Wall clock time and date at job start Sat Apr 11 2020 06:27:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31298 * 1 3 3 Si 1.86804 * 119.99799 * 2 1 4 4 H 1.48494 * 109.46721 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47040 * 59.99601 * 3 2 1 6 6 H 1.48493 * 109.46939 * 299.99672 * 3 2 1 7 7 C 1.38985 * 119.99728 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99481 * 203.41031 * 7 2 1 9 9 N 1.37322 * 120.00426 * 23.41694 * 7 2 1 10 10 C 1.36486 * 126.06854 * 187.81918 * 9 7 2 11 11 C 1.35683 * 107.50442 * 179.97438 * 10 9 7 12 12 N 1.40602 * 126.07973 * 180.02562 * 11 10 9 13 13 C 1.34775 * 120.00116 * 180.02562 * 12 11 10 14 14 O 1.21304 * 119.99655 * 359.97438 * 13 12 11 15 15 C 1.50695 * 120.00028 * 180.02562 * 13 12 11 16 16 H 1.08999 * 109.88124 * 0.17713 * 15 13 12 17 17 C 1.54323 * 109.88810 * 238.97678 * 15 13 12 18 18 C 1.55142 * 103.01999 * 218.31465 * 17 15 13 19 19 C 1.54903 * 101.65634 * 35.64951 * 18 17 15 20 20 N 1.47444 * 109.88917 * 121.20760 * 15 13 12 21 21 C 1.46905 * 110.99877 * 356.15057 * 20 15 13 22 22 C 1.50699 * 109.46904 * 177.82012 * 21 20 15 23 23 C 1.38227 * 119.61997 * 94.72530 * 22 21 20 24 24 C 1.38627 * 119.16378 * 179.75073 * 23 22 21 25 25 C 1.38674 * 118.41932 * 0.51583 * 24 23 22 26 26 C 1.38183 * 119.16394 * 359.72343 * 25 24 23 27 27 N 1.31858 * 119.61920 * 274.99607 * 22 21 20 28 28 C 1.40646 * 107.83824 * 0.02562 * 11 10 9 29 29 N 1.30907 * 108.38663 * 359.71123 * 28 11 10 30 30 H 0.97000 * 119.99969 * 185.68160 * 1 2 3 31 31 H 1.07994 * 126.24896 * 0.02562 * 10 9 7 32 32 H 0.97006 * 119.99721 * 0.02562 * 12 11 10 33 33 H 1.09003 * 110.70378 * 336.69346 * 17 15 13 34 34 H 1.08996 * 110.70344 * 99.92656 * 17 15 13 35 35 H 1.09004 * 110.98390 * 277.56025 * 18 17 15 36 36 H 1.09000 * 111.02330 * 153.76416 * 18 17 15 37 37 H 1.08991 * 110.37628 * 204.10461 * 19 18 17 38 38 H 1.09000 * 110.36836 * 81.76022 * 19 18 17 39 39 H 1.08993 * 109.46774 * 297.81842 * 21 20 15 40 40 H 1.09001 * 109.47222 * 57.82021 * 21 20 15 41 41 H 1.08005 * 120.41740 * 359.97438 * 23 22 21 42 42 H 1.07994 * 120.79255 * 180.26121 * 24 23 22 43 43 H 1.08001 * 120.42140 * 179.70979 * 25 24 23 44 44 H 1.07993 * 119.61770 * 180.02562 * 26 25 24 45 45 H 1.08004 * 125.80591 * 180.02562 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2469 1.6178 0.0000 4 1 3.7069 1.3464 0.0006 5 1 1.8881 2.3965 1.2125 6 1 1.8882 2.3964 -1.2125 7 6 2.0078 -1.2037 0.0005 8 1 3.0212 -1.2420 0.3722 9 7 1.4061 -2.3442 -0.4716 10 6 1.9099 -3.6102 -0.3926 11 6 1.0109 -4.4441 -0.9734 12 7 1.1393 -5.8381 -1.1050 13 6 0.1665 -6.5506 -1.7071 14 8 -0.8201 -5.9892 -2.1350 15 6 0.3038 -8.0446 -1.8477 16 1 1.2444 -8.3736 -1.4059 17 6 0.2542 -8.4384 -3.3390 18 6 -0.5594 -9.7593 -3.3248 19 6 -1.5811 -9.4855 -2.1932 20 7 -0.8260 -8.7172 -1.1804 21 6 -1.6932 -7.7434 -0.5040 22 6 -2.8628 -8.4605 0.1196 23 6 -2.8012 -8.8429 1.4464 24 6 -3.8846 -9.4974 2.0118 25 6 -4.9903 -9.7535 1.2150 26 6 -4.9779 -9.3455 -0.1052 27 7 -3.9311 -8.7205 -0.6083 28 6 -0.0723 -3.6662 -1.4203 29 7 0.1637 -2.4154 -1.1144 30 1 -0.4850 -0.8359 0.0832 31 1 2.8517 -3.8961 0.0518 32 1 1.9280 -6.2870 -0.7625 33 1 -0.2607 -7.6749 -3.9222 34 1 1.2587 -8.6085 -3.7263 35 1 0.0785 -10.6080 -3.0780 36 1 -1.0648 -9.9175 -4.2775 37 1 -1.9382 -10.4238 -1.7690 38 1 -2.4168 -8.8964 -2.5709 39 1 -1.1262 -7.2297 0.2723 40 1 -2.0577 -7.0160 -1.2294 41 1 -1.9215 -8.6314 2.0362 42 1 -3.8664 -9.8042 3.0471 43 1 -5.8502 -10.2654 1.6210 44 1 -5.8351 -9.5408 -0.7322 45 1 -0.9517 -4.0382 -1.9250 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000746182534.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:27:01 Heat of formation + Delta-G solvation = 99.490308 kcal Electronic energy + Delta-G solvation = -29312.279711 eV Core-core repulsion = 25331.974341 eV Total energy + Delta-G solvation = -3980.305370 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.91028 -40.09101 -39.45731 -37.38534 -34.43002 -33.50986 -33.23375 -32.45456 -30.57381 -30.29350 -29.60464 -27.55851 -26.06894 -24.71976 -23.60087 -22.72706 -22.15000 -21.07702 -20.97313 -19.75844 -19.50300 -18.13205 -17.17860 -16.67874 -16.47420 -16.18976 -15.71920 -15.62169 -15.06391 -14.66257 -14.60159 -14.07742 -13.94216 -13.79135 -13.58374 -13.45289 -13.41958 -13.15709 -12.94008 -12.34556 -12.31073 -11.91802 -11.84016 -11.54666 -11.48266 -11.32804 -11.20569 -11.08993 -10.84172 -10.41309 -10.37107 -10.08529 -9.96678 -9.60609 -9.44842 -9.38251 -9.15404 -9.10958 -8.27249 -8.20081 -7.05579 -6.86581 -4.30413 0.99638 1.18510 2.63249 3.09430 3.16487 3.33372 3.47382 3.53115 3.60442 3.95204 4.04005 4.17080 4.33005 4.44833 4.53117 4.64634 4.70160 4.73155 4.91513 4.95740 4.99003 5.05220 5.15965 5.26521 5.37132 5.46698 5.54133 5.62268 5.71065 5.78202 5.84485 5.92496 5.99022 6.07098 6.11810 6.15391 6.18892 6.27236 6.59929 6.74253 6.79889 6.86314 6.87712 7.01353 7.50674 7.79672 7.93448 8.06913 8.27314 8.49734 8.69965 9.22272 9.39431 10.29349 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014509 B = 0.002704 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1929.354132 B =10353.948717 C =11620.070631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.024 3.976 3 Si 1.088 2.912 4 H -0.278 1.278 5 H -0.279 1.279 6 H -0.275 1.275 7 C -0.400 4.400 8 H 0.112 0.888 9 N -0.137 5.137 10 C -0.084 4.084 11 C -0.060 4.060 12 N -0.618 5.618 13 C 0.485 3.515 14 O -0.532 6.532 15 C 0.060 3.940 16 H 0.100 0.900 17 C -0.127 4.127 18 C -0.127 4.127 19 C 0.043 3.957 20 N -0.498 5.498 21 C 0.067 3.933 22 C 0.143 3.857 23 C -0.155 4.155 24 C -0.077 4.077 25 C -0.180 4.180 26 C 0.098 3.902 27 N -0.476 5.476 28 C -0.012 4.012 29 N -0.338 5.338 30 H 0.310 0.690 31 H 0.147 0.853 32 H 0.399 0.601 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.068 0.932 39 H 0.087 0.913 40 H 0.105 0.895 41 H 0.134 0.866 42 H 0.132 0.868 43 H 0.131 0.869 44 H 0.153 0.847 45 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.006 -20.750 0.936 20.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.197 4.197 3 Si 0.912 3.088 4 H -0.203 1.203 5 H -0.204 1.204 6 H -0.200 1.200 7 C -0.532 4.532 8 H 0.130 0.870 9 N 0.098 4.902 10 C -0.236 4.236 11 C -0.165 4.165 12 N -0.260 5.260 13 C 0.270 3.730 14 O -0.410 6.410 15 C -0.052 4.052 16 H 0.118 0.882 17 C -0.166 4.166 18 C -0.165 4.165 19 C -0.085 4.085 20 N -0.223 5.223 21 C -0.061 4.061 22 C 0.006 3.994 23 C -0.175 4.175 24 C -0.104 4.104 25 C -0.201 4.201 26 C -0.060 4.060 27 N -0.186 5.186 28 C -0.185 4.185 29 N -0.172 5.172 30 H 0.126 0.874 31 H 0.165 0.835 32 H 0.232 0.768 33 H 0.100 0.900 34 H 0.098 0.902 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.086 0.914 39 H 0.105 0.895 40 H 0.122 0.878 41 H 0.152 0.848 42 H 0.150 0.850 43 H 0.149 0.851 44 H 0.171 0.829 45 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -3.229 -17.600 0.035 17.894 hybrid contribution 0.689 -2.641 0.863 2.862 sum -2.541 -20.241 0.897 20.419 Atomic orbital electron populations 1.70289 1.07553 1.35461 1.28812 1.26768 0.96187 1.02724 0.93998 0.83258 0.74597 0.72993 0.77988 1.20347 1.20429 1.20040 1.20906 1.00653 0.85557 1.46112 0.87034 1.44657 1.10986 1.04333 1.30269 1.21253 1.02100 0.85214 1.14989 1.17192 1.00002 0.82253 1.17055 1.42653 1.21231 1.05622 1.56462 1.20780 0.83551 0.89144 0.79477 1.90528 1.29929 1.71322 1.49178 1.22512 0.97056 0.89724 0.95871 0.88202 1.22738 1.01548 0.98137 0.94140 1.22700 0.97698 0.97248 0.98842 1.23100 0.96179 0.98189 0.90992 1.64203 1.08841 1.22314 1.26983 1.21872 0.90580 0.93867 0.99746 1.21150 0.93327 0.94204 0.90756 1.22007 0.99637 0.99511 0.96390 1.21577 0.92903 0.95828 1.00044 1.22103 0.99583 1.02597 0.95778 1.22735 0.96099 0.93805 0.93342 1.67533 1.00215 1.11992 1.38850 1.23794 0.99832 0.89740 1.05138 1.77488 0.99563 1.18993 1.21173 0.87445 0.83514 0.76768 0.89981 0.90236 0.90788 0.90586 0.90820 0.91393 0.89521 0.87764 0.84796 0.84997 0.85070 0.82950 0.80515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -22.93 13.24 55.49 0.73 -22.19 16 2 C 0.02 0.64 5.37 -17.50 -0.09 0.54 16 3 Si 1.09 22.10 29.98 -169.99 -5.10 17.01 16 4 H -0.28 -5.20 7.11 56.52 0.40 -4.79 16 5 H -0.28 -5.45 7.11 56.52 0.40 -5.05 16 6 H -0.28 -5.60 7.11 56.52 0.40 -5.19 16 7 C -0.40 -10.66 10.10 -14.81 -0.15 -10.81 16 8 H 0.11 2.72 7.93 -52.48 -0.42 2.30 16 9 N -0.14 -3.72 3.65 -11.41 -0.04 -3.77 16 10 C -0.08 -1.96 11.49 -16.39 -0.19 -2.15 16 11 C -0.06 -1.33 6.90 -83.84 -0.58 -1.91 16 12 N -0.62 -10.53 5.47 -10.00 -0.05 -10.59 16 13 C 0.48 8.05 5.06 -10.99 -0.06 7.99 16 14 O -0.53 -10.75 10.95 5.54 0.06 -10.69 16 15 C 0.06 0.75 3.84 -67.88 -0.26 0.49 16 16 H 0.10 1.03 7.94 -51.93 -0.41 0.62 16 17 C -0.13 -1.43 6.44 -24.91 -0.16 -1.59 16 18 C -0.13 -1.26 7.08 -24.59 -0.17 -1.43 16 19 C 0.04 0.52 5.45 -2.30 -0.01 0.51 16 20 N -0.50 -6.50 5.25 -226.15 -1.19 -7.69 16 21 C 0.07 1.01 4.01 -4.97 -0.02 0.99 16 22 C 0.14 2.00 5.66 -82.59 -0.47 1.53 16 23 C -0.16 -1.83 9.72 -39.44 -0.38 -2.22 16 24 C -0.08 -0.75 10.18 -39.28 -0.40 -1.15 16 25 C -0.18 -1.67 10.11 -39.44 -0.40 -2.07 16 26 C 0.10 1.06 11.18 -17.55 -0.20 0.86 16 27 N -0.48 -6.58 8.96 -9.47 -0.08 -6.67 16 28 C -0.01 -0.32 10.85 -17.04 -0.18 -0.50 16 29 N -0.34 -9.61 9.73 30.80 0.30 -9.31 16 30 H 0.31 9.39 6.43 -40.82 -0.26 9.13 16 31 H 0.15 2.89 8.06 -52.49 -0.42 2.46 16 32 H 0.40 5.28 8.68 -40.82 -0.35 4.93 16 33 H 0.08 1.11 7.54 -51.93 -0.39 0.71 16 34 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 38 H 0.07 0.96 7.08 -51.93 -0.37 0.59 16 39 H 0.09 1.36 7.53 -51.93 -0.39 0.96 16 40 H 0.10 1.91 5.32 -51.93 -0.28 1.64 16 41 H 0.13 1.41 8.06 -52.48 -0.42 0.99 16 42 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 43 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 44 H 0.15 1.24 8.06 -52.49 -0.42 0.81 16 45 H 0.18 4.50 5.92 -52.48 -0.31 4.19 16 LS Contribution 369.22 15.07 5.56 5.56 Total: -1.00 -33.49 369.22 -9.31 -42.81 By element: Atomic # 1 Polarization: 22.23 SS G_CDS: -5.78 Total: 16.45 kcal Atomic # 6 Polarization: -7.20 SS G_CDS: -3.72 Total: -10.93 kcal Atomic # 7 Polarization: -59.87 SS G_CDS: -0.33 Total: -60.21 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: 0.06 Total: -10.69 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.10 Total: 17.01 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.49 -9.31 -42.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746182534.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.296 kcal (2) G-P(sol) polarization free energy of solvation -33.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds