 0.940 43 H 0.055 0.945 44 H 0.021 0.979 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.069 -28.571 13.644 31.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.197 4.197 3 Si 0.732 3.268 4 H -0.203 1.203 5 H -0.218 1.218 6 H -0.216 1.216 7 C -0.380 4.380 8 H 0.084 0.916 9 N -0.315 5.315 10 C 0.048 3.952 11 C -0.187 4.187 12 C 0.048 3.952 13 N -0.353 5.353 14 C 0.383 3.617 15 O -0.415 6.415 16 C -0.225 4.225 17 C -0.063 4.063 18 N -0.093 5.093 19 C 0.044 3.956 20 C -0.125 4.125 21 C -0.117 4.117 22 C -0.134 4.134 23 C -0.114 4.114 24 C -0.146 4.146 25 N -0.036 5.036 26 N -0.068 5.068 27 C -0.180 4.180 28 C 0.021 3.979 29 H 0.063 0.937 30 H 0.039 0.961 31 H 0.110 0.890 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.103 0.897 35 H 0.239 0.761 36 H 0.225 0.775 37 H 0.160 0.840 38 H 0.155 0.845 39 H 0.150 0.850 40 H 0.155 0.845 41 H 0.154 0.846 42 H 0.078 0.922 43 H 0.074 0.926 44 H 0.039 0.961 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.166 -28.153 14.192 31.549 hybrid contribution 0.225 0.568 -0.444 0.755 sum 1.391 -27.585 13.749 30.852 Atomic orbital electron populations 1.70034 1.05239 1.25390 1.54108 1.25051 0.95296 0.98415 1.00948 0.86231 0.79374 0.83973 0.77242 1.20276 1.21764 1.21581 1.19233 0.92600 0.84741 1.41439 0.91601 1.44100 1.35819 1.01671 1.49953 1.20744 0.88891 0.97923 0.87641 1.22553 1.00774 0.94520 1.00875 1.21139 0.98699 0.88166 0.87185 1.46175 1.66994 1.05721 1.16449 1.16710 0.77799 0.82017 0.85216 1.90816 1.47668 1.78421 1.24575 1.21690 1.13285 0.93133 0.94343 1.23389 0.97951 0.94901 0.90009 1.47649 1.45104 1.07204 1.09294 1.17647 1.03851 0.78597 0.95549 1.21010 0.99737 0.97708 0.94041 1.21144 0.98515 0.91659 1.00356 1.21377 0.98389 1.00180 0.93489 1.21067 0.98612 0.95012 0.96699 1.21010 1.01606 0.92511 0.99460 1.82065 1.20810 0.86150 1.14621 1.74667 1.09560 1.19866 1.02724 1.22395 0.97120 0.99623 0.98870 1.20871 0.97931 0.86518 0.92587 0.93676 0.96052 0.88979 0.92590 0.91991 0.89737 0.76093 0.77540 0.84009 0.84547 0.84961 0.84457 0.84591 0.92172 0.92647 0.96128 0.92515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.18 11.19 55.49 0.62 -25.56 16 2 C 0.00 0.04 4.92 -17.43 -0.09 -0.05 16 3 Si 0.90 21.73 29.59 -169.99 -5.03 16.70 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 7 C -0.25 -6.88 9.58 -15.06 -0.14 -7.03 16 8 H 0.07 1.79 7.88 -52.49 -0.41 1.37 16 9 N -0.59 -14.89 2.99 -172.32 -0.52 -15.40 16 10 C 0.17 4.13 5.30 -3.71 -0.02 4.11 16 11 C -0.15 -2.77 5.55 -26.61 -0.15 -2.92 16 12 C 0.15 2.69 2.42 -67.88 -0.16 2.53 16 13 N -0.70 -10.87 5.07 -54.81 -0.28 -11.15 16 14 C 0.60 9.32 7.78 -12.48 -0.10 9.22 16 15 O -0.54 -9.63 16.53 5.28 0.09 -9.54 16 16 C -0.09 -1.15 6.99 -83.54 -0.58 -1.74 16 17 C 0.09 0.96 10.60 -16.71 -0.18 0.78 16 18 N -0.31 -3.29 3.82 -10.42 -0.04 -3.33 16 19 C 0.14 1.10 6.69 -83.58 -0.56 0.54 16 20 C -0.11 -0.74 9.68 -39.40 -0.38 -1.12 16 21 C -0.10 -0.47 10.04 -39.61 -0.40 -0.86 16 22 C -0.12 -0.46 10.04 -39.55 -0.40 -0.85 16 23 C -0.10 -0.41 10.04 -39.61 -0.40 -0.80 16 24 C -0.13 -0.74 9.47 -39.41 -0.37 -1.11 16 25 N -0.06 -0.73 13.12 60.35 0.79 0.06 16 26 N -0.19 -2.67 12.03 32.85 0.40 -2.28 16 27 C -0.14 -2.60 5.65 -26.61 -0.15 -2.75 16 28 C 0.15 3.20 6.52 -3.71 -0.02 3.17 16 29 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 30 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.09 2.42 6.07 -51.93 -0.31 2.11 16 32 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.08 1.64 7.58 -51.93 -0.39 1.25 16 35 H 0.40 5.66 8.29 -40.82 -0.34 5.32 16 36 H 0.21 1.52 7.13 -52.49 -0.37 1.15 16 37 H 0.14 1.01 7.73 -52.49 -0.41 0.60 16 38 H 0.14 0.34 8.06 -52.49 -0.42 -0.08 16 39 H 0.13 0.22 8.06 -52.49 -0.42 -0.21 16 40 H 0.14 0.27 8.06 -52.48 -0.42 -0.15 16 41 H 0.14 0.58 6.81 -52.49 -0.36 0.22 16 42 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 43 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 45 H 0.06 1.20 7.93 -51.93 -0.41 0.78 16 LS Contribution 377.69 15.07 5.69 5.69 Total: -1.00 -32.96 377.69 -8.33 -41.29 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -5.95 Total: 2.40 kcal Atomic # 6 Polarization: 5.22 SS G_CDS: -4.10 Total: 1.12 kcal Atomic # 7 Polarization: -58.63 SS G_CDS: 0.97 Total: -57.66 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: 0.09 Total: -9.54 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.03 Total: 16.70 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.96 -8.33 -41.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609329976.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.903 kcal (2) G-P(sol) polarization free energy of solvation -32.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.290 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.90 seconds