Wall clock time and date at job start Sat Apr 11 2020 06:25:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86801 * 119.99829 * 2 1 4 4 H 1.48491 * 109.47248 * 270.00187 * 3 2 1 5 5 H 1.48503 * 109.47212 * 30.00217 * 3 2 1 6 6 H 1.48502 * 109.46762 * 150.00093 * 3 2 1 7 7 C 1.38814 * 120.00132 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99818 * 191.93478 * 7 2 1 9 9 N 1.36938 * 120.00023 * 11.94151 * 7 2 1 10 10 C 1.46917 * 120.63160 * 208.64654 * 9 7 2 11 11 C 1.53189 * 108.89626 * 233.67195 * 10 9 7 12 12 C 1.53040 * 109.31057 * 305.29587 * 11 10 9 13 13 N 1.46504 * 109.46108 * 181.38286 * 12 11 10 14 14 C 1.34774 * 120.00073 * 154.99246 * 13 12 11 15 15 O 1.21582 * 120.00170 * 0.02562 * 14 13 12 16 16 C 1.47625 * 120.00047 * 179.97438 * 14 13 12 17 17 C 1.39629 * 120.18652 * 353.93776 * 16 14 13 18 18 C 1.37869 * 119.91263 * 179.67737 * 17 16 14 19 19 C 1.38504 * 120.30317 * 0.61753 * 18 17 16 20 20 C 1.38103 * 120.38195 * 359.67836 * 19 18 17 21 21 C 1.38721 * 120.07987 * 0.02562 * 20 19 18 22 22 N 1.39802 * 120.15274 * 179.97438 * 21 20 19 23 23 C 1.36327 * 126.87029 * 299.49290 * 22 21 20 24 24 C 1.34958 * 106.78233 * 179.90464 * 23 22 21 25 25 N 1.33381 * 109.01409 * 0.37165 * 24 23 22 26 26 N 1.28764 * 109.92997 * 359.76637 * 25 24 23 27 27 C 1.53039 * 109.54363 * 61.36115 * 12 11 10 28 28 C 1.47208 * 120.81336 * 28.77789 * 9 7 2 29 29 H 0.96993 * 120.00270 * 359.97438 * 1 2 3 30 30 H 1.09006 * 109.59387 * 113.81036 * 10 9 7 31 31 H 1.09004 * 109.58750 * 353.52832 * 10 9 7 32 32 H 1.09005 * 109.49634 * 65.24288 * 11 10 9 33 33 H 1.08998 * 109.49941 * 185.33994 * 11 10 9 34 34 H 1.09008 * 109.45941 * 301.33803 * 12 11 10 35 35 H 0.97000 * 120.00016 * 334.99762 * 13 12 11 36 36 H 1.07996 * 120.04439 * 359.97438 * 17 16 14 37 37 H 1.08000 * 119.84647 * 180.29679 * 18 17 16 38 38 H 1.07991 * 119.80905 * 179.69917 * 19 18 17 39 39 H 1.08004 * 119.96002 * 180.02562 * 20 19 18 40 40 H 1.08000 * 126.60942 * 0.04409 * 23 22 21 41 41 H 1.07995 * 125.49265 * 180.11841 * 24 23 22 42 42 H 1.09003 * 109.49289 * 58.58343 * 27 12 11 43 43 H 1.09000 * 109.49920 * 178.65156 * 27 12 11 44 44 H 1.08997 * 109.53494 * 6.54560 * 28 9 7 45 45 H 1.08997 * 109.68084 * 246.23598 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0728 -1.2123 0.1929 9 7 1.3479 -2.3751 -0.2464 10 6 1.8276 -3.6401 0.3266 11 6 2.0040 -4.6606 -0.8021 12 6 0.6931 -4.7844 -1.5820 13 7 0.8481 -5.7840 -2.6418 14 6 -0.2324 -6.4320 -3.1203 15 8 -1.3360 -6.1867 -2.6727 16 6 -0.0763 -7.4388 -4.1885 17 6 1.1668 -7.6330 -4.7940 18 6 1.3078 -8.5795 -5.7865 19 6 0.2185 -9.3308 -6.1956 20 6 -1.0180 -9.1447 -5.6095 21 6 -1.1765 -8.2010 -4.6052 22 7 -2.4277 -8.0109 -4.0112 23 6 -3.5773 -7.6217 -4.6320 24 6 -4.5347 -7.5696 -3.6823 25 7 -4.0003 -7.9064 -2.5076 26 7 -2.7500 -8.1767 -2.6555 27 6 0.3381 -3.4322 -2.2046 28 6 0.1429 -2.3977 -1.0917 29 1 -0.4850 0.8400 0.0004 30 1 1.1001 -4.0141 1.0470 31 1 2.7836 -3.4766 0.8241 32 1 2.7963 -4.3280 -1.4728 33 1 2.2683 -5.6296 -0.3785 34 1 -0.1041 -5.0933 -0.9057 35 1 1.7285 -5.9795 -2.9991 36 1 2.0179 -7.0459 -4.4819 37 1 2.2709 -8.7321 -6.2508 38 1 0.3369 -10.0666 -6.9771 39 1 -1.8627 -9.7346 -5.9334 40 1 -3.6989 -7.4001 -5.6820 41 1 -5.5663 -7.2952 -3.8463 42 1 1.1462 -3.1112 -2.8620 43 1 -0.5830 -3.5270 -2.7796 44 1 -0.0122 -1.4126 -1.5317 45 1 -0.7235 -2.6691 -0.4886 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000612041323.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:25:48 Heat of formation + Delta-G solvation = 133.529457 kcal Electronic energy + Delta-G solvation = -29509.319161 eV Core-core repulsion = 25530.489840 eV Total energy + Delta-G solvation = -3978.829322 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 2.55 seconds Orbital eigenvalues (eV) -42.09256 -40.34020 -38.83499 -37.20871 -34.84102 -34.19432 -32.54906 -31.52927 -30.76744 -30.04017 -29.82960 -29.26883 -25.45340 -24.39896 -23.99581 -22.32998 -22.20916 -21.80355 -21.34844 -20.35184 -19.48150 -18.65158 -17.63481 -16.79255 -16.41473 -15.65215 -15.56582 -15.20631 -15.08808 -14.76313 -14.62544 -14.50961 -14.22628 -13.92292 -13.64787 -13.47468 -13.16462 -12.98704 -12.60241 -12.49564 -12.40725 -12.02264 -11.72024 -11.50416 -11.14470 -11.08147 -10.92416 -10.75845 -10.63288 -10.38601 -10.21932 -10.06795 -9.90131 -9.76937 -9.58584 -9.53469 -9.41418 -8.92930 -8.71906 -8.42904 -6.66571 -5.76179 -3.22950 0.22909 0.56372 1.47141 2.14319 2.64631 2.71385 3.17028 3.37885 3.43203 3.43900 3.45782 4.18383 4.30944 4.40740 4.48509 4.49027 4.70258 4.77771 4.94468 5.00472 5.15893 5.19695 5.32385 5.40400 5.44226 5.45497 5.61685 5.62763 5.74402 5.81046 5.82210 6.05535 6.08304 6.19097 6.23344 6.32954 6.43221 6.59862 6.65078 6.73212 6.77463 6.90153 6.94712 7.40341 7.62209 7.73696 7.79690 8.26679 8.31995 8.47049 9.22112 9.84351 10.41672 11.31652 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015826 B = 0.002793 C = 0.002541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1768.794245 B =10023.787284 C =11014.509911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.001 3.999 3 Si 0.906 3.094 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.252 4.252 8 H 0.066 0.934 9 N -0.593 5.593 10 C 0.148 3.852 11 C -0.138 4.138 12 C 0.153 3.847 13 N -0.716 5.716 14 C 0.546 3.454 15 O -0.511 6.511 16 C -0.110 4.110 17 C -0.077 4.077 18 C -0.112 4.112 19 C -0.086 4.086 20 C -0.115 4.115 21 C 0.180 3.820 22 N -0.322 5.322 23 C 0.022 3.978 24 C -0.074 4.074 25 N -0.238 5.238 26 N -0.015 5.015 27 C -0.145 4.145 28 C 0.172 3.828 29 H 0.254 0.746 30 H 0.021 0.979 31 H 0.058 0.942 32 H 0.062 0.938 33 H 0.056 0.944 34 H 0.083 0.917 35 H 0.392 0.608 36 H 0.139 0.861 37 H 0.138 0.862 38 H 0.139 0.861 39 H 0.138 0.862 40 H 0.188 0.812 41 H 0.184 0.816 42 H 0.053 0.947 43 H 0.051 0.949 44 H 0.095 0.905 45 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.605 -20.552 -17.015 26.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.197 4.197 3 Si 0.736 3.264 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.382 4.382 8 H 0.084 0.916 9 N -0.316 5.316 10 C 0.021 3.979 11 C -0.178 4.178 12 C 0.050 3.950 13 N -0.367 5.367 14 C 0.331 3.669 15 O -0.387 6.387 16 C -0.115 4.115 17 C -0.096 4.096 18 C -0.131 4.131 19 C -0.105 4.105 20 C -0.136 4.136 21 C 0.088 3.912 22 N -0.106 5.106 23 C -0.127 4.127 24 C -0.228 4.228 25 N -0.109 5.109 26 N 0.007 4.993 27 C -0.185 4.185 28 C 0.046 3.954 29 H 0.065 0.935 30 H 0.039 0.961 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.102 0.898 35 H 0.227 0.773 36 H 0.157 0.843 37 H 0.156 0.844 38 H 0.157 0.843 39 H 0.156 0.844 40 H 0.205 0.795 41 H 0.201 0.799 42 H 0.072 0.928 43 H 0.069 0.931 44 H 0.113 0.887 45 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 0.177 -20.546 -15.220 25.570 hybrid contribution 0.572 1.151 -1.402 1.902 sum 0.749 -19.396 -16.623 25.555 Atomic orbital electron populations 1.69979 1.05226 1.25479 1.54166 1.25125 0.95407 0.98401 1.00766 0.86239 0.78980 0.83593 0.77618 1.21493 1.21685 1.20445 1.19197 0.91172 0.84075 1.43760 0.91612 1.44149 1.30430 1.02478 1.54549 1.20834 0.98038 0.86776 0.92244 1.22339 0.96031 0.99812 0.99656 1.21091 0.98835 0.87350 0.87762 1.46225 1.08973 1.41331 1.40190 1.17987 0.85374 0.81211 0.82349 1.90884 1.24703 1.64657 1.58423 1.20254 0.93715 0.98118 0.99386 1.21361 0.95701 0.97316 0.95194 1.21291 0.99603 0.95416 0.96769 1.21224 0.91540 0.98769 0.98918 1.21140 0.99214 0.96789 0.96438 1.17287 0.82431 0.96550 0.94935 1.47549 1.06436 1.48007 1.08569 1.23417 0.85568 1.02800 1.00937 1.23107 1.01625 1.09995 0.88107 1.74291 1.01920 1.11420 1.23307 1.82183 1.07315 1.18949 0.90870 1.22558 1.00081 0.95376 1.00474 1.20859 0.87830 0.97588 0.89119 0.93544 0.96136 0.92327 0.91903 0.92571 0.89848 0.77350 0.84328 0.84374 0.84301 0.84449 0.79513 0.79882 0.92788 0.93073 0.88715 0.96184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.69 10.94 55.49 0.61 -26.09 16 2 C 0.00 0.04 5.05 -17.43 -0.09 -0.05 16 3 Si 0.91 21.80 29.57 -169.99 -5.03 16.77 16 4 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.25 -6.94 9.61 -15.06 -0.14 -7.09 16 8 H 0.07 1.76 7.86 -52.49 -0.41 1.34 16 9 N -0.59 -15.04 3.01 -172.10 -0.52 -15.56 16 10 C 0.15 3.11 6.50 -3.72 -0.02 3.09 16 11 C -0.14 -2.34 5.55 -26.61 -0.15 -2.49 16 12 C 0.15 2.75 2.41 -67.89 -0.16 2.58 16 13 N -0.72 -10.38 5.03 -54.77 -0.28 -10.65 16 14 C 0.55 8.65 7.70 -12.43 -0.10 8.55 16 15 O -0.51 -10.28 13.00 5.29 0.07 -10.21 16 16 C -0.11 -1.31 5.89 -104.82 -0.62 -1.93 16 17 C -0.08 -0.61 9.52 -39.20 -0.37 -0.99 16 18 C -0.11 -0.63 10.02 -39.62 -0.40 -1.03 16 19 C -0.09 -0.46 10.03 -39.53 -0.40 -0.86 16 20 C -0.12 -0.87 9.85 -39.45 -0.39 -1.26 16 21 C 0.18 2.08 6.18 -83.32 -0.51 1.57 16 22 N -0.32 -4.45 2.53 -10.32 -0.03 -4.48 16 23 C 0.02 0.25 11.50 -16.72 -0.19 0.05 16 24 C -0.07 -0.93 11.86 -18.04 -0.21 -1.15 16 25 N -0.24 -4.04 12.33 30.09 0.37 -3.66 16 26 N -0.01 -0.26 11.51 60.35 0.69 0.44 16 27 C -0.14 -2.97 5.65 -26.61 -0.15 -3.12 16 28 C 0.17 4.30 5.30 -3.55 -0.02 4.28 16 29 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 30 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 1.18 7.93 -51.93 -0.41 0.76 16 32 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.08 1.74 7.58 -51.92 -0.39 1.35 16 35 H 0.39 4.31 6.67 -40.82 -0.27 4.04 16 36 H 0.14 0.84 6.45 -52.49 -0.34 0.50 16 37 H 0.14 0.39 8.06 -52.49 -0.42 -0.03 16 38 H 0.14 0.33 8.06 -52.49 -0.42 -0.09 16 39 H 0.14 0.78 8.06 -52.48 -0.42 0.36 16 40 H 0.19 1.23 8.06 -52.49 -0.42 0.80 16 41 H 0.18 1.61 8.06 -52.49 -0.42 1.18 16 42 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 44 H 0.09 2.64 5.95 -51.93 -0.31 2.33 16 45 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 371.75 15.07 5.60 5.60 Total: -1.00 -36.68 371.75 -8.35 -45.04 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -5.92 Total: 2.62 kcal Atomic # 6 Polarization: 4.11 SS G_CDS: -3.93 Total: 0.18 kcal Atomic # 7 Polarization: -60.85 SS G_CDS: 0.85 Total: -60.00 kcal Atomic # 8 Polarization: -10.28 SS G_CDS: 0.07 Total: -10.21 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.03 Total: 16.77 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -36.68 -8.35 -45.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612041323.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.567 kcal (2) G-P(sol) polarization free energy of solvation -36.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 141.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 133.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.55 seconds