Wall clock time and date at job start Sat Apr 11 2020 06:27:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31294 * 1 3 3 Si 1.86800 * 119.99608 * 2 1 4 4 H 1.48502 * 109.47023 * 269.99744 * 3 2 1 5 5 H 1.48496 * 109.47263 * 30.00192 * 3 2 1 6 6 H 1.48502 * 109.47131 * 150.00292 * 3 2 1 7 7 C 1.38987 * 120.00047 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99613 * 180.02562 * 7 2 1 9 9 N 1.37318 * 119.99949 * 0.27645 * 7 2 1 10 10 C 1.36500 * 126.06331 * 179.72360 * 9 7 2 11 11 C 1.35694 * 107.50480 * 179.97438 * 10 9 7 12 12 N 1.40540 * 126.08789 * 180.02562 * 11 10 9 13 13 C 1.34776 * 119.99895 * 180.02562 * 12 11 10 14 14 O 1.21624 * 120.00213 * 359.97438 * 13 12 11 15 15 C 1.47412 * 119.99417 * 179.97438 * 13 12 11 16 16 C 1.39981 * 120.61496 * 354.44867 * 15 13 12 17 17 C 1.38332 * 118.36836 * 179.75945 * 16 15 13 18 18 C 1.38377 * 119.50826 * 0.54102 * 17 16 15 19 19 N 1.31849 * 121.21674 * 359.70301 * 18 17 16 20 20 C 1.32418 * 121.78030 * 0.02562 * 19 18 17 21 21 N 1.38277 * 119.83079 * 180.02562 * 20 19 18 22 22 C 1.46843 * 111.00084 * 68.77516 * 21 20 19 23 23 C 1.53039 * 109.52291 * 174.16413 * 22 21 20 24 24 C 1.53115 * 109.27972 * 59.18250 * 23 22 21 25 25 C 1.53118 * 109.16087 * 302.34715 * 24 23 22 26 26 C 1.46852 * 110.99481 * 304.57052 * 21 20 19 27 27 C 1.40666 * 107.83007 * 0.02562 * 11 10 9 28 28 N 1.30905 * 108.38683 * 359.71528 * 27 11 10 29 29 H 0.97001 * 120.00415 * 0.02562 * 1 2 3 30 30 H 1.08000 * 126.24945 * 359.96453 * 10 9 7 31 31 H 0.96999 * 119.99308 * 359.97438 * 12 11 10 32 32 H 1.07996 * 120.81125 * 0.02562 * 16 15 13 33 33 H 1.07998 * 120.24385 * 180.26687 * 17 16 15 34 34 H 1.08000 * 119.38832 * 179.72086 * 18 17 16 35 35 H 1.08999 * 109.46557 * 294.17933 * 22 21 20 36 36 H 1.08997 * 109.46315 * 54.14742 * 22 21 20 37 37 H 1.08998 * 109.50482 * 299.24045 * 23 22 21 38 38 H 1.09005 * 109.50176 * 179.11938 * 23 22 21 39 39 H 1.08993 * 109.52744 * 182.43881 * 24 23 22 40 40 H 1.09004 * 109.57662 * 62.28119 * 24 23 22 41 41 H 1.09007 * 109.50165 * 297.71081 * 25 24 23 42 42 H 1.08999 * 109.54191 * 177.61315 * 25 24 23 43 43 H 1.09000 * 109.46115 * 305.84832 * 26 21 20 44 44 H 1.08995 * 109.46599 * 65.83077 * 26 21 20 45 45 H 1.07998 * 125.80855 * 180.02562 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2468 1.6178 0.0000 4 1 2.4943 2.0465 -1.4001 5 1 1.4443 2.6527 0.7001 6 1 3.5444 1.4403 0.7000 7 6 2.0079 -1.2037 0.0005 8 1 3.0879 -1.2036 0.0010 9 7 1.3213 -2.3929 -0.0047 10 6 1.8751 -3.6404 -0.0101 11 6 0.8579 -4.5385 -0.0135 12 7 0.9891 -5.9378 -0.0189 13 6 -0.1102 -6.7176 -0.0223 14 8 -1.2156 -6.2105 -0.0202 15 6 0.0275 -8.1853 -0.0286 16 6 1.2879 -8.7826 -0.1476 17 6 1.3638 -10.1638 -0.1431 18 6 0.2034 -10.9098 -0.0338 19 7 -0.9752 -10.3285 0.0722 20 6 -1.1049 -9.0107 0.0787 21 7 -2.3608 -8.4436 0.1925 22 6 -2.9237 -8.6751 1.5288 23 6 -4.2440 -7.9136 1.6666 24 6 -5.2206 -8.3961 0.5905 25 6 -4.5905 -8.1885 -0.7895 26 6 -3.2601 -8.9420 -0.8561 27 6 -0.3512 -3.8198 -0.0106 28 7 -0.0715 -2.5410 0.0005 29 1 -0.4851 0.8400 -0.0004 30 1 2.9303 -3.8707 -0.0117 31 1 1.8708 -6.3422 -0.0209 32 1 2.1796 -8.1797 -0.2363 33 1 2.3211 -10.6563 -0.2288 34 1 0.2645 -11.9881 -0.0351 35 1 -3.1032 -9.7412 1.6677 36 1 -2.2213 -8.3238 2.2846 37 1 -4.0632 -6.8460 1.5416 38 1 -4.6694 -8.0982 2.6531 39 1 -6.1472 -7.8261 0.6574 40 1 -5.4330 -9.4550 0.7384 41 1 -4.4151 -7.1252 -0.9532 42 1 -5.2630 -8.5689 -1.5583 43 1 -2.8020 -8.7844 -1.8325 44 1 -3.4381 -10.0068 -0.7060 45 1 -1.3419 -4.2498 -0.0117 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000747433868.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:27:29 Heat of formation + Delta-G solvation = 84.287158 kcal Electronic energy + Delta-G solvation = -29444.437327 eV Core-core repulsion = 25463.472699 eV Total energy + Delta-G solvation = -3980.964628 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.05466 -41.43458 -39.76967 -39.21482 -35.89191 -35.10884 -34.63117 -33.50017 -32.17239 -31.83601 -30.94438 -29.47179 -26.93400 -25.75946 -25.38889 -24.07316 -23.20933 -22.83271 -21.97823 -21.15551 -20.61574 -19.32253 -18.80835 -18.10844 -17.61791 -17.38035 -16.58765 -16.41168 -15.96919 -15.88293 -15.80645 -15.50215 -15.27968 -15.06270 -14.74626 -14.68688 -14.61780 -14.31658 -13.95785 -13.87197 -13.47560 -13.34954 -13.22870 -13.20661 -12.89207 -12.81116 -12.18956 -12.07813 -11.77662 -11.68172 -11.48762 -11.44386 -10.96299 -10.91971 -10.83540 -10.76474 -10.58761 -10.06478 -9.95268 -9.32621 -8.46084 -8.44237 -6.20712 -0.33113 0.15387 1.29874 1.40756 1.58537 1.70020 1.99949 2.06147 2.30184 2.52042 2.61094 2.90424 2.94749 3.12172 3.49549 3.81077 3.83507 3.86695 3.91724 3.99662 4.10857 4.26018 4.26983 4.40302 4.46202 4.50632 4.51807 4.61833 4.67794 4.79237 4.80409 4.94069 4.96723 5.03132 5.05503 5.09254 5.16246 5.21092 5.25676 5.32763 5.44302 5.53221 5.53706 5.98628 5.99065 6.33842 6.38310 6.76539 6.78558 6.89268 7.48157 7.52726 7.73153 8.55145 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015161 B = 0.002844 C = 0.002464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.457457 B = 9844.237434 C =11358.821419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C -0.007 4.007 3 Si 1.019 2.981 4 H -0.264 1.264 5 H -0.278 1.278 6 H -0.244 1.244 7 C -0.354 4.354 8 H 0.141 0.859 9 N -0.169 5.169 10 C -0.082 4.082 11 C -0.038 4.038 12 N -0.617 5.617 13 C 0.539 3.461 14 O -0.527 6.527 15 C -0.172 4.172 16 C -0.041 4.041 17 C -0.166 4.166 18 C 0.127 3.873 19 N -0.534 5.534 20 C 0.328 3.672 21 N -0.487 5.487 22 C 0.076 3.924 23 C -0.115 4.115 24 C -0.112 4.112 25 C -0.115 4.115 26 C 0.074 3.926 27 C -0.057 4.057 28 N -0.310 5.310 29 H 0.275 0.725 30 H 0.188 0.812 31 H 0.414 0.586 32 H 0.167 0.833 33 H 0.186 0.814 34 H 0.194 0.806 35 H 0.049 0.951 36 H 0.052 0.948 37 H 0.048 0.952 38 H 0.085 0.915 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.048 0.952 42 H 0.087 0.913 43 H 0.054 0.946 44 H 0.051 0.949 45 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.553 -22.429 0.470 22.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.219 4.219 3 Si 0.838 3.162 4 H -0.189 1.189 5 H -0.203 1.203 6 H -0.167 1.167 7 C -0.485 4.485 8 H 0.158 0.842 9 N 0.062 4.938 10 C -0.232 4.232 11 C -0.144 4.144 12 N -0.264 5.264 13 C 0.326 3.674 14 O -0.403 6.403 15 C -0.180 4.180 16 C -0.068 4.068 17 C -0.185 4.185 18 C -0.032 4.032 19 N -0.246 5.246 20 C 0.099 3.901 21 N -0.210 5.210 22 C -0.050 4.050 23 C -0.153 4.153 24 C -0.149 4.149 25 C -0.153 4.153 26 C -0.053 4.053 27 C -0.233 4.233 28 N -0.142 5.142 29 H 0.085 0.915 30 H 0.205 0.795 31 H 0.251 0.749 32 H 0.184 0.816 33 H 0.203 0.797 34 H 0.211 0.789 35 H 0.067 0.933 36 H 0.071 0.929 37 H 0.066 0.934 38 H 0.104 0.896 39 H 0.093 0.907 40 H 0.092 0.908 41 H 0.067 0.933 42 H 0.105 0.895 43 H 0.072 0.928 44 H 0.069 0.931 45 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 0.348 -20.753 0.501 20.762 hybrid contribution 1.368 -0.281 -0.037 1.397 sum 1.717 -21.034 0.465 21.109 Atomic orbital electron populations 1.70409 1.08433 1.28984 1.37532 1.26877 0.96459 1.04325 0.94212 0.84597 0.78306 0.74121 0.79193 1.18933 1.20310 1.16663 1.20605 0.92942 0.80916 1.54054 0.84175 1.44822 1.03614 1.04773 1.40631 1.21975 0.98745 0.84198 1.18302 1.17290 0.92839 0.83473 1.20815 1.42343 1.09380 1.02378 1.72308 1.18246 0.84128 0.86720 0.78305 1.90725 1.26398 1.74660 1.48508 1.20674 0.95444 0.92663 1.09185 1.22175 0.95870 0.96700 0.92045 1.22509 1.01987 0.93154 1.00828 1.23497 0.86625 1.02317 0.90763 1.67949 1.30138 1.11269 1.15293 1.19857 0.91039 0.86990 0.92198 1.59747 1.00146 1.56270 1.04869 1.21944 0.96512 0.98568 0.87960 1.21569 0.94009 0.99681 0.99998 1.21524 0.98053 1.01778 0.93572 1.21579 0.94968 1.00216 0.98493 1.21957 0.92931 0.97302 0.93075 1.24145 0.99018 0.90845 1.09247 1.78144 0.92033 1.16599 1.27453 0.91504 0.79481 0.74865 0.81564 0.79680 0.78895 0.93318 0.92949 0.93351 0.89641 0.90686 0.90756 0.93308 0.89466 0.92761 0.93062 0.81717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -48.46 11.81 21.66 0.26 -48.21 16 2 C -0.01 -0.39 5.50 84.95 0.47 0.08 16 3 Si 1.02 39.04 29.55 68.60 2.03 41.07 16 4 H -0.26 -9.76 7.11 99.48 0.71 -9.05 16 5 H -0.28 -10.59 7.11 99.48 0.71 -9.88 16 6 H -0.24 -8.42 7.11 99.48 0.71 -7.71 16 7 C -0.35 -18.96 10.25 84.01 0.86 -18.10 16 8 H 0.14 6.47 7.83 -2.91 -0.02 6.44 16 9 N -0.17 -9.53 3.74 -190.00 -0.71 -10.24 16 10 C -0.08 -3.83 11.49 83.38 0.96 -2.87 16 11 C -0.04 -1.78 6.90 37.75 0.26 -1.52 16 12 N -0.62 -22.00 5.42 -306.87 -1.66 -23.67 16 13 C 0.54 20.16 7.72 86.66 0.67 20.83 16 14 O -0.53 -24.18 12.23 -4.11 -0.05 -24.23 16 15 C -0.17 -4.92 5.91 -19.88 -0.12 -5.04 16 16 C -0.04 -0.75 9.63 22.71 0.22 -0.53 16 17 C -0.17 -2.03 10.09 22.33 0.23 -1.80 16 18 C 0.13 1.94 11.16 84.72 0.95 2.88 16 19 N -0.53 -12.69 9.70 -192.50 -1.87 -14.55 16 20 C 0.33 9.52 5.30 133.65 0.71 10.23 16 21 N -0.49 -15.18 2.60 -701.26 -1.82 -17.00 16 22 C 0.08 2.14 5.32 86.33 0.46 2.60 16 23 C -0.11 -2.93 6.09 30.65 0.19 -2.74 16 24 C -0.11 -2.41 6.00 30.67 0.18 -2.22 16 25 C -0.11 -2.84 6.09 30.65 0.19 -2.66 16 26 C 0.07 2.02 5.18 86.33 0.45 2.47 16 27 C -0.06 -3.21 10.85 85.42 0.93 -2.28 16 28 N -0.31 -19.10 10.40 -56.46 -0.59 -19.69 16 29 H 0.28 14.88 8.31 -92.71 -0.77 14.11 16 30 H 0.19 6.80 8.06 -2.91 -0.02 6.78 16 31 H 0.41 10.57 6.95 -92.71 -0.64 9.93 16 32 H 0.17 2.01 6.55 -2.91 -0.02 1.99 16 33 H 0.19 0.65 8.06 -2.91 -0.02 0.63 16 34 H 0.19 1.41 8.06 -2.91 -0.02 1.39 16 35 H 0.05 1.24 8.13 -2.39 -0.02 1.22 16 36 H 0.05 1.60 8.10 -2.39 -0.02 1.58 16 37 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.09 1.79 8.14 -2.38 -0.02 1.77 16 39 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.07 1.35 8.14 -2.38 -0.02 1.34 16 41 H 0.05 1.49 8.14 -2.38 -0.02 1.47 16 42 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 43 H 0.05 1.59 8.10 -2.39 -0.02 1.57 16 44 H 0.05 1.29 7.93 -2.39 -0.02 1.27 16 45 H 0.17 9.45 5.91 -2.91 -0.02 9.43 16 Total: -1.00 -81.81 371.09 3.56 -78.26 By element: Atomic # 1 Polarization: 38.55 SS G_CDS: 0.38 Total: 38.94 kcal Atomic # 6 Polarization: -8.27 SS G_CDS: 7.59 Total: -0.68 kcal Atomic # 7 Polarization: -126.96 SS G_CDS: -6.39 Total: -133.36 kcal Atomic # 8 Polarization: -24.18 SS G_CDS: -0.05 Total: -24.23 kcal Atomic # 14 Polarization: 39.04 SS G_CDS: 2.03 Total: 41.07 kcal Total: -81.81 3.56 -78.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000747433868.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.543 kcal (2) G-P(sol) polarization free energy of solvation -81.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.256 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds