Wall clock time and date at job start Sat Apr 11 2020 06:26:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86799 * 120.00216 * 2 1 4 4 H 1.48497 * 109.47395 * 272.95095 * 3 2 1 5 5 H 1.48503 * 109.46870 * 32.94856 * 3 2 1 6 6 H 1.48497 * 109.47202 * 152.94349 * 3 2 1 7 7 C 1.38817 * 119.99982 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99977 * 339.34014 * 7 2 1 9 9 N 1.36939 * 119.99693 * 159.34226 * 7 2 1 10 10 C 1.46924 * 120.63294 * 332.62413 * 9 7 2 11 11 C 1.53193 * 108.77964 * 233.59266 * 10 9 7 12 12 C 1.53039 * 109.30742 * 305.36697 * 11 10 9 13 13 N 1.46503 * 109.45749 * 181.38734 * 12 11 10 14 14 C 1.34781 * 120.00265 * 154.97392 * 13 12 11 15 15 O 1.21578 * 119.99661 * 359.97438 * 14 13 12 16 16 C 1.47658 * 120.00116 * 179.97438 * 14 13 12 17 17 C 1.40238 * 120.49641 * 179.97438 * 16 14 13 18 18 C 1.38021 * 118.35408 * 179.97438 * 17 16 14 19 19 C 1.39152 * 119.25617 * 0.02562 * 18 17 16 20 20 N 1.39493 * 119.52696 * 179.97438 * 19 18 17 21 21 C 1.37234 * 126.50020 * 185.27779 * 20 19 18 22 22 C 1.34582 * 106.82569 * 180.12313 * 21 20 19 23 23 N 1.34178 * 108.23973 * 359.62338 * 22 21 20 24 24 C 1.30456 * 109.38080 * 0.24067 * 23 22 21 25 25 N 1.32433 * 120.94792 * 0.25546 * 19 18 17 26 26 C 1.31640 * 121.79319 * 359.46974 * 25 19 18 27 27 C 1.53036 * 109.53092 * 61.37478 * 12 11 10 28 28 C 1.46926 * 120.63037 * 152.61018 * 9 7 2 29 29 H 0.97001 * 120.00088 * 359.97438 * 1 2 3 30 30 H 1.09006 * 109.58724 * 113.80181 * 10 9 7 31 31 H 1.09002 * 109.70543 * 353.45000 * 10 9 7 32 32 H 1.08994 * 109.49639 * 185.42008 * 11 10 9 33 33 H 1.08988 * 109.52404 * 65.33099 * 11 10 9 34 34 H 1.09005 * 109.46149 * 301.35151 * 12 11 10 35 35 H 0.96999 * 120.00081 * 334.97487 * 13 12 11 36 36 H 1.08004 * 120.81992 * 359.96227 * 17 16 14 37 37 H 1.08002 * 120.36434 * 179.97438 * 18 17 16 38 38 H 1.07997 * 126.58526 * 359.97438 * 21 20 19 39 39 H 1.08007 * 125.88458 * 179.88753 * 22 21 20 40 40 H 1.08004 * 125.72606 * 180.02562 * 24 23 22 41 41 H 1.08000 * 119.67608 * 180.24697 * 26 25 19 42 42 H 1.08995 * 109.49483 * 58.57329 * 27 12 11 43 43 H 1.08999 * 109.50145 * 178.67610 * 27 12 11 44 44 H 1.08996 * 109.58887 * 246.20187 * 28 9 7 45 45 H 1.09008 * 109.58327 * 6.48066 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4353 2.0825 -1.3982 5 1 1.4802 2.6338 0.7615 6 1 3.5775 1.4229 0.6368 7 6 2.0102 -1.2022 -0.0005 8 1 1.5223 -2.1075 0.3290 9 7 3.3136 -1.2401 -0.4189 10 6 3.8172 -0.2584 -1.3892 11 6 4.4620 -1.0077 -2.5595 12 6 5.5287 -1.9642 -2.0216 13 7 6.1705 -2.6585 -3.1408 14 6 7.4212 -3.1424 -3.0056 15 8 8.0169 -3.0023 -1.9550 16 6 8.0678 -3.8426 -4.1333 17 6 9.3689 -4.3497 -4.0042 18 6 9.9305 -4.9970 -5.0862 19 6 9.1941 -5.1239 -6.2601 20 7 9.7563 -5.7765 -7.3572 21 6 9.2042 -5.8942 -8.6080 22 6 10.0756 -6.5980 -9.3539 23 7 11.1366 -6.8979 -8.5892 24 6 10.9582 -6.4120 -7.3917 25 7 7.9692 -4.6290 -6.3524 26 6 7.3937 -4.0092 -5.3437 27 6 4.8748 -2.9899 -1.0930 28 6 4.2350 -2.2630 0.0941 29 1 -0.4850 0.8400 0.0004 30 1 4.5596 0.3805 -0.9108 31 1 2.9921 0.3521 -1.7563 32 1 4.9244 -0.2920 -3.2391 33 1 3.6997 -1.5756 -3.0926 34 1 6.2779 -1.3984 -1.4678 35 1 5.6954 -2.7699 -3.9791 36 1 9.9179 -4.2364 -3.0811 37 1 10.9306 -5.3998 -5.0226 38 1 8.2520 -5.5000 -8.9310 39 1 9.9456 -6.8706 -10.3909 40 1 11.6492 -6.4994 -6.5663 41 1 6.3916 -3.6223 -5.4553 42 1 4.1083 -3.5390 -1.6397 43 1 5.6311 -3.6852 -0.7288 44 1 5.0115 -1.7878 0.6935 45 1 3.6845 -2.9758 0.7081 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000730553750.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:26:39 Heat of formation + Delta-G solvation = 104.072133 kcal Electronic energy + Delta-G solvation = -28287.168818 eV Core-core repulsion = 24307.062131 eV Total energy + Delta-G solvation = -3980.106687 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 2.61 seconds Orbital eigenvalues (eV) -42.87667 -41.01611 -39.56863 -37.72130 -34.91717 -34.71073 -33.29642 -32.39817 -31.10879 -30.51485 -30.12817 -29.53890 -25.79380 -24.81782 -24.35960 -23.06657 -22.29655 -21.75337 -21.42020 -20.69073 -19.82947 -19.39811 -18.11767 -17.27098 -16.77339 -16.31514 -15.99751 -15.82409 -15.27039 -15.17921 -14.81100 -14.42989 -14.34599 -14.23647 -14.13022 -13.95140 -13.86693 -13.71968 -13.27380 -13.17077 -13.00116 -12.45886 -12.07528 -11.87784 -11.29084 -11.10254 -10.90904 -10.68821 -10.67634 -10.65509 -10.64452 -10.37674 -10.22878 -10.03734 -9.81368 -9.53640 -9.39728 -9.07331 -8.94738 -8.69181 -7.05853 -6.00198 -3.36596 -0.24044 0.48783 1.52550 1.84554 2.54289 2.63649 2.90008 3.26103 3.29672 3.44940 3.47329 3.52331 3.88404 4.10596 4.13961 4.19611 4.40594 4.47477 4.59855 4.80215 4.87933 4.91996 5.02565 5.06554 5.22718 5.25214 5.31393 5.39402 5.54963 5.60407 5.67673 5.72285 5.93140 5.94593 6.07177 6.15335 6.21224 6.28554 6.50054 6.52748 6.53402 6.56766 6.59491 6.82996 7.04374 7.32830 7.44111 7.89948 7.98060 8.27516 8.87863 9.66087 10.02997 11.15637 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.029160 B = 0.001947 C = 0.001897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.980154 B =14376.255652 C =14753.925736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.023 3.977 3 Si 0.881 3.119 4 H -0.289 1.289 5 H -0.302 1.302 6 H -0.270 1.270 7 C -0.261 4.261 8 H 0.086 0.914 9 N -0.606 5.606 10 C 0.129 3.871 11 C -0.142 4.142 12 C 0.151 3.849 13 N -0.716 5.716 14 C 0.562 3.438 15 O -0.531 6.531 16 C -0.192 4.192 17 C 0.012 3.988 18 C -0.186 4.186 19 C 0.365 3.635 20 N -0.414 5.414 21 C -0.023 4.023 22 C -0.029 4.029 23 N -0.476 5.476 24 C 0.195 3.805 25 N -0.500 5.500 26 C 0.171 3.829 27 C -0.142 4.142 28 C 0.150 3.850 29 H 0.263 0.737 30 H 0.028 0.972 31 H 0.078 0.922 32 H 0.060 0.940 33 H 0.071 0.929 34 H 0.086 0.914 35 H 0.396 0.604 36 H 0.161 0.839 37 H 0.151 0.849 38 H 0.184 0.816 39 H 0.178 0.822 40 H 0.214 0.786 41 H 0.172 0.828 42 H 0.064 0.936 43 H 0.060 0.940 44 H 0.026 0.974 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.283 -10.337 -14.979 27.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.176 4.176 3 Si 0.712 3.288 4 H -0.216 1.216 5 H -0.231 1.231 6 H -0.195 1.195 7 C -0.389 4.389 8 H 0.104 0.896 9 N -0.329 5.329 10 C 0.003 3.997 11 C -0.181 4.181 12 C 0.047 3.953 13 N -0.366 5.366 14 C 0.347 3.653 15 O -0.408 6.408 16 C -0.198 4.198 17 C -0.015 4.015 18 C -0.209 4.209 19 C 0.136 3.864 20 N -0.097 5.097 21 C -0.152 4.152 22 C -0.173 4.173 23 N -0.193 5.193 24 C -0.086 4.086 25 N -0.211 5.211 26 C 0.011 3.989 27 C -0.182 4.182 28 C 0.024 3.976 29 H 0.073 0.927 30 H 0.046 0.954 31 H 0.096 0.904 32 H 0.079 0.921 33 H 0.090 0.910 34 H 0.104 0.896 35 H 0.231 0.769 36 H 0.179 0.821 37 H 0.169 0.831 38 H 0.201 0.799 39 H 0.195 0.805 40 H 0.230 0.770 41 H 0.189 0.811 42 H 0.083 0.917 43 H 0.078 0.922 44 H 0.044 0.956 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 20.721 -10.657 -15.218 27.830 hybrid contribution -0.194 1.466 0.464 1.550 sum 20.527 -9.191 -14.754 26.898 Atomic orbital electron populations 1.69831 1.05728 1.26598 1.52818 1.25293 0.95241 0.97580 0.99474 0.86978 0.80136 0.84709 0.77008 1.21637 1.23063 1.19493 1.18921 0.84890 0.94806 1.40273 0.89612 1.44399 1.08721 1.33304 1.46505 1.21306 0.97355 0.92049 0.89010 1.22366 0.97432 0.98417 0.99930 1.21090 0.94472 0.93184 0.86506 1.46238 1.15031 1.57827 1.17478 1.17835 0.81731 0.78892 0.86855 1.90812 1.63950 1.57735 1.28330 1.21159 0.97093 1.04975 0.96536 1.21650 0.92650 0.88797 0.98367 1.21558 1.02290 1.04722 0.92286 1.18362 0.90013 0.92077 0.85920 1.43163 1.17059 1.40709 1.08728 1.23017 1.02329 1.06000 0.83880 1.22456 0.91459 1.02671 1.00754 1.70353 1.25660 1.21677 1.01602 1.25429 0.87134 0.97656 0.98426 1.67006 1.09221 1.12294 1.32591 1.22836 0.98938 0.90804 0.86285 1.22392 0.99456 0.97938 0.98393 1.20898 0.92375 0.91393 0.92938 0.92723 0.95420 0.90414 0.92116 0.90988 0.89552 0.76894 0.82135 0.83120 0.79862 0.80484 0.76997 0.81100 0.91686 0.92176 0.95637 0.91474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.15 13.97 55.49 0.78 -26.38 16 2 C 0.02 0.65 5.23 -17.43 -0.09 0.56 16 3 Si 0.88 21.71 24.34 -169.99 -4.14 17.57 16 4 H -0.29 -6.78 6.62 56.52 0.37 -6.41 16 5 H -0.30 -7.64 7.11 56.52 0.40 -7.24 16 6 H -0.27 -6.56 6.63 56.52 0.37 -6.19 16 7 C -0.26 -7.04 10.04 -15.06 -0.15 -7.19 16 8 H 0.09 2.48 8.05 -52.49 -0.42 2.06 16 9 N -0.61 -13.71 2.77 -172.31 -0.48 -14.19 16 10 C 0.13 2.63 4.20 -3.71 -0.02 2.61 16 11 C -0.14 -2.19 5.55 -26.61 -0.15 -2.34 16 12 C 0.15 2.18 2.42 -67.89 -0.16 2.02 16 13 N -0.72 -7.98 5.03 -54.77 -0.28 -8.25 16 14 C 0.56 6.62 7.74 -12.41 -0.10 6.53 16 15 O -0.53 -8.14 16.08 5.30 0.09 -8.05 16 16 C -0.19 -1.72 5.89 -104.81 -0.62 -2.33 16 17 C 0.01 0.09 9.70 -38.91 -0.38 -0.29 16 18 C -0.19 -1.19 9.48 -39.32 -0.37 -1.56 16 19 C 0.36 3.02 7.49 -154.50 -1.16 1.87 16 20 N -0.41 -3.43 2.98 -63.81 -0.19 -3.62 16 21 C -0.02 -0.19 11.16 -16.43 -0.18 -0.37 16 22 C -0.03 -0.24 11.85 -17.82 -0.21 -0.45 16 23 N -0.48 -4.59 11.24 -14.45 -0.16 -4.76 16 24 C 0.20 1.46 11.88 -89.53 -1.06 0.40 16 25 N -0.50 -4.46 9.87 -11.99 -0.12 -4.58 16 26 C 0.17 1.35 10.71 -17.15 -0.18 1.16 16 27 C -0.14 -2.24 5.65 -26.61 -0.15 -2.39 16 28 C 0.15 2.87 6.52 -3.71 -0.02 2.84 16 29 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 30 H 0.03 0.57 7.07 -51.93 -0.37 0.20 16 31 H 0.08 1.74 4.50 -51.93 -0.23 1.51 16 32 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.07 1.11 8.14 -51.94 -0.42 0.68 16 34 H 0.09 1.39 7.58 -51.93 -0.39 1.00 16 35 H 0.40 3.27 6.66 -40.82 -0.27 3.00 16 36 H 0.16 1.10 7.73 -52.48 -0.41 0.69 16 37 H 0.15 0.48 6.75 -52.49 -0.35 0.13 16 38 H 0.18 1.22 8.06 -52.49 -0.42 0.80 16 39 H 0.18 1.01 8.06 -52.48 -0.42 0.59 16 40 H 0.21 0.74 7.05 -52.48 -0.37 0.37 16 41 H 0.17 0.92 6.41 -52.49 -0.34 0.59 16 42 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 43 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 44 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.07 1.28 7.93 -51.92 -0.41 0.87 16 LS Contribution 367.01 15.07 5.53 5.53 Total: -1.00 -34.62 367.01 -9.69 -44.32 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -5.72 Total: 1.33 kcal Atomic # 6 Polarization: 6.08 SS G_CDS: -5.01 Total: 1.07 kcal Atomic # 7 Polarization: -61.32 SS G_CDS: -0.45 Total: -61.77 kcal Atomic # 8 Polarization: -8.14 SS G_CDS: 0.09 Total: -8.05 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.14 Total: 17.57 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -34.62 -9.69 -44.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730553750.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.390 kcal (2) G-P(sol) polarization free energy of solvation -34.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.318 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.61 seconds