Wall clock time and date at job start Sat Apr 11 2020 06:25:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 119.99881 * 2 1 4 4 H 1.48501 * 109.47054 * 272.89773 * 3 2 1 5 5 H 1.48497 * 109.47324 * 32.90277 * 3 2 1 6 6 H 1.48501 * 109.46722 * 152.90053 * 3 2 1 7 7 C 1.38817 * 119.99923 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00130 * 339.35621 * 7 2 1 9 9 N 1.36935 * 119.99782 * 159.36242 * 7 2 1 10 10 C 1.46925 * 120.62758 * 152.62208 * 9 7 2 11 11 C 1.53190 * 108.89356 * 126.30089 * 10 9 7 12 12 C 1.53352 * 109.15070 * 54.57285 * 11 10 9 13 13 N 1.46498 * 109.40649 * 178.68036 * 12 11 10 14 14 C 1.34771 * 120.00450 * 275.12229 * 13 12 11 15 15 O 1.21548 * 120.00240 * 0.02562 * 14 13 12 16 16 C 1.47866 * 120.00122 * 180.02562 * 14 13 12 17 17 C 1.39619 * 120.10959 * 0.02562 * 16 14 13 18 18 C 1.37979 * 119.97948 * 179.97438 * 17 16 14 19 19 C 1.38267 * 120.21627 * 0.02562 * 18 17 16 20 20 C 1.38905 * 120.22697 * 0.02562 * 19 18 17 21 21 N 1.40273 * 119.99006 * 179.97438 * 20 19 18 22 22 C 1.36120 * 125.94276 * 4.71318 * 21 20 19 23 23 C 1.35371 * 106.04951 * 179.84469 * 22 21 20 24 24 N 1.33779 * 106.53748 * 0.41366 * 23 22 21 25 25 N 1.28604 * 109.05716 * 359.72965 * 24 23 22 26 26 C 1.38582 * 120.01532 * 359.69784 * 20 19 18 27 27 C 1.53037 * 109.61060 * 298.71684 * 12 11 10 28 28 C 1.46926 * 120.63420 * 332.60348 * 9 7 2 29 29 H 0.96999 * 119.99917 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.58551 * 246.15355 * 10 9 7 31 31 H 1.08997 * 109.59252 * 6.43657 * 10 9 7 32 32 H 1.09004 * 109.50240 * 174.65815 * 11 10 9 33 33 H 1.09004 * 109.49453 * 294.75209 * 11 10 9 34 34 H 1.09008 * 109.42989 * 58.76438 * 12 11 10 35 35 H 0.97009 * 119.99692 * 95.12542 * 13 12 11 36 36 H 1.07994 * 120.01018 * 0.02562 * 17 16 14 37 37 H 1.07995 * 119.88790 * 179.97438 * 18 17 16 38 38 H 1.08003 * 119.88276 * 179.97438 * 19 18 17 39 39 H 1.07997 * 126.97562 * 0.02562 * 22 21 20 40 40 H 1.07995 * 126.73201 * 180.14504 * 23 22 21 41 41 H 1.07992 * 120.10810 * 180.27481 * 26 20 19 42 42 H 1.09003 * 109.49698 * 301.42330 * 27 12 11 43 43 H 1.08997 * 109.50033 * 181.32375 * 27 12 11 44 44 H 1.09002 * 109.58248 * 353.41531 * 28 9 7 45 45 H 1.08994 * 109.58922 * 113.70036 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4363 2.0818 -1.3983 5 1 1.4797 2.6342 0.7605 6 1 3.5770 1.4232 0.6378 7 6 2.0103 -1.2022 -0.0005 8 1 1.5223 -2.1076 0.3288 9 7 3.3137 -1.2400 -0.4185 10 6 4.2349 -2.2633 0.0944 11 6 4.8749 -2.9934 -1.0905 12 6 5.5284 -1.9650 -2.0216 13 7 6.1695 -2.6598 -3.1407 14 6 7.4197 -3.1446 -3.0056 15 8 8.0153 -3.0058 -1.9552 16 6 8.0670 -3.8454 -4.1354 17 6 7.3853 -4.0056 -5.3433 18 6 7.9921 -4.6595 -6.3959 19 6 9.2745 -5.1581 -6.2591 20 6 9.9604 -5.0045 -5.0610 21 7 11.2610 -5.5127 -4.9276 22 6 11.9971 -6.0933 -5.9144 23 6 13.1806 -6.4296 -5.3499 24 7 13.1110 -6.0550 -4.0675 25 7 11.9639 -5.5161 -3.8492 26 6 9.3622 -4.3443 -3.9995 27 6 4.4619 -1.0081 -2.5592 28 6 3.8176 -0.2585 -1.3888 29 1 -0.4850 0.8400 -0.0004 30 1 5.0117 -1.7882 0.6936 31 1 3.6843 -2.9758 0.7086 32 1 5.6299 -3.6892 -0.7244 33 1 4.1079 -3.5424 -1.6367 34 1 6.2780 -1.3993 -1.4680 35 1 5.6941 -2.7709 -3.9790 36 1 6.3838 -3.6172 -5.4539 37 1 7.4633 -4.7830 -7.3294 38 1 9.7441 -5.6694 -7.0865 39 1 11.6987 -6.2508 -6.9403 40 1 14.0155 -6.9105 -5.8378 41 1 9.8958 -4.2202 -3.0689 42 1 3.6989 -1.5759 -3.0917 43 1 4.9244 -0.2926 -3.2390 44 1 2.9910 0.3503 -1.7554 45 1 4.5584 0.3816 -0.9099 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611115950.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:25:16 Heat of formation + Delta-G solvation = 129.464166 kcal Electronic energy + Delta-G solvation = -28433.064355 eV Core-core repulsion = 24454.058749 eV Total energy + Delta-G solvation = -3979.005606 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -43.86562 -40.65166 -39.15215 -37.61528 -35.19985 -34.67603 -32.49304 -32.08179 -31.28598 -30.71604 -30.46039 -29.76763 -25.61445 -24.87801 -24.29038 -23.10730 -22.72445 -21.90353 -21.69790 -20.58219 -19.84807 -19.08078 -17.32696 -16.95595 -16.92918 -16.71915 -16.29670 -15.61334 -15.39677 -15.14485 -14.86996 -14.72228 -14.35630 -14.20562 -14.01352 -13.84885 -13.54817 -13.12240 -12.97802 -12.63347 -12.44806 -12.40486 -12.04407 -11.88469 -11.84082 -11.50492 -11.42680 -11.05896 -10.87706 -10.62207 -10.34635 -10.26597 -10.05594 -9.93987 -9.79021 -9.70985 -9.50449 -9.23821 -8.93948 -8.67006 -7.03203 -5.98216 -3.34338 -0.05891 0.37908 1.40126 1.72127 2.10988 2.51942 2.96959 3.27885 3.33590 3.46869 3.49880 3.80751 3.97535 4.12853 4.39283 4.40975 4.41590 4.49551 4.60177 4.71619 4.77121 4.91108 5.01301 5.10565 5.23273 5.26656 5.34147 5.51265 5.57453 5.59047 5.63061 5.70633 5.76101 5.89896 5.97716 5.99911 6.10623 6.25828 6.29464 6.33217 6.52599 6.58394 6.60144 6.64178 6.86948 7.41097 7.92335 7.99739 8.07630 8.29564 8.90214 9.68309 10.05599 11.17648 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.029094 B = 0.002036 C = 0.001982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.155824 B =13751.746771 C =14126.561159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.023 3.977 3 Si 0.881 3.119 4 H -0.289 1.289 5 H -0.303 1.303 6 H -0.270 1.270 7 C -0.259 4.259 8 H 0.086 0.914 9 N -0.606 5.606 10 C 0.150 3.850 11 C -0.141 4.141 12 C 0.150 3.850 13 N -0.715 5.715 14 C 0.554 3.446 15 O -0.527 6.527 16 C -0.107 4.107 17 C -0.077 4.077 18 C -0.102 4.102 19 C -0.097 4.097 20 C 0.111 3.889 21 N -0.242 5.242 22 C -0.051 4.051 23 C -0.044 4.044 24 N -0.262 5.262 25 N -0.072 5.072 26 C -0.044 4.044 27 C -0.140 4.140 28 C 0.129 3.871 29 H 0.263 0.737 30 H 0.026 0.974 31 H 0.066 0.934 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.086 0.914 35 H 0.397 0.603 36 H 0.140 0.860 37 H 0.146 0.854 38 H 0.139 0.861 39 H 0.195 0.805 40 H 0.196 0.804 41 H 0.157 0.843 42 H 0.071 0.929 43 H 0.060 0.940 44 H 0.078 0.922 45 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.791 -11.759 -20.093 30.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.176 4.176 3 Si 0.712 3.288 4 H -0.217 1.217 5 H -0.231 1.231 6 H -0.195 1.195 7 C -0.388 4.388 8 H 0.104 0.896 9 N -0.330 5.330 10 C 0.023 3.977 11 C -0.182 4.182 12 C 0.047 3.953 13 N -0.366 5.366 14 C 0.339 3.661 15 O -0.404 6.404 16 C -0.111 4.111 17 C -0.096 4.096 18 C -0.121 4.121 19 C -0.118 4.118 20 C 0.020 3.980 21 N -0.030 5.030 22 C -0.199 4.199 23 C -0.199 4.199 24 N -0.128 5.128 25 N -0.051 5.051 26 C -0.064 4.064 27 C -0.180 4.180 28 C 0.003 3.997 29 H 0.072 0.928 30 H 0.044 0.956 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.104 0.896 35 H 0.232 0.768 36 H 0.158 0.842 37 H 0.164 0.836 38 H 0.157 0.843 39 H 0.212 0.788 40 H 0.213 0.787 41 H 0.175 0.825 42 H 0.090 0.910 43 H 0.079 0.921 44 H 0.096 0.904 45 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 20.149 -11.193 -17.770 29.104 hybrid contribution 0.103 0.574 -1.786 1.878 sum 20.252 -10.620 -19.555 30.089 Atomic orbital electron populations 1.69833 1.05715 1.26564 1.52948 1.25292 0.95247 0.97569 0.99521 0.86979 0.80161 0.84690 0.76999 1.21652 1.23075 1.19475 1.18926 0.84871 0.94796 1.40175 0.89614 1.44403 1.08722 1.33288 1.46546 1.20898 0.92389 0.91370 0.92993 1.22446 0.99445 0.97916 0.98353 1.21145 0.94455 0.93168 0.86552 1.46205 1.15063 1.57851 1.17453 1.18060 0.81804 0.79101 0.87118 1.90824 1.63855 1.57335 1.28370 1.19982 0.94586 1.01425 0.95062 1.21588 1.00076 0.96175 0.91801 1.20994 0.93861 0.97593 0.99657 1.21074 0.95304 1.00046 0.95339 1.17502 0.81868 1.01905 0.96677 1.44780 1.11832 1.38158 1.08194 1.23851 0.93680 1.04815 0.97525 1.23705 0.98888 1.05580 0.91751 1.75179 1.10121 1.11698 1.15832 1.78492 0.99440 1.18525 1.08619 1.21075 0.93857 0.92960 0.98544 1.22352 0.97404 0.98377 0.99890 1.21311 0.97356 0.92049 0.89034 0.92754 0.95608 0.91503 0.92106 0.91740 0.89599 0.76842 0.84242 0.83634 0.84276 0.78833 0.78698 0.82529 0.91044 0.92144 0.90439 0.95393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.35 13.97 55.49 0.78 -26.57 16 2 C 0.02 0.64 5.23 -17.43 -0.09 0.55 16 3 Si 0.88 21.97 24.34 -169.99 -4.14 17.83 16 4 H -0.29 -6.85 6.62 56.52 0.37 -6.48 16 5 H -0.30 -7.72 7.11 56.52 0.40 -7.32 16 6 H -0.27 -6.67 6.63 56.52 0.37 -6.29 16 7 C -0.26 -7.09 10.04 -15.06 -0.15 -7.24 16 8 H 0.09 2.51 8.06 -52.49 -0.42 2.08 16 9 N -0.61 -14.00 2.77 -172.32 -0.48 -14.47 16 10 C 0.15 2.95 6.50 -3.71 -0.02 2.93 16 11 C -0.14 -2.34 5.68 -26.45 -0.15 -2.49 16 12 C 0.15 2.29 2.42 -67.73 -0.16 2.13 16 13 N -0.72 -8.54 5.03 -54.55 -0.27 -8.82 16 14 C 0.55 7.29 7.74 -12.32 -0.10 7.20 16 15 O -0.53 -9.11 16.01 5.32 0.09 -9.03 16 16 C -0.11 -1.06 5.87 -104.99 -0.62 -1.68 16 17 C -0.08 -0.49 9.54 -39.16 -0.37 -0.87 16 18 C -0.10 -0.46 10.02 -39.67 -0.40 -0.86 16 19 C -0.10 -0.51 9.45 -39.32 -0.37 -0.88 16 20 C 0.11 0.97 6.66 -83.62 -0.56 0.41 16 21 N -0.24 -2.35 3.56 -10.50 -0.04 -2.38 16 22 C -0.05 -0.33 10.91 -16.67 -0.18 -0.51 16 23 C -0.04 -0.33 12.05 -17.73 -0.21 -0.54 16 24 N -0.26 -3.15 12.40 30.24 0.37 -2.77 16 25 N -0.07 -0.92 12.42 60.35 0.75 -0.17 16 26 C -0.04 -0.47 9.16 -39.00 -0.36 -0.83 16 27 C -0.14 -2.23 5.55 -26.61 -0.15 -2.38 16 28 C 0.13 2.68 4.21 -3.71 -0.02 2.66 16 29 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 30 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 1.31 7.93 -51.93 -0.41 0.90 16 32 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.09 1.47 7.58 -51.92 -0.39 1.08 16 35 H 0.40 3.45 6.63 -40.82 -0.27 3.18 16 36 H 0.14 0.58 6.40 -52.49 -0.34 0.25 16 37 H 0.15 0.23 8.06 -52.49 -0.42 -0.20 16 38 H 0.14 0.29 6.77 -52.48 -0.36 -0.07 16 39 H 0.19 0.33 7.12 -52.49 -0.37 -0.05 16 40 H 0.20 0.70 8.06 -52.49 -0.42 0.28 16 41 H 0.16 2.00 7.29 -52.49 -0.38 1.62 16 42 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 43 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.08 1.76 4.49 -51.93 -0.23 1.52 16 45 H 0.03 0.59 7.07 -51.93 -0.37 0.22 16 LS Contribution 366.36 15.07 5.52 5.52 Total: -1.00 -35.93 366.36 -7.03 -42.96 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -5.70 Total: 0.30 kcal Atomic # 6 Polarization: 1.51 SS G_CDS: -3.91 Total: -2.40 kcal Atomic # 7 Polarization: -56.30 SS G_CDS: 1.11 Total: -55.19 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: 0.09 Total: -9.03 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.14 Total: 17.83 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -35.93 -7.03 -42.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611115950.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.421 kcal (2) G-P(sol) polarization free energy of solvation -35.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.957 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds