Wall clock time and date at job start Sat Apr 11 2020 06:26:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86799 * 120.00216 * 2 1 4 4 H 1.48497 * 109.47395 * 272.95095 * 3 2 1 5 5 H 1.48503 * 109.46870 * 32.94856 * 3 2 1 6 6 H 1.48497 * 109.47202 * 152.94349 * 3 2 1 7 7 C 1.38817 * 119.99982 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99977 * 339.34014 * 7 2 1 9 9 N 1.36939 * 119.99693 * 159.34226 * 7 2 1 10 10 C 1.46924 * 120.63294 * 332.62413 * 9 7 2 11 11 C 1.53193 * 108.77964 * 233.59266 * 10 9 7 12 12 C 1.53039 * 109.30742 * 305.36697 * 11 10 9 13 13 N 1.46503 * 109.45749 * 181.38734 * 12 11 10 14 14 C 1.34781 * 120.00265 * 154.97392 * 13 12 11 15 15 O 1.21578 * 119.99661 * 359.97438 * 14 13 12 16 16 C 1.47658 * 120.00116 * 179.97438 * 14 13 12 17 17 C 1.40238 * 120.49641 * 179.97438 * 16 14 13 18 18 C 1.38021 * 118.35408 * 179.97438 * 17 16 14 19 19 C 1.39152 * 119.25617 * 0.02562 * 18 17 16 20 20 N 1.39493 * 119.52696 * 179.97438 * 19 18 17 21 21 C 1.37234 * 126.50020 * 185.27779 * 20 19 18 22 22 C 1.34582 * 106.82569 * 180.12313 * 21 20 19 23 23 N 1.34178 * 108.23973 * 359.62338 * 22 21 20 24 24 C 1.30456 * 109.38080 * 0.24067 * 23 22 21 25 25 N 1.32433 * 120.94792 * 0.25546 * 19 18 17 26 26 C 1.31640 * 121.79319 * 359.46974 * 25 19 18 27 27 C 1.53036 * 109.53092 * 61.37478 * 12 11 10 28 28 C 1.46926 * 120.63037 * 152.61018 * 9 7 2 29 29 H 0.97001 * 120.00088 * 359.97438 * 1 2 3 30 30 H 1.09006 * 109.58724 * 113.80181 * 10 9 7 31 31 H 1.09002 * 109.70543 * 353.45000 * 10 9 7 32 32 H 1.08994 * 109.49639 * 185.42008 * 11 10 9 33 33 H 1.08988 * 109.52404 * 65.33099 * 11 10 9 34 34 H 1.09005 * 109.46149 * 301.35151 * 12 11 10 35 35 H 0.96999 * 120.00081 * 334.97487 * 13 12 11 36 36 H 1.08004 * 120.81992 * 359.96227 * 17 16 14 37 37 H 1.08002 * 120.36434 * 179.97438 * 18 17 16 38 38 H 1.07997 * 126.58526 * 359.97438 * 21 20 19 39 39 H 1.08007 * 125.88458 * 179.88753 * 22 21 20 40 40 H 1.08004 * 125.72606 * 180.02562 * 24 23 22 41 41 H 1.08000 * 119.67608 * 180.24697 * 26 25 19 42 42 H 1.08995 * 109.49483 * 58.57329 * 27 12 11 43 43 H 1.08999 * 109.50145 * 178.67610 * 27 12 11 44 44 H 1.08996 * 109.58887 * 246.20187 * 28 9 7 45 45 H 1.09008 * 109.58327 * 6.48066 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4353 2.0825 -1.3982 5 1 1.4802 2.6338 0.7615 6 1 3.5775 1.4229 0.6368 7 6 2.0102 -1.2022 -0.0005 8 1 1.5223 -2.1075 0.3290 9 7 3.3136 -1.2401 -0.4189 10 6 3.8172 -0.2584 -1.3892 11 6 4.4620 -1.0077 -2.5595 12 6 5.5287 -1.9642 -2.0216 13 7 6.1705 -2.6585 -3.1408 14 6 7.4212 -3.1424 -3.0056 15 8 8.0169 -3.0023 -1.9550 16 6 8.0678 -3.8426 -4.1333 17 6 9.3689 -4.3497 -4.0042 18 6 9.9305 -4.9970 -5.0862 19 6 9.1941 -5.1239 -6.2601 20 7 9.7563 -5.7765 -7.3572 21 6 9.2042 -5.8942 -8.6080 22 6 10.0756 -6.5980 -9.3539 23 7 11.1366 -6.8979 -8.5892 24 6 10.9582 -6.4120 -7.3917 25 7 7.9692 -4.6290 -6.3524 26 6 7.3937 -4.0092 -5.3437 27 6 4.8748 -2.9899 -1.0930 28 6 4.2350 -2.2630 0.0941 29 1 -0.4850 0.8400 0.0004 30 1 4.5596 0.3805 -0.9108 31 1 2.9921 0.3521 -1.7563 32 1 4.9244 -0.2920 -3.2391 33 1 3.6997 -1.5756 -3.0926 34 1 6.2779 -1.3984 -1.4678 35 1 5.6954 -2.7699 -3.9791 36 1 9.9179 -4.2364 -3.0811 37 1 10.9306 -5.3998 -5.0226 38 1 8.2520 -5.5000 -8.9310 39 1 9.9456 -6.8706 -10.3909 40 1 11.6492 -6.4994 -6.5663 41 1 6.3916 -3.6223 -5.4553 42 1 4.1083 -3.5390 -1.6397 43 1 5.6311 -3.6852 -0.7288 44 1 5.0115 -1.7878 0.6935 45 1 3.6845 -2.9758 0.7081 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000730553750.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:26:31 Heat of formation + Delta-G solvation = 82.174021 kcal Electronic energy + Delta-G solvation = -28288.118391 eV Core-core repulsion = 24307.062131 eV Total energy + Delta-G solvation = -3981.056260 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 6.83 seconds Orbital eigenvalues (eV) -43.44029 -41.73816 -40.49415 -39.09126 -36.16842 -35.42808 -34.12160 -33.86826 -32.30611 -31.96828 -31.04321 -30.30933 -27.07653 -25.83495 -25.07773 -24.51291 -23.57983 -22.64741 -22.01626 -21.52193 -21.23184 -19.96998 -19.23211 -18.47807 -17.98601 -17.29901 -16.91168 -16.57893 -16.39224 -16.12023 -15.93632 -15.78413 -15.34254 -15.00502 -14.96072 -14.87765 -14.77276 -14.59377 -14.46510 -14.26526 -14.18375 -13.93565 -13.69986 -13.46260 -12.59130 -12.56016 -12.28129 -12.03345 -11.91108 -11.79555 -11.57434 -11.48018 -11.29613 -11.27701 -11.20835 -10.84696 -10.68025 -10.18546 -9.92654 -9.57051 -8.96066 -8.15579 -5.47903 -0.85530 -0.04277 0.92952 1.29875 1.29955 1.43826 1.51978 1.78897 1.98678 2.03937 2.41959 2.64215 2.99226 3.06585 3.32175 3.37309 3.51083 3.60912 3.66997 3.75044 3.84576 3.97137 4.04300 4.21979 4.32377 4.36784 4.40924 4.48802 4.51345 4.63486 4.66897 4.72936 4.81504 4.89031 4.94293 5.01536 5.04789 5.07854 5.13842 5.17814 5.38847 5.45520 5.60624 5.87432 5.99007 6.13417 6.43875 6.49771 6.87833 6.91575 7.10216 7.62181 8.02121 9.04130 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.029160 B = 0.001947 C = 0.001897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.980154 B =14376.255652 C =14753.925736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.035 4.035 3 Si 0.945 3.055 4 H -0.268 1.268 5 H -0.313 1.313 6 H -0.264 1.264 7 C -0.248 4.248 8 H 0.052 0.948 9 N -0.619 5.619 10 C 0.120 3.880 11 C -0.129 4.129 12 C 0.161 3.839 13 N -0.705 5.705 14 C 0.566 3.434 15 O -0.569 6.569 16 C -0.202 4.202 17 C 0.011 3.989 18 C -0.174 4.174 19 C 0.354 3.646 20 N -0.420 5.420 21 C -0.036 4.036 22 C -0.039 4.039 23 N -0.512 5.512 24 C 0.200 3.800 25 N -0.517 5.517 26 C 0.176 3.824 27 C -0.129 4.129 28 C 0.146 3.854 29 H 0.261 0.739 30 H 0.033 0.967 31 H 0.058 0.942 32 H 0.092 0.908 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.413 0.587 36 H 0.168 0.832 37 H 0.185 0.815 38 H 0.192 0.808 39 H 0.194 0.806 40 H 0.249 0.751 41 H 0.193 0.807 42 H 0.064 0.936 43 H 0.068 0.932 44 H 0.030 0.970 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.962 -10.467 -16.498 30.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.229 4.229 3 Si 0.774 3.226 4 H -0.195 1.195 5 H -0.243 1.243 6 H -0.189 1.189 7 C -0.377 4.377 8 H 0.070 0.930 9 N -0.343 5.343 10 C -0.005 4.005 11 C -0.169 4.169 12 C 0.056 3.944 13 N -0.356 5.356 14 C 0.353 3.647 15 O -0.449 6.449 16 C -0.208 4.208 17 C -0.015 4.015 18 C -0.196 4.196 19 C 0.127 3.873 20 N -0.103 5.103 21 C -0.165 4.165 22 C -0.183 4.183 23 N -0.229 5.229 24 C -0.081 4.081 25 N -0.229 5.229 26 C 0.016 3.984 27 C -0.169 4.169 28 C 0.020 3.980 29 H 0.070 0.930 30 H 0.050 0.950 31 H 0.076 0.924 32 H 0.110 0.890 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.251 0.749 36 H 0.185 0.815 37 H 0.202 0.798 38 H 0.209 0.791 39 H 0.210 0.790 40 H 0.265 0.735 41 H 0.209 0.791 42 H 0.082 0.918 43 H 0.086 0.914 44 H 0.048 0.952 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 23.441 -10.810 -16.799 30.798 hybrid contribution -0.967 1.371 0.932 1.919 sum 22.473 -9.439 -15.867 29.084 Atomic orbital electron populations 1.69960 1.07397 1.27205 1.55630 1.25899 0.95820 1.00876 1.00341 0.85949 0.78586 0.80286 0.77826 1.19473 1.24250 1.18887 1.18849 0.86640 0.93540 1.38691 0.92999 1.44506 1.07727 1.34513 1.47597 1.21378 0.96929 0.92065 0.90161 1.22176 0.97608 0.98847 0.98232 1.20728 0.93866 0.92635 0.87123 1.45944 1.15033 1.57343 1.17265 1.18148 0.81369 0.78178 0.86980 1.90799 1.64817 1.59252 1.30018 1.20944 0.97849 1.06057 0.95944 1.21814 0.92238 0.88458 0.99006 1.21832 1.03376 1.03539 0.90837 1.18646 0.90177 0.92057 0.86450 1.43288 1.17360 1.40871 1.08755 1.23232 1.02807 1.06338 0.84126 1.22809 0.91271 1.02575 1.01602 1.70359 1.26597 1.23128 1.02817 1.26175 0.87076 0.96102 0.98758 1.67025 1.09887 1.12949 1.33034 1.23098 0.99590 0.90170 0.85547 1.22209 0.99384 0.97965 0.97328 1.21021 0.91823 0.90690 0.94424 0.92961 0.94960 0.92433 0.88998 0.90680 0.90694 0.74940 0.81485 0.79778 0.79099 0.78955 0.73498 0.79067 0.91752 0.91383 0.95160 0.92403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.92 13.97 21.65 0.30 -58.62 16 2 C -0.03 -1.97 5.23 84.86 0.44 -1.53 16 3 Si 0.94 45.21 24.34 68.60 1.67 46.88 16 4 H -0.27 -11.84 6.62 99.48 0.66 -11.18 16 5 H -0.31 -15.44 7.11 99.48 0.71 -14.74 16 6 H -0.26 -12.23 6.63 99.48 0.66 -11.57 16 7 C -0.25 -13.66 10.04 84.03 0.84 -12.81 16 8 H 0.05 3.15 8.05 -2.92 -0.02 3.12 16 9 N -0.62 -27.79 2.77 -699.08 -1.94 -29.72 16 10 C 0.12 4.68 4.20 86.36 0.36 5.04 16 11 C -0.13 -3.62 5.55 30.67 0.17 -3.45 16 12 C 0.16 4.27 2.42 45.02 0.11 4.38 16 13 N -0.70 -13.68 5.03 -445.44 -2.24 -15.92 16 14 C 0.57 12.00 7.74 86.73 0.67 12.67 16 15 O -0.57 -16.41 16.08 -3.96 -0.06 -16.48 16 16 C -0.20 -3.10 5.89 -19.99 -0.12 -3.21 16 17 C 0.01 0.14 9.70 22.70 0.22 0.36 16 18 C -0.17 -1.64 9.48 22.44 0.21 -1.43 16 19 C 0.35 4.95 7.49 132.89 1.00 5.95 16 20 N -0.42 -6.03 2.98 -355.78 -1.06 -7.09 16 21 C -0.04 -0.54 11.16 83.01 0.93 0.38 16 22 C -0.04 -0.61 11.85 83.50 0.99 0.38 16 23 N -0.51 -9.09 11.24 -199.64 -2.24 -11.33 16 24 C 0.20 2.51 11.88 179.97 2.14 4.64 16 25 N -0.52 -8.01 9.87 -191.85 -1.89 -9.90 16 26 C 0.18 2.29 10.71 85.04 0.91 3.20 16 27 C -0.13 -3.86 5.65 30.67 0.17 -3.69 16 28 C 0.15 5.48 6.52 86.36 0.56 6.04 16 29 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 30 H 0.03 1.24 7.07 -2.38 -0.02 1.22 16 31 H 0.06 2.48 4.50 -2.39 -0.01 2.47 16 32 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 33 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 34 H 0.07 2.24 7.58 -2.38 -0.02 2.22 16 35 H 0.41 5.38 6.66 -92.71 -0.62 4.76 16 36 H 0.17 1.85 7.73 -2.91 -0.02 1.83 16 37 H 0.18 0.36 6.75 -2.91 -0.02 0.34 16 38 H 0.19 2.34 8.06 -2.91 -0.02 2.31 16 39 H 0.19 2.02 8.06 -2.91 -0.02 2.00 16 40 H 0.25 0.79 7.05 -2.91 -0.02 0.77 16 41 H 0.19 1.46 6.41 -2.91 -0.02 1.44 16 42 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 43 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 44 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 45 H 0.06 2.23 7.93 -2.38 -0.02 2.21 16 Total: -1.00 -76.88 367.01 2.47 -74.41 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: 0.32 Total: 10.85 kcal Atomic # 6 Polarization: 7.31 SS G_CDS: 9.61 Total: 16.92 kcal Atomic # 7 Polarization: -123.51 SS G_CDS: -9.07 Total: -132.59 kcal Atomic # 8 Polarization: -16.41 SS G_CDS: -0.06 Total: -16.48 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 1.67 Total: 46.88 kcal Total: -76.88 2.47 -74.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730553750.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.582 kcal (2) G-P(sol) polarization free energy of solvation -76.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.408 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.83 seconds