Wall clock time and date at job start Sat Apr 11 2020 06:25:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86801 * 119.99829 * 2 1 4 4 H 1.48491 * 109.47248 * 270.00187 * 3 2 1 5 5 H 1.48503 * 109.47212 * 30.00217 * 3 2 1 6 6 H 1.48502 * 109.46762 * 150.00093 * 3 2 1 7 7 C 1.38814 * 120.00132 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99818 * 191.93478 * 7 2 1 9 9 N 1.36938 * 120.00023 * 11.94151 * 7 2 1 10 10 C 1.46917 * 120.63160 * 208.64654 * 9 7 2 11 11 C 1.53189 * 108.89626 * 233.67195 * 10 9 7 12 12 C 1.53040 * 109.31057 * 305.29587 * 11 10 9 13 13 N 1.46504 * 109.46108 * 181.38286 * 12 11 10 14 14 C 1.34774 * 120.00073 * 154.99246 * 13 12 11 15 15 O 1.21582 * 120.00170 * 0.02562 * 14 13 12 16 16 C 1.47625 * 120.00047 * 179.97438 * 14 13 12 17 17 C 1.39629 * 120.18652 * 353.93776 * 16 14 13 18 18 C 1.37869 * 119.91263 * 179.67737 * 17 16 14 19 19 C 1.38504 * 120.30317 * 0.61753 * 18 17 16 20 20 C 1.38103 * 120.38195 * 359.67836 * 19 18 17 21 21 C 1.38721 * 120.07987 * 0.02562 * 20 19 18 22 22 N 1.39802 * 120.15274 * 179.97438 * 21 20 19 23 23 C 1.36327 * 126.87029 * 299.49290 * 22 21 20 24 24 C 1.34958 * 106.78233 * 179.90464 * 23 22 21 25 25 N 1.33381 * 109.01409 * 0.37165 * 24 23 22 26 26 N 1.28764 * 109.92997 * 359.76637 * 25 24 23 27 27 C 1.53039 * 109.54363 * 61.36115 * 12 11 10 28 28 C 1.47208 * 120.81336 * 28.77789 * 9 7 2 29 29 H 0.96993 * 120.00270 * 359.97438 * 1 2 3 30 30 H 1.09006 * 109.59387 * 113.81036 * 10 9 7 31 31 H 1.09004 * 109.58750 * 353.52832 * 10 9 7 32 32 H 1.09005 * 109.49634 * 65.24288 * 11 10 9 33 33 H 1.08998 * 109.49941 * 185.33994 * 11 10 9 34 34 H 1.09008 * 109.45941 * 301.33803 * 12 11 10 35 35 H 0.97000 * 120.00016 * 334.99762 * 13 12 11 36 36 H 1.07996 * 120.04439 * 359.97438 * 17 16 14 37 37 H 1.08000 * 119.84647 * 180.29679 * 18 17 16 38 38 H 1.07991 * 119.80905 * 179.69917 * 19 18 17 39 39 H 1.08004 * 119.96002 * 180.02562 * 20 19 18 40 40 H 1.08000 * 126.60942 * 0.04409 * 23 22 21 41 41 H 1.07995 * 125.49265 * 180.11841 * 24 23 22 42 42 H 1.09003 * 109.49289 * 58.58343 * 27 12 11 43 43 H 1.09000 * 109.49920 * 178.65156 * 27 12 11 44 44 H 1.08997 * 109.53494 * 6.54560 * 28 9 7 45 45 H 1.08997 * 109.68084 * 246.23598 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0728 -1.2123 0.1929 9 7 1.3479 -2.3751 -0.2464 10 6 1.8276 -3.6401 0.3266 11 6 2.0040 -4.6606 -0.8021 12 6 0.6931 -4.7844 -1.5820 13 7 0.8481 -5.7840 -2.6418 14 6 -0.2324 -6.4320 -3.1203 15 8 -1.3360 -6.1867 -2.6727 16 6 -0.0763 -7.4388 -4.1885 17 6 1.1668 -7.6330 -4.7940 18 6 1.3078 -8.5795 -5.7865 19 6 0.2185 -9.3308 -6.1956 20 6 -1.0180 -9.1447 -5.6095 21 6 -1.1765 -8.2010 -4.6052 22 7 -2.4277 -8.0109 -4.0112 23 6 -3.5773 -7.6217 -4.6320 24 6 -4.5347 -7.5696 -3.6823 25 7 -4.0003 -7.9064 -2.5076 26 7 -2.7500 -8.1767 -2.6555 27 6 0.3381 -3.4322 -2.2046 28 6 0.1429 -2.3977 -1.0917 29 1 -0.4850 0.8400 0.0004 30 1 1.1001 -4.0141 1.0470 31 1 2.7836 -3.4766 0.8241 32 1 2.7963 -4.3280 -1.4728 33 1 2.2683 -5.6296 -0.3785 34 1 -0.1041 -5.0933 -0.9057 35 1 1.7285 -5.9795 -2.9991 36 1 2.0179 -7.0459 -4.4819 37 1 2.2709 -8.7321 -6.2508 38 1 0.3369 -10.0666 -6.9771 39 1 -1.8627 -9.7346 -5.9334 40 1 -3.6989 -7.4001 -5.6820 41 1 -5.5663 -7.2952 -3.8463 42 1 1.1462 -3.1112 -2.8620 43 1 -0.5830 -3.5270 -2.7796 44 1 -0.0122 -1.4126 -1.5317 45 1 -0.7235 -2.6691 -0.4886 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000612041323.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:25:45 Heat of formation + Delta-G solvation = 107.955056 kcal Electronic energy + Delta-G solvation = -29510.428151 eV Core-core repulsion = 25530.489840 eV Total energy + Delta-G solvation = -3979.938311 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -43.04019 -41.36933 -39.86662 -38.75775 -36.20110 -35.30876 -34.09038 -32.69212 -31.74221 -31.64755 -31.01184 -30.54842 -27.14228 -25.55983 -24.76002 -23.97112 -23.75923 -22.76987 -22.36897 -21.53791 -21.04299 -19.61518 -18.87345 -18.38010 -17.49514 -16.90885 -16.65613 -16.27335 -16.16320 -16.00001 -15.74140 -15.50985 -15.38783 -15.32953 -15.08941 -14.88423 -14.53934 -14.39841 -14.12145 -13.76151 -13.26233 -13.16803 -12.98892 -12.69393 -12.66689 -12.63740 -12.54887 -12.17266 -12.13691 -12.05173 -11.92765 -11.61402 -11.59706 -11.45131 -10.94361 -10.63179 -10.29943 -10.19993 -9.98011 -9.78869 -8.74512 -7.88369 -5.39284 -0.50084 -0.00779 0.58071 1.33680 1.46548 1.47698 1.57337 1.69720 1.80470 2.03088 2.49339 2.62436 3.27518 3.50400 3.57681 3.62570 3.70561 3.81699 3.93118 4.00840 4.08470 4.19140 4.22388 4.26711 4.29167 4.36905 4.40692 4.60049 4.61297 4.71411 4.74146 4.80274 4.97176 4.99850 5.05516 5.09752 5.16669 5.25054 5.28180 5.31361 5.41188 5.45948 5.60000 5.60426 5.66136 5.95975 6.36216 6.49357 7.09865 7.18544 7.25633 7.79398 8.33716 9.18264 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015826 B = 0.002793 C = 0.002541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1768.794245 B =10023.787284 C =11014.509911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C -0.058 4.058 3 Si 0.976 3.024 4 H -0.283 1.283 5 H -0.298 1.298 6 H -0.263 1.263 7 C -0.260 4.260 8 H 0.077 0.923 9 N -0.609 5.609 10 C 0.141 3.859 11 C -0.120 4.120 12 C 0.166 3.834 13 N -0.703 5.703 14 C 0.539 3.461 15 O -0.564 6.564 16 C -0.140 4.140 17 C -0.073 4.073 18 C -0.099 4.099 19 C -0.066 4.066 20 C -0.111 4.111 21 C 0.143 3.857 22 N -0.317 5.317 23 C 0.034 3.966 24 C -0.090 4.090 25 N -0.283 5.283 26 N -0.075 5.075 27 C -0.125 4.125 28 C 0.183 3.817 29 H 0.249 0.751 30 H 0.006 0.994 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.046 0.954 35 H 0.413 0.587 36 H 0.158 0.842 37 H 0.178 0.822 38 H 0.181 0.819 39 H 0.156 0.844 40 H 0.235 0.765 41 H 0.213 0.787 42 H 0.065 0.935 43 H 0.037 0.963 44 H 0.062 0.938 45 H -0.019 1.019 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.989 -22.658 -20.676 30.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.252 4.252 3 Si 0.803 3.197 4 H -0.210 1.210 5 H -0.225 1.225 6 H -0.188 1.188 7 C -0.390 4.390 8 H 0.095 0.905 9 N -0.333 5.333 10 C 0.015 3.985 11 C -0.160 4.160 12 C 0.061 3.939 13 N -0.355 5.355 14 C 0.327 3.673 15 O -0.443 6.443 16 C -0.145 4.145 17 C -0.092 4.092 18 C -0.117 4.117 19 C -0.085 4.085 20 C -0.131 4.131 21 C 0.052 3.948 22 N -0.101 5.101 23 C -0.116 4.116 24 C -0.246 4.246 25 N -0.152 5.152 26 N -0.052 5.052 27 C -0.166 4.166 28 C 0.056 3.944 29 H 0.058 0.942 30 H 0.024 0.976 31 H 0.090 0.910 32 H 0.100 0.900 33 H 0.108 0.892 34 H 0.064 0.936 35 H 0.251 0.749 36 H 0.175 0.825 37 H 0.196 0.804 38 H 0.198 0.802 39 H 0.173 0.827 40 H 0.251 0.749 41 H 0.230 0.770 42 H 0.084 0.916 43 H 0.056 0.944 44 H 0.080 0.920 45 H -0.001 1.001 Dipole moment (debyes) X Y Z Total from point charges 3.647 -22.712 -18.877 29.757 hybrid contribution -0.457 1.711 -0.384 1.812 sum 3.189 -21.002 -19.261 28.675 Atomic orbital electron populations 1.70187 1.07011 1.25818 1.55906 1.25995 0.96147 1.01998 1.01087 0.85137 0.78005 0.78906 0.77610 1.21004 1.22509 1.18752 1.19629 0.91828 0.84941 1.42628 0.90489 1.44390 1.30103 1.03648 1.55166 1.21036 0.97899 0.85955 0.93604 1.22136 0.95450 1.00100 0.98278 1.20620 0.98496 0.86630 0.88127 1.45872 1.10091 1.40270 1.39280 1.18728 0.84543 0.81419 0.82653 1.90871 1.26717 1.66333 1.60350 1.20047 0.95920 0.98731 0.99821 1.21639 0.94379 0.97945 0.95244 1.21785 1.01380 0.93443 0.95068 1.21777 0.90105 0.98248 0.98325 1.21429 1.01087 0.95525 0.95032 1.17828 0.81598 0.98688 0.96682 1.47746 1.07865 1.46749 1.07714 1.24216 0.84344 1.00480 1.02605 1.23774 1.03454 1.09981 0.87396 1.74224 1.02472 1.12871 1.25650 1.82065 1.07738 1.21988 0.93456 1.22263 0.99845 0.95761 0.98700 1.20524 0.86962 0.97137 0.89749 0.94195 0.97637 0.90991 0.89972 0.89221 0.93586 0.74861 0.82493 0.80421 0.80154 0.82650 0.74908 0.77005 0.91582 0.94438 0.91970 1.00110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.27 10.94 21.65 0.24 -58.04 16 2 C -0.06 -3.30 5.05 84.86 0.43 -2.87 16 3 Si 0.98 45.40 29.57 68.60 2.03 47.43 16 4 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 5 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 6 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 7 C -0.26 -14.44 9.61 84.03 0.81 -13.63 16 8 H 0.08 4.03 7.86 -2.91 -0.02 4.01 16 9 N -0.61 -31.69 3.01 -698.40 -2.10 -33.79 16 10 C 0.14 5.92 6.50 86.36 0.56 6.48 16 11 C -0.12 -3.87 5.55 30.67 0.17 -3.70 16 12 C 0.17 6.08 2.41 45.02 0.11 6.19 16 13 N -0.70 -19.91 5.03 -445.47 -2.24 -22.15 16 14 C 0.54 17.42 7.70 86.72 0.67 18.09 16 15 O -0.56 -24.22 13.00 -3.97 -0.05 -24.28 16 16 C -0.14 -3.19 5.89 -19.99 -0.12 -3.30 16 17 C -0.07 -0.90 9.52 22.52 0.21 -0.69 16 18 C -0.10 -0.55 10.02 22.25 0.22 -0.32 16 19 C -0.07 -0.34 10.03 22.30 0.22 -0.11 16 20 C -0.11 -1.29 9.85 22.35 0.22 -1.07 16 21 C 0.14 3.15 6.18 38.46 0.24 3.39 16 22 N -0.32 -8.92 2.53 -186.57 -0.47 -9.39 16 23 C 0.03 0.74 11.50 83.24 0.96 1.70 16 24 C -0.09 -2.36 11.86 83.70 0.99 -1.37 16 25 N -0.28 -10.33 12.33 -58.72 -0.72 -11.06 16 26 N -0.08 -2.83 11.51 37.02 0.43 -2.40 16 27 C -0.13 -5.34 5.65 30.67 0.17 -5.16 16 28 C 0.18 9.71 5.30 86.31 0.46 10.16 16 29 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 30 H 0.01 0.25 8.14 -2.38 -0.02 0.23 16 31 H 0.07 2.80 7.93 -2.39 -0.02 2.79 16 32 H 0.08 2.40 8.14 -2.38 -0.02 2.38 16 33 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 34 H 0.05 2.05 7.58 -2.38 -0.02 2.04 16 35 H 0.41 8.01 6.67 -92.71 -0.62 7.40 16 36 H 0.16 1.22 6.45 -2.91 -0.02 1.20 16 37 H 0.18 -0.32 8.06 -2.91 -0.02 -0.34 16 38 H 0.18 -0.48 8.06 -2.92 -0.02 -0.50 16 39 H 0.16 1.19 8.06 -2.91 -0.02 1.16 16 40 H 0.23 2.47 8.06 -2.91 -0.02 2.45 16 41 H 0.21 3.76 8.06 -2.91 -0.02 3.73 16 42 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 43 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 44 H 0.06 3.69 5.95 -2.39 -0.01 3.67 16 45 H -0.02 -1.14 8.14 -2.39 -0.02 -1.16 16 Total: -1.00 -90.26 371.75 3.83 -86.42 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: 0.40 Total: 13.47 kcal Atomic # 6 Polarization: 7.45 SS G_CDS: 6.33 Total: 13.78 kcal Atomic # 7 Polarization: -131.95 SS G_CDS: -4.87 Total: -136.83 kcal Atomic # 8 Polarization: -24.22 SS G_CDS: -0.05 Total: -24.28 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal Total: -90.26 3.83 -86.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612041323.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 194.378 kcal (2) G-P(sol) polarization free energy of solvation -90.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds