Wall clock time and date at job start Sat Apr 11 2020 06:26:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86809 * 119.99701 * 2 1 4 4 H 1.48504 * 109.46931 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46750 * 299.99495 * 3 2 1 6 6 H 1.48498 * 109.47076 * 59.99575 * 3 2 1 7 7 C 1.38804 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99994 * 162.55095 * 7 2 1 9 9 N 1.36933 * 120.00274 * 342.82344 * 7 2 1 10 10 C 1.46963 * 120.59560 * 151.29561 * 9 7 2 11 11 C 1.53811 * 108.39782 * 124.76136 * 10 9 7 12 12 N 1.46965 * 108.58248 * 49.63604 * 11 10 9 13 13 C 1.34779 * 120.59500 * 124.62133 * 12 11 10 14 14 O 1.21275 * 119.99814 * 180.02562 * 13 12 11 15 15 C 1.50696 * 119.99660 * 0.02806 * 13 12 11 16 16 C 1.50712 * 109.47070 * 179.97438 * 15 13 12 17 17 C 1.39730 * 127.05439 * 124.70330 * 16 15 13 18 18 N 1.31428 * 105.88231 * 179.90346 * 17 16 15 19 19 N 1.28595 * 108.72262 * 0.36981 * 18 17 16 20 20 C 1.40206 * 124.61232 * 179.75780 * 19 18 17 21 21 C 1.38830 * 120.06934 * 179.72866 * 20 19 18 22 22 C 1.38125 * 119.93314 * 179.72298 * 21 20 19 23 23 C 1.38278 * 120.06419 * 0.54980 * 22 21 20 24 24 C 1.38286 * 120.13592 * 359.72357 * 23 22 21 25 25 C 1.38120 * 120.06558 * 0.02562 * 24 23 22 26 26 N 1.28602 * 110.77938 * 359.75858 * 19 18 17 27 27 C 1.46959 * 118.80874 * 304.64996 * 12 11 10 28 28 C 1.46965 * 120.59269 * 331.57485 * 9 7 2 29 29 H 0.97004 * 120.00510 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.61152 * 244.53986 * 10 9 7 31 31 H 1.08995 * 109.61009 * 5.05482 * 10 9 7 32 32 H 1.08993 * 109.74227 * 289.84390 * 11 10 9 33 33 H 1.09000 * 109.67222 * 169.38489 * 11 10 9 34 34 H 1.09001 * 109.47755 * 299.99323 * 15 13 12 35 35 H 1.08997 * 109.47578 * 59.99996 * 15 13 12 36 36 H 1.08002 * 127.06107 * 0.02562 * 17 16 15 37 37 H 1.07996 * 120.03442 * 359.97421 * 21 20 19 38 38 H 1.07998 * 119.96977 * 180.30310 * 22 21 20 39 39 H 1.08000 * 119.93124 * 179.70636 * 23 22 21 40 40 H 1.07993 * 119.96600 * 180.02562 * 24 23 22 41 41 H 1.07994 * 120.03629 * 180.02562 * 25 24 23 42 42 H 1.09005 * 109.61247 * 295.47597 * 27 12 11 43 43 H 1.09011 * 109.60878 * 174.97188 * 27 12 11 44 44 H 1.08999 * 109.61248 * 354.94868 * 28 9 7 45 45 H 1.09006 * 109.61199 * 115.45384 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8913 2.3964 -1.2126 6 1 1.8912 2.3966 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0530 -1.2236 -0.2799 9 7 1.3715 -2.3614 0.3513 10 6 1.8067 -3.6518 -0.2012 11 6 2.1104 -4.6031 0.9687 12 7 0.9734 -4.5785 1.8996 13 6 0.3440 -5.7194 2.2440 14 8 -0.5934 -5.6865 3.0128 15 6 0.8052 -7.0359 1.6739 16 6 -0.0578 -8.1472 2.2140 17 6 -0.7810 -9.0868 1.4746 18 7 -1.3785 -9.8561 2.3570 19 7 -1.0746 -9.4442 3.5367 20 6 -1.5366 -10.0246 4.7264 21 6 -1.1431 -9.5053 5.9523 22 6 -1.6045 -10.0757 7.1226 23 6 -2.4485 -11.1699 7.0741 24 6 -2.8377 -11.6930 5.8546 25 6 -2.3838 -11.1237 4.6809 26 7 -0.2893 -8.4276 3.4768 27 6 0.5347 -3.2874 2.4476 28 6 0.2345 -2.3368 1.2822 29 1 -0.4851 0.8400 -0.0004 30 1 1.0135 -4.0709 -0.8205 31 1 2.7054 -3.5085 -0.8010 32 1 3.0128 -4.2757 1.4847 33 1 2.2520 -5.6157 0.5909 34 1 0.7256 -7.0092 0.5871 35 1 1.8428 -7.2115 1.9580 36 1 -0.8360 -9.1660 0.3989 37 1 -0.4801 -8.6537 5.9908 38 1 -1.3026 -9.6691 8.0765 39 1 -2.8042 -11.6172 7.9905 40 1 -3.4973 -12.5474 5.8199 41 1 -2.6884 -11.5324 3.7288 42 1 1.3249 -2.8662 3.0691 43 1 -0.3663 -3.4305 3.0444 44 1 0.0947 -1.3248 1.6622 45 1 -0.6681 -2.6642 0.7661 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000744557411.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:26:42 Heat of formation + Delta-G solvation = 124.106748 kcal Electronic energy + Delta-G solvation = -28644.618448 eV Core-core repulsion = 24665.380527 eV Total energy + Delta-G solvation = -3979.237921 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 2.93 seconds Orbital eigenvalues (eV) -44.85206 -41.00040 -40.16261 -38.42321 -35.61683 -35.36615 -33.95627 -33.07387 -32.55684 -31.95880 -31.41608 -29.46425 -28.37188 -25.54258 -25.04745 -24.58409 -23.95019 -22.65389 -22.34535 -21.65729 -20.00816 -19.48097 -18.73798 -18.01719 -17.53587 -17.23771 -16.91856 -16.66525 -16.41850 -16.28202 -15.75764 -15.46414 -15.33169 -15.11948 -14.98345 -14.79146 -14.51838 -14.46869 -14.18425 -13.91503 -13.40041 -13.32719 -13.11232 -12.73929 -12.67427 -12.45487 -12.35630 -12.29155 -12.23261 -11.98241 -11.83933 -11.78336 -11.63738 -11.46672 -11.25405 -10.73847 -10.60617 -10.10181 -9.78382 -9.36143 -8.63805 -7.87229 -5.35686 -0.31391 0.25399 1.09142 1.23124 1.30438 1.47253 1.50267 1.59997 1.69568 2.13529 2.52079 2.69824 2.96072 3.27798 3.55887 3.64322 3.66096 3.82585 3.89943 4.09106 4.15627 4.28963 4.31739 4.33698 4.38164 4.42475 4.45649 4.53068 4.59814 4.65064 4.70659 4.83449 4.92710 4.96043 5.00375 5.07358 5.10926 5.29711 5.30917 5.31745 5.43115 5.47710 5.63136 5.63691 5.70635 5.96892 6.37001 6.56529 7.10786 7.22123 7.24106 7.81570 8.34412 9.17957 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.026863 B = 0.002081 C = 0.002002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.081598 B =13454.156200 C =13984.321185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.055 4.055 3 Si 0.967 3.033 4 H -0.261 1.261 5 H -0.295 1.295 6 H -0.295 1.295 7 C -0.257 4.257 8 H 0.078 0.922 9 N -0.610 5.610 10 C 0.123 3.877 11 C 0.096 3.904 12 N -0.602 5.602 13 C 0.507 3.493 14 O -0.589 6.589 15 C -0.041 4.041 16 C 0.013 3.987 17 C -0.002 4.002 18 N -0.312 5.312 19 N -0.119 5.119 20 C 0.110 3.890 21 C -0.125 4.125 22 C -0.101 4.101 23 C -0.107 4.107 24 C -0.097 4.097 25 C -0.117 4.117 26 N -0.291 5.291 27 C 0.105 3.895 28 C 0.172 3.828 29 H 0.249 0.751 30 H 0.022 0.978 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.129 0.871 34 H 0.158 0.842 35 H 0.142 0.858 36 H 0.244 0.756 37 H 0.122 0.878 38 H 0.159 0.841 39 H 0.168 0.832 40 H 0.168 0.832 41 H 0.139 0.861 42 H 0.063 0.937 43 H 0.066 0.934 44 H 0.065 0.935 45 H -0.009 1.009 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.746 -25.822 8.832 27.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.250 4.250 3 Si 0.796 3.204 4 H -0.185 1.185 5 H -0.222 1.222 6 H -0.222 1.222 7 C -0.387 4.387 8 H 0.096 0.904 9 N -0.333 5.333 10 C -0.003 4.003 11 C -0.027 4.027 12 N -0.334 5.334 13 C 0.296 3.704 14 O -0.469 6.469 15 C -0.082 4.082 16 C -0.151 4.151 17 C -0.185 4.185 18 N -0.149 5.149 19 N -0.011 5.011 20 C 0.021 3.979 21 C -0.146 4.146 22 C -0.120 4.120 23 C -0.125 4.125 24 C -0.115 4.115 25 C -0.138 4.138 26 N -0.130 5.130 27 C -0.020 4.020 28 C 0.045 3.955 29 H 0.058 0.942 30 H 0.040 0.960 31 H 0.101 0.899 32 H 0.093 0.907 33 H 0.147 0.853 34 H 0.176 0.824 35 H 0.160 0.840 36 H 0.260 0.740 37 H 0.140 0.860 38 H 0.176 0.824 39 H 0.186 0.814 40 H 0.186 0.814 41 H 0.157 0.843 42 H 0.081 0.919 43 H 0.084 0.916 44 H 0.084 0.916 45 H 0.009 0.991 Dipole moment (debyes) X Y Z Total from point charges -0.241 -26.235 10.325 28.194 hybrid contribution 0.232 2.153 -1.059 2.411 sum -0.009 -24.082 9.266 25.803 Atomic orbital electron populations 1.70188 1.06905 1.25824 1.55552 1.25864 0.95946 1.01807 1.01363 0.85210 0.78911 0.79851 0.76472 1.18499 1.22232 1.22168 1.19612 0.93217 0.85617 1.40252 0.90446 1.44280 1.36193 1.03091 1.49767 1.21638 0.98758 0.85771 0.94127 1.22578 0.87417 1.02353 0.90374 1.48116 1.33427 1.05875 1.45968 1.21090 0.82103 0.86266 0.80903 1.90681 1.30741 1.87392 1.38129 1.20141 0.99898 0.84440 1.03687 1.23035 1.03115 1.00523 0.88463 1.25466 0.97112 0.93423 1.02530 1.73963 1.23574 1.26238 0.91146 1.45007 1.31900 1.19247 1.04922 1.17937 1.01364 0.97317 0.81295 1.21075 1.01505 1.01049 0.90962 1.21423 0.96864 0.96118 0.97555 1.21790 0.96020 0.95197 0.99521 1.21482 0.99134 1.00354 0.90559 1.21128 0.96921 0.94220 1.01555 1.74058 1.10806 1.03976 1.24199 1.22015 0.99457 0.83833 0.96691 1.20836 0.88269 0.97533 0.88888 0.94195 0.96028 0.89927 0.90722 0.85293 0.82423 0.84021 0.73963 0.86002 0.82358 0.81447 0.81447 0.84285 0.91909 0.91559 0.91631 0.99078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.41 11.20 21.65 0.24 -55.17 16 2 C -0.05 -2.99 4.91 84.86 0.42 -2.57 16 3 Si 0.97 43.91 29.59 68.60 2.03 45.94 16 4 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 5 H -0.30 -13.53 7.11 99.48 0.71 -12.82 16 6 H -0.29 -13.55 7.11 99.48 0.71 -12.85 16 7 C -0.26 -13.40 9.57 84.03 0.80 -12.59 16 8 H 0.08 3.83 7.89 -2.91 -0.02 3.80 16 9 N -0.61 -29.06 2.96 -697.36 -2.06 -31.12 16 10 C 0.12 4.35 6.70 86.56 0.58 4.93 16 11 C 0.10 2.55 6.52 86.56 0.56 3.12 16 12 N -0.60 -20.34 2.95 -817.17 -2.41 -22.75 16 13 C 0.51 16.83 7.69 87.66 0.67 17.51 16 14 O -0.59 -25.46 15.01 -3.02 -0.05 -25.51 16 15 C -0.04 -0.86 4.64 29.10 0.13 -0.73 16 16 C 0.01 0.35 6.12 42.99 0.26 0.61 16 17 C 0.00 -0.05 12.16 85.11 1.03 0.98 16 18 N -0.31 -8.72 11.21 -56.80 -0.64 -9.36 16 19 N -0.12 -3.65 4.13 -51.14 -0.21 -3.86 16 20 C 0.11 2.90 6.72 38.09 0.26 3.16 16 21 C -0.13 -2.96 9.59 22.38 0.21 -2.74 16 22 C -0.10 -1.56 10.04 22.25 0.22 -1.34 16 23 C -0.11 -1.20 10.04 22.29 0.22 -0.98 16 24 C -0.10 -1.24 10.04 22.25 0.22 -1.02 16 25 C -0.12 -2.35 9.59 22.39 0.21 -2.14 16 26 N -0.29 -9.54 10.63 -47.19 -0.50 -10.04 16 27 C 0.10 4.31 6.59 86.41 0.57 4.88 16 28 C 0.17 8.43 5.51 86.41 0.48 8.91 16 29 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 30 H 0.02 0.79 8.14 -2.38 -0.02 0.77 16 31 H 0.08 2.66 7.93 -2.39 -0.02 2.64 16 32 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.13 2.04 5.91 -2.39 -0.01 2.02 16 34 H 0.16 2.07 7.72 -2.39 -0.02 2.05 16 35 H 0.14 2.16 7.91 -2.39 -0.02 2.14 16 36 H 0.24 3.09 8.06 -2.91 -0.02 3.07 16 37 H 0.12 3.28 7.63 -2.91 -0.02 3.25 16 38 H 0.16 1.59 8.06 -2.91 -0.02 1.57 16 39 H 0.17 0.66 8.06 -2.91 -0.02 0.63 16 40 H 0.17 0.98 8.06 -2.91 -0.02 0.96 16 41 H 0.14 2.70 7.63 -2.91 -0.02 2.68 16 42 H 0.06 2.52 8.14 -2.38 -0.02 2.50 16 43 H 0.07 2.88 6.99 -2.38 -0.02 2.86 16 44 H 0.07 3.64 6.00 -2.39 -0.01 3.63 16 45 H -0.01 -0.48 8.14 -2.38 -0.02 -0.50 16 Total: -1.00 -82.61 374.14 4.29 -78.32 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: 1.01 Total: 13.57 kcal Atomic # 6 Polarization: 13.11 SS G_CDS: 6.87 Total: 19.98 kcal Atomic # 7 Polarization: -126.72 SS G_CDS: -5.58 Total: -132.30 kcal Atomic # 8 Polarization: -25.46 SS G_CDS: -0.05 Total: -25.51 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Total: -82.61 4.29 -78.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744557411.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 202.427 kcal (2) G-P(sol) polarization free energy of solvation -82.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.321 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.93 seconds