Wall clock time and date at job start Sat Apr 11 2020 06:27:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31294 * 1 3 3 Si 1.86800 * 119.99608 * 2 1 4 4 H 1.48502 * 109.47023 * 269.99744 * 3 2 1 5 5 H 1.48496 * 109.47263 * 30.00192 * 3 2 1 6 6 H 1.48502 * 109.47131 * 150.00292 * 3 2 1 7 7 C 1.38987 * 120.00047 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99613 * 180.02562 * 7 2 1 9 9 N 1.37318 * 119.99949 * 0.27645 * 7 2 1 10 10 C 1.36500 * 126.06331 * 179.72360 * 9 7 2 11 11 C 1.35694 * 107.50480 * 179.97438 * 10 9 7 12 12 N 1.40540 * 126.08789 * 180.02562 * 11 10 9 13 13 C 1.34776 * 119.99895 * 180.02562 * 12 11 10 14 14 O 1.21624 * 120.00213 * 359.97438 * 13 12 11 15 15 C 1.47412 * 119.99417 * 179.97438 * 13 12 11 16 16 C 1.39981 * 120.61496 * 354.44867 * 15 13 12 17 17 C 1.38332 * 118.36836 * 179.75945 * 16 15 13 18 18 C 1.38377 * 119.50826 * 0.54102 * 17 16 15 19 19 N 1.31849 * 121.21674 * 359.70301 * 18 17 16 20 20 C 1.32418 * 121.78030 * 0.02562 * 19 18 17 21 21 N 1.38277 * 119.83079 * 180.02562 * 20 19 18 22 22 C 1.46843 * 111.00084 * 68.77516 * 21 20 19 23 23 C 1.53039 * 109.52291 * 174.16413 * 22 21 20 24 24 C 1.53115 * 109.27972 * 59.18250 * 23 22 21 25 25 C 1.53118 * 109.16087 * 302.34715 * 24 23 22 26 26 C 1.46852 * 110.99481 * 304.57052 * 21 20 19 27 27 C 1.40666 * 107.83007 * 0.02562 * 11 10 9 28 28 N 1.30905 * 108.38683 * 359.71528 * 27 11 10 29 29 H 0.97001 * 120.00415 * 0.02562 * 1 2 3 30 30 H 1.08000 * 126.24945 * 359.96453 * 10 9 7 31 31 H 0.96999 * 119.99308 * 359.97438 * 12 11 10 32 32 H 1.07996 * 120.81125 * 0.02562 * 16 15 13 33 33 H 1.07998 * 120.24385 * 180.26687 * 17 16 15 34 34 H 1.08000 * 119.38832 * 179.72086 * 18 17 16 35 35 H 1.08999 * 109.46557 * 294.17933 * 22 21 20 36 36 H 1.08997 * 109.46315 * 54.14742 * 22 21 20 37 37 H 1.08998 * 109.50482 * 299.24045 * 23 22 21 38 38 H 1.09005 * 109.50176 * 179.11938 * 23 22 21 39 39 H 1.08993 * 109.52744 * 182.43881 * 24 23 22 40 40 H 1.09004 * 109.57662 * 62.28119 * 24 23 22 41 41 H 1.09007 * 109.50165 * 297.71081 * 25 24 23 42 42 H 1.08999 * 109.54191 * 177.61315 * 25 24 23 43 43 H 1.09000 * 109.46115 * 305.84832 * 26 21 20 44 44 H 1.08995 * 109.46599 * 65.83077 * 26 21 20 45 45 H 1.07998 * 125.80855 * 180.02562 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2468 1.6178 0.0000 4 1 2.4943 2.0465 -1.4001 5 1 1.4443 2.6527 0.7001 6 1 3.5444 1.4403 0.7000 7 6 2.0079 -1.2037 0.0005 8 1 3.0879 -1.2036 0.0010 9 7 1.3213 -2.3929 -0.0047 10 6 1.8751 -3.6404 -0.0101 11 6 0.8579 -4.5385 -0.0135 12 7 0.9891 -5.9378 -0.0189 13 6 -0.1102 -6.7176 -0.0223 14 8 -1.2156 -6.2105 -0.0202 15 6 0.0275 -8.1853 -0.0286 16 6 1.2879 -8.7826 -0.1476 17 6 1.3638 -10.1638 -0.1431 18 6 0.2034 -10.9098 -0.0338 19 7 -0.9752 -10.3285 0.0722 20 6 -1.1049 -9.0107 0.0787 21 7 -2.3608 -8.4436 0.1925 22 6 -2.9237 -8.6751 1.5288 23 6 -4.2440 -7.9136 1.6666 24 6 -5.2206 -8.3961 0.5905 25 6 -4.5905 -8.1885 -0.7895 26 6 -3.2601 -8.9420 -0.8561 27 6 -0.3512 -3.8198 -0.0106 28 7 -0.0715 -2.5410 0.0005 29 1 -0.4851 0.8400 -0.0004 30 1 2.9303 -3.8707 -0.0117 31 1 1.8708 -6.3422 -0.0209 32 1 2.1796 -8.1797 -0.2363 33 1 2.3211 -10.6563 -0.2288 34 1 0.2645 -11.9881 -0.0351 35 1 -3.1032 -9.7412 1.6677 36 1 -2.2213 -8.3238 2.2846 37 1 -4.0632 -6.8460 1.5416 38 1 -4.6694 -8.0982 2.6531 39 1 -6.1472 -7.8261 0.6574 40 1 -5.4330 -9.4550 0.7384 41 1 -4.4151 -7.1252 -0.9532 42 1 -5.2630 -8.5689 -1.5583 43 1 -2.8020 -8.7844 -1.8325 44 1 -3.4381 -10.0068 -0.7060 45 1 -1.3419 -4.2498 -0.0117 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000747433868.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:27:31 Heat of formation + Delta-G solvation = 106.091054 kcal Electronic energy + Delta-G solvation = -29443.491839 eV Core-core repulsion = 25463.472699 eV Total energy + Delta-G solvation = -3980.019140 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.96992 -39.66659 -38.44490 -38.03192 -34.32439 -33.72494 -33.20043 -32.39169 -30.80474 -30.25296 -29.90612 -27.67936 -25.21170 -24.74195 -24.18428 -23.04227 -22.16860 -21.08731 -20.46287 -19.64971 -19.30556 -17.80679 -17.50323 -16.87814 -16.53297 -15.44784 -15.30064 -15.26917 -14.79411 -14.62515 -14.36972 -14.35453 -13.83275 -13.77727 -13.67907 -13.26202 -13.11968 -13.00375 -12.88936 -12.80886 -12.41190 -12.19181 -11.65339 -11.36278 -11.24323 -11.12493 -10.90587 -10.71527 -10.51991 -10.50878 -10.47109 -10.14625 -9.94422 -9.88605 -9.18736 -9.11015 -9.00153 -8.75862 -8.26311 -8.00682 -6.62587 -6.52405 -4.18452 0.62935 0.99380 2.94251 3.06587 3.11352 3.12291 3.53110 3.59355 3.63542 3.90001 3.95180 4.34245 4.53707 4.60446 4.71558 4.80579 4.84847 4.91473 4.95230 5.05560 5.07110 5.09465 5.29744 5.44231 5.45288 5.52742 5.63988 5.68171 5.80695 5.85781 5.89525 5.94012 5.96167 6.15720 6.26247 6.27867 6.28611 6.49706 6.53091 6.94908 7.00122 7.01827 7.19201 7.29985 7.35521 7.71580 7.90279 8.26480 8.34151 8.69967 8.98116 9.42210 9.72294 10.43568 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015161 B = 0.002844 C = 0.002464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.457457 B = 9844.237434 C =11358.821419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.046 3.954 3 Si 0.934 3.066 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.264 1.264 7 C -0.323 4.323 8 H 0.115 0.885 9 N -0.144 5.144 10 C -0.086 4.086 11 C -0.054 4.054 12 N -0.625 5.625 13 C 0.539 3.461 14 O -0.486 6.486 15 C -0.142 4.142 16 C -0.048 4.048 17 C -0.184 4.184 18 C 0.123 3.877 19 N -0.518 5.518 20 C 0.345 3.655 21 N -0.462 5.462 22 C 0.071 3.929 23 C -0.116 4.116 24 C -0.118 4.118 25 C -0.117 4.117 26 C 0.069 3.931 27 C -0.031 4.031 28 N -0.260 5.260 29 H 0.274 0.726 30 H 0.144 0.856 31 H 0.391 0.609 32 H 0.141 0.859 33 H 0.140 0.860 34 H 0.156 0.844 35 H 0.039 0.961 36 H 0.070 0.930 37 H 0.081 0.919 38 H 0.065 0.935 39 H 0.063 0.937 40 H 0.055 0.945 41 H 0.079 0.921 42 H 0.065 0.935 43 H 0.069 0.931 44 H 0.043 0.957 45 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.375 -19.708 0.481 19.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.171 4.171 3 Si 0.758 3.242 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.189 1.189 7 C -0.455 4.455 8 H 0.133 0.867 9 N 0.089 4.911 10 C -0.237 4.237 11 C -0.160 4.160 12 N -0.269 5.269 13 C 0.324 3.676 14 O -0.360 6.360 15 C -0.149 4.149 16 C -0.075 4.075 17 C -0.204 4.204 18 C -0.036 4.036 19 N -0.230 5.230 20 C 0.116 3.884 21 N -0.184 5.184 22 C -0.055 4.055 23 C -0.154 4.154 24 C -0.156 4.156 25 C -0.154 4.154 26 C -0.058 4.058 27 C -0.206 4.206 28 N -0.092 5.092 29 H 0.085 0.915 30 H 0.161 0.839 31 H 0.224 0.776 32 H 0.158 0.842 33 H 0.157 0.843 34 H 0.173 0.827 35 H 0.058 0.942 36 H 0.089 0.911 37 H 0.100 0.900 38 H 0.084 0.916 39 H 0.082 0.918 40 H 0.074 0.926 41 H 0.098 0.902 42 H 0.083 0.917 43 H 0.087 0.913 44 H 0.061 0.939 45 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -2.617 -17.970 0.513 18.167 hybrid contribution 2.234 -0.828 -0.030 2.383 sum -0.382 -18.798 0.483 18.808 Atomic orbital electron populations 1.70217 1.06089 1.27899 1.35433 1.25626 0.95692 1.00201 0.95563 0.85846 0.79387 0.80080 0.78929 1.19633 1.20112 1.18856 1.19846 0.91615 0.80604 1.53484 0.86719 1.44530 1.04068 1.03239 1.39297 1.21239 0.96759 0.85449 1.20269 1.17231 0.94319 0.81085 1.23324 1.42456 1.07891 1.04545 1.72014 1.17553 0.84894 0.84971 0.80176 1.90740 1.24748 1.73404 1.47094 1.20935 0.93275 0.95413 1.05257 1.21829 0.96862 0.95224 0.93582 1.22040 1.00402 0.94328 1.03609 1.22698 0.87242 1.00367 0.93293 1.67908 1.28274 1.12445 1.14351 1.19799 0.91304 0.86070 0.91255 1.59799 0.99288 1.55078 1.04283 1.22008 0.96635 0.98188 0.88700 1.21580 0.93748 1.01856 0.98227 1.21552 0.98330 1.00596 0.95117 1.21585 0.94797 1.02208 0.96852 1.22007 0.92832 0.96889 0.94076 1.24144 0.98095 0.90628 1.07779 1.78249 0.90065 1.15168 1.25674 0.91515 0.83859 0.77558 0.84156 0.84256 0.82689 0.94229 0.91137 0.90047 0.91629 0.91797 0.92606 0.90240 0.91672 0.91264 0.93869 0.80556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.61 11.81 55.49 0.66 -20.95 16 2 C 0.05 1.20 5.50 -17.50 -0.10 1.10 16 3 Si 0.93 18.99 29.55 -169.99 -5.02 13.97 16 4 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 5 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 6 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 7 C -0.32 -8.59 10.25 -14.82 -0.15 -8.74 16 8 H 0.12 2.72 7.83 -52.49 -0.41 2.31 16 9 N -0.14 -3.95 3.74 -11.41 -0.04 -4.00 16 10 C -0.09 -2.03 11.49 -16.38 -0.19 -2.22 16 11 C -0.05 -1.25 6.90 -83.86 -0.58 -1.83 16 12 N -0.63 -11.26 5.42 -10.97 -0.06 -11.32 16 13 C 0.54 9.84 7.72 -12.53 -0.10 9.75 16 14 O -0.49 -10.43 12.23 5.26 0.06 -10.36 16 15 C -0.14 -2.07 5.91 -104.64 -0.62 -2.68 16 16 C -0.05 -0.51 9.63 -38.89 -0.37 -0.89 16 17 C -0.18 -1.58 10.09 -39.50 -0.40 -1.98 16 18 C 0.12 1.19 11.16 -17.49 -0.20 0.99 16 19 N -0.52 -6.63 9.70 -12.20 -0.12 -6.75 16 20 C 0.34 5.04 5.30 -155.18 -0.82 4.22 16 21 N -0.46 -6.91 2.60 -173.00 -0.45 -7.36 16 22 C 0.07 0.96 5.32 -3.83 -0.02 0.94 16 23 C -0.12 -1.42 6.09 -26.65 -0.16 -1.58 16 24 C -0.12 -1.28 6.00 -26.61 -0.16 -1.44 16 25 C -0.12 -1.39 6.09 -26.65 -0.16 -1.55 16 26 C 0.07 0.91 5.18 -3.83 -0.02 0.89 16 27 C -0.03 -0.81 10.85 -17.03 -0.18 -1.00 16 28 N -0.26 -7.60 10.40 30.80 0.32 -7.28 16 29 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 30 H 0.14 2.81 8.06 -52.49 -0.42 2.38 16 31 H 0.39 5.43 6.95 -40.82 -0.28 5.14 16 32 H 0.14 1.15 6.55 -52.49 -0.34 0.80 16 33 H 0.14 0.74 8.06 -52.49 -0.42 0.31 16 34 H 0.16 0.99 8.06 -52.49 -0.42 0.57 16 35 H 0.04 0.51 8.13 -51.93 -0.42 0.09 16 36 H 0.07 1.01 8.10 -51.93 -0.42 0.59 16 37 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.08 1.11 8.14 -51.92 -0.42 0.69 16 42 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.07 0.96 8.10 -51.93 -0.42 0.54 16 44 H 0.04 0.55 7.93 -51.93 -0.41 0.14 16 45 H 0.18 4.62 5.91 -52.49 -0.31 4.31 16 LS Contribution 371.09 15.07 5.59 5.59 Total: -1.00 -33.99 371.09 -9.25 -43.25 By element: Atomic # 1 Polarization: 17.19 SS G_CDS: -5.96 Total: 11.23 kcal Atomic # 6 Polarization: -1.79 SS G_CDS: -4.23 Total: -6.02 kcal Atomic # 7 Polarization: -57.96 SS G_CDS: 0.31 Total: -57.66 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: 0.06 Total: -10.36 kcal Atomic # 14 Polarization: 18.99 SS G_CDS: -5.02 Total: 13.97 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.99 -9.25 -43.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000747433868.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.341 kcal (2) G-P(sol) polarization free energy of solvation -33.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds