Wall clock time and date at job start Sat Apr 11 2020 06:24:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86801 * 119.99906 * 2 1 4 4 H 1.48490 * 109.47162 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47226 * 300.00285 * 3 2 1 6 6 H 1.48503 * 109.47322 * 59.99809 * 3 2 1 7 7 C 1.38806 * 120.00004 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99954 * 163.07305 * 7 2 1 9 9 N 1.36935 * 120.00106 * 343.06458 * 7 2 1 10 10 C 1.46923 * 120.63208 * 331.85384 * 9 7 2 11 11 C 1.53190 * 108.77875 * 233.58582 * 10 9 7 12 12 C 1.53045 * 109.31197 * 305.36303 * 11 10 9 13 13 N 1.46499 * 109.46090 * 181.38262 * 12 11 10 14 14 C 1.34781 * 119.99965 * 155.00215 * 13 12 11 15 15 O 1.21595 * 119.99846 * 0.02562 * 14 13 12 16 16 C 1.47507 * 119.99923 * 179.97438 * 14 13 12 17 17 C 1.36621 * 125.76428 * 180.28855 * 16 14 13 18 18 N 1.35076 * 106.79425 * 180.13897 * 17 16 14 19 19 C 1.40229 * 126.61370 * 179.90863 * 18 17 16 20 20 C 1.38825 * 120.06235 * 179.71024 * 19 18 17 21 21 C 1.38128 * 119.93223 * 179.97438 * 20 19 18 22 22 C 1.38275 * 120.06183 * 359.97438 * 21 20 19 23 23 C 1.38273 * 120.13741 * 0.02562 * 22 21 20 24 24 C 1.38126 * 120.06335 * 359.97438 * 23 22 21 25 25 N 1.40216 * 106.77348 * 359.64639 * 18 17 16 26 26 N 1.28750 * 108.38384 * 0.22619 * 25 18 17 27 27 C 1.53047 * 109.53614 * 61.36252 * 12 11 10 28 28 C 1.46931 * 120.63119 * 151.82956 * 9 7 2 29 29 H 0.97005 * 120.00240 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.59337 * 113.79673 * 10 9 7 31 31 H 1.09004 * 109.70346 * 353.43987 * 10 9 7 32 32 H 1.08996 * 109.50144 * 185.41161 * 11 10 9 33 33 H 1.09005 * 109.52367 * 65.32846 * 11 10 9 34 34 H 1.08998 * 109.45921 * 301.35709 * 12 11 10 35 35 H 0.97000 * 120.00071 * 335.00159 * 13 12 11 36 36 H 1.07999 * 126.60396 * 0.04231 * 17 16 14 37 37 H 1.07999 * 120.03935 * 359.95428 * 20 19 18 38 38 H 1.07995 * 119.96611 * 179.97438 * 21 20 19 39 39 H 1.08001 * 119.92836 * 179.74204 * 22 21 20 40 40 H 1.08004 * 119.97108 * 179.97438 * 23 22 21 41 41 H 1.07999 * 120.03463 * 179.97438 * 24 23 22 42 42 H 1.09002 * 109.49439 * 58.58693 * 27 12 11 43 43 H 1.09002 * 109.49586 * 178.68451 * 27 12 11 44 44 H 1.08996 * 109.58607 * 246.20193 * 28 9 7 45 45 H 1.08997 * 109.58175 * 6.48528 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0551 -1.2222 -0.2729 9 7 1.3701 -2.3624 0.3444 10 6 0.2262 -2.3408 1.2661 11 6 0.4975 -3.3207 2.4119 12 6 0.8121 -4.7020 1.8329 13 7 1.0397 -5.6495 2.9268 14 6 0.8364 -6.9673 2.7301 15 8 0.4644 -7.3698 1.6447 16 6 1.0661 -7.9214 3.8314 17 6 0.9030 -9.2760 3.7614 18 7 1.2129 -9.7699 4.9798 19 6 1.1847 -11.1171 5.3680 20 6 1.5379 -11.4755 6.6619 21 6 1.5087 -12.8033 7.0416 22 6 1.1276 -13.7749 6.1345 23 6 0.7754 -13.4209 4.8451 24 6 0.8026 -12.0948 4.4596 25 7 1.5740 -8.6765 5.7798 26 7 1.4761 -7.6055 5.0719 27 6 2.0675 -4.6179 0.9616 28 6 1.8139 -3.6527 -0.2007 29 1 -0.4851 0.8401 0.0004 30 1 -0.6770 -2.6410 0.7348 31 1 0.0968 -1.3358 1.6678 32 1 -0.3830 -3.3861 3.0510 33 1 1.3471 -2.9698 2.9978 34 1 -0.0280 -5.0417 1.2271 35 1 1.3368 -5.3285 3.7925 36 1 0.5857 -9.8427 2.8985 37 1 1.8355 -10.7171 7.3708 38 1 1.7837 -13.0827 8.0479 39 1 1.1096 -14.8128 6.4325 40 1 0.4786 -14.1821 4.1387 41 1 0.5278 -11.8190 3.4523 42 1 2.9024 -4.2545 1.5607 43 1 2.3043 -5.6066 0.5684 44 1 1.0402 -4.0599 -0.8516 45 1 2.7332 -3.5124 -0.7691 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609329976.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:24:07 Heat of formation + Delta-G solvation = 93.781297 kcal Electronic energy + Delta-G solvation = -28087.514849 eV Core-core repulsion = 24106.961918 eV Total energy + Delta-G solvation = -3980.552931 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 3.68 seconds Orbital eigenvalues (eV) -43.61085 -40.89579 -40.17094 -38.90224 -36.09352 -35.73479 -33.94173 -32.64969 -31.97764 -31.71179 -31.25228 -30.55196 -27.13509 -25.52715 -25.24019 -24.00017 -23.76142 -22.96073 -22.47191 -21.38463 -20.99800 -19.83814 -18.80452 -17.93099 -17.40348 -17.34711 -17.00434 -16.77555 -16.31423 -15.94577 -15.88546 -15.59983 -15.34649 -15.16324 -15.01462 -14.72059 -14.51275 -14.36671 -14.10281 -14.06613 -13.54044 -13.21094 -13.02468 -12.88102 -12.63078 -12.53041 -12.46912 -12.35704 -12.23993 -12.08773 -11.99601 -11.86189 -11.58627 -11.41402 -11.17290 -10.73426 -10.55526 -10.09426 -10.06860 -9.58823 -8.69639 -7.86969 -5.32303 -0.66617 0.26541 0.43245 0.71252 0.81108 1.47860 1.49953 1.60536 2.01844 2.12842 2.52611 2.68780 2.98838 3.19009 3.29473 3.61205 3.67206 3.71814 3.84568 3.89554 3.99472 4.03995 4.18241 4.32325 4.33223 4.36358 4.46881 4.49635 4.60446 4.66121 4.79165 4.86291 4.96085 5.01186 5.05865 5.15584 5.21780 5.27513 5.31111 5.43602 5.45574 5.46357 5.48650 5.65874 5.71838 5.87882 6.36997 6.40748 6.71299 7.07114 7.15519 7.85182 8.37922 9.20295 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.038135 B = 0.001801 C = 0.001767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.061509 B =15541.135979 C =15843.627411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.050 4.050 3 Si 0.968 3.032 4 H -0.267 1.267 5 H -0.293 1.293 6 H -0.289 1.289 7 C -0.262 4.262 8 H 0.067 0.933 9 N -0.609 5.609 10 C 0.180 3.820 11 C -0.131 4.131 12 C 0.163 3.837 13 N -0.699 5.699 14 C 0.605 3.395 15 O -0.564 6.564 16 C -0.109 4.109 17 C 0.105 3.895 18 N -0.301 5.301 19 C 0.097 3.903 20 C -0.119 4.119 21 C -0.101 4.101 22 C -0.107 4.107 23 C -0.096 4.096 24 C -0.126 4.126 25 N -0.078 5.078 26 N -0.212 5.212 27 C -0.125 4.125 28 C 0.146 3.854 29 H 0.250 0.750 30 H -0.001 1.001 31 H 0.063 0.937 32 H 0.075 0.925 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.413 0.587 36 H 0.238 0.762 37 H 0.131 0.869 38 H 0.158 0.842 39 H 0.162 0.838 40 H 0.165 0.835 41 H 0.151 0.849 42 H 0.063 0.937 43 H 0.065 0.935 44 H 0.013 0.987 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.774 -31.556 14.594 34.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.245 4.245 3 Si 0.796 3.204 4 H -0.192 1.192 5 H -0.220 1.220 6 H -0.216 1.216 7 C -0.392 4.392 8 H 0.085 0.915 9 N -0.333 5.333 10 C 0.053 3.947 11 C -0.171 4.171 12 C 0.059 3.941 13 N -0.348 5.348 14 C 0.390 3.610 15 O -0.442 6.442 16 C -0.247 4.247 17 C -0.049 4.049 18 N -0.079 5.079 19 C 0.007 3.993 20 C -0.139 4.139 21 C -0.119 4.119 22 C -0.125 4.125 23 C -0.114 4.114 24 C -0.147 4.147 25 N -0.057 5.057 26 N -0.085 5.085 27 C -0.165 4.165 28 C 0.019 3.981 29 H 0.060 0.940 30 H 0.017 0.983 31 H 0.081 0.919 32 H 0.094 0.906 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.249 0.751 36 H 0.255 0.745 37 H 0.149 0.851 38 H 0.175 0.825 39 H 0.180 0.820 40 H 0.183 0.817 41 H 0.169 0.831 42 H 0.081 0.919 43 H 0.084 0.916 44 H 0.031 0.969 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.896 -31.181 15.193 34.737 hybrid contribution -0.016 1.244 -0.718 1.436 sum 1.880 -29.937 14.476 33.307 Atomic orbital electron populations 1.70184 1.06636 1.25844 1.55422 1.25799 0.96054 1.01470 1.01193 0.85206 0.78608 0.79848 0.76758 1.19158 1.22022 1.21564 1.19544 0.92867 0.85861 1.40904 0.91511 1.44346 1.35931 1.02285 1.50706 1.20549 0.87907 0.97580 0.88618 1.22286 1.01879 0.93805 0.99098 1.20779 0.97776 0.88025 0.87540 1.45935 1.67209 1.05581 1.16113 1.16873 0.76817 0.81973 0.85382 1.90797 1.48839 1.78811 1.25771 1.21419 1.15645 0.93752 0.93924 1.23805 0.96275 0.94147 0.90693 1.47780 1.43503 1.07796 1.08841 1.18045 1.06769 0.77719 0.96815 1.21124 1.00323 0.98724 0.93722 1.21446 0.98036 0.90772 1.01689 1.21810 0.96212 1.01413 0.93052 1.21472 0.97666 0.94821 0.97455 1.21303 1.00845 0.92750 0.99765 1.81995 1.21843 0.86628 1.15197 1.74625 1.10268 1.20670 1.02980 1.22201 0.97471 0.99085 0.97780 1.20967 0.97602 0.85756 0.93728 0.94037 0.98267 0.91905 0.90616 0.91477 0.91243 0.75076 0.74549 0.85067 0.82454 0.82049 0.81706 0.83130 0.91870 0.91618 0.96877 0.92266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.57 11.19 21.65 0.24 -55.32 16 2 C -0.05 -2.80 4.92 84.86 0.42 -2.38 16 3 Si 0.97 45.16 29.59 68.60 2.03 47.19 16 4 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 5 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 6 H -0.29 -13.38 7.11 99.48 0.71 -12.68 16 7 C -0.26 -14.53 9.58 84.03 0.81 -13.72 16 8 H 0.07 3.62 7.88 -2.91 -0.02 3.60 16 9 N -0.61 -31.09 2.99 -699.11 -2.09 -33.19 16 10 C 0.18 8.73 5.30 86.36 0.46 9.19 16 11 C -0.13 -4.90 5.55 30.67 0.17 -4.73 16 12 C 0.16 5.74 2.42 45.02 0.11 5.85 16 13 N -0.70 -21.05 5.07 -445.58 -2.26 -23.32 16 14 C 0.60 18.39 7.78 86.69 0.67 19.06 16 15 O -0.56 -19.76 16.53 -4.02 -0.07 -19.83 16 16 C -0.11 -2.83 6.99 40.82 0.29 -2.54 16 17 C 0.11 2.09 10.60 83.82 0.89 2.98 16 18 N -0.30 -6.07 3.82 -186.89 -0.71 -6.79 16 19 C 0.10 1.45 6.69 38.08 0.25 1.71 16 20 C -0.12 -1.56 9.68 22.38 0.22 -1.34 16 21 C -0.10 -0.72 10.04 22.25 0.22 -0.50 16 22 C -0.11 -0.45 10.04 22.29 0.22 -0.23 16 23 C -0.10 -0.48 10.04 22.25 0.22 -0.26 16 24 C -0.13 -1.17 9.47 22.38 0.21 -0.96 16 25 N -0.08 -1.98 13.12 37.02 0.49 -1.49 16 26 N -0.21 -5.81 12.03 -49.98 -0.60 -6.41 16 27 C -0.13 -4.57 5.65 30.67 0.17 -4.40 16 28 C 0.15 6.32 6.52 86.36 0.56 6.89 16 29 H 0.25 14.36 8.31 -92.70 -0.77 13.59 16 30 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 31 H 0.06 3.41 6.07 -2.38 -0.01 3.40 16 32 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 33 H 0.07 2.46 8.14 -2.38 -0.02 2.44 16 34 H 0.07 2.70 7.58 -2.39 -0.02 2.68 16 35 H 0.41 11.20 8.29 -92.71 -0.77 10.44 16 36 H 0.24 2.94 7.13 -2.91 -0.02 2.92 16 37 H 0.13 1.90 7.73 -2.91 -0.02 1.88 16 38 H 0.16 0.37 8.06 -2.91 -0.02 0.35 16 39 H 0.16 -0.24 8.06 -2.91 -0.02 -0.26 16 40 H 0.17 -0.09 8.06 -2.91 -0.02 -0.11 16 41 H 0.15 0.85 6.81 -2.91 -0.02 0.83 16 42 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 43 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 44 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 45 H 0.06 2.50 7.93 -2.39 -0.02 2.48 16 Total: -1.00 -72.80 377.69 3.18 -69.62 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: 0.26 Total: 14.92 kcal Atomic # 6 Polarization: 8.71 SS G_CDS: 5.90 Total: 14.61 kcal Atomic # 7 Polarization: -121.58 SS G_CDS: -4.94 Total: -126.52 kcal Atomic # 8 Polarization: -19.76 SS G_CDS: -0.07 Total: -19.83 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Total: -72.80 3.18 -69.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609329976.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.404 kcal (2) G-P(sol) polarization free energy of solvation -72.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.622 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.68 seconds