Wall clock time and date at job start Sat Apr 11 2020 06:27:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 120.00205 * 2 1 4 4 H 1.48500 * 109.47089 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47332 * 299.99902 * 3 2 1 6 6 H 1.48498 * 109.47445 * 59.99876 * 3 2 1 7 7 C 1.37882 * 119.99750 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99582 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99838 * 0.02562 * 7 2 1 10 10 C 1.53042 * 109.45769 * 180.02562 * 9 7 2 11 11 C 1.53195 * 109.31019 * 178.62782 * 10 9 7 12 12 N 1.46923 * 108.77619 * 54.63147 * 11 10 9 13 13 C 1.34783 * 120.62713 * 126.36536 * 12 11 10 14 14 O 1.21588 * 119.99480 * 174.96088 * 13 12 11 15 15 N 1.34769 * 120.00215 * 354.96765 * 13 12 11 16 16 C 1.40213 * 120.00291 * 185.19059 * 15 13 12 17 17 C 1.39962 * 126.71138 * 359.70466 * 16 15 13 18 18 N 1.30947 * 108.23299 * 179.82472 * 17 16 15 19 19 N 1.28697 * 109.71904 * 0.44934 * 18 17 16 20 20 C 1.40154 * 125.67201 * 179.73232 * 19 18 17 21 21 C 1.38852 * 120.07425 * 179.70047 * 20 19 18 22 22 C 1.38109 * 119.93130 * 179.74933 * 21 20 19 23 23 C 1.38277 * 120.07124 * 0.53076 * 22 21 20 24 24 C 1.38285 * 120.13623 * 359.74885 * 23 22 21 25 25 C 1.38113 * 120.06505 * 359.97139 * 24 23 22 26 26 N 1.31871 * 126.72209 * 180.02562 * 16 15 13 27 27 C 1.46928 * 118.74020 * 306.64550 * 12 11 10 28 28 C 1.52757 * 109.00713 * 53.30821 * 27 12 11 29 29 H 0.96998 * 119.99479 * 0.02562 * 1 2 3 30 30 H 1.09003 * 109.46164 * 299.97281 * 9 7 2 31 31 H 1.09001 * 109.50008 * 58.67221 * 10 9 7 32 32 H 1.09003 * 109.51833 * 298.59419 * 10 9 7 33 33 H 1.08993 * 109.58581 * 294.84198 * 11 10 9 34 34 H 1.09005 * 109.69949 * 174.48763 * 11 10 9 35 35 H 0.97000 * 120.00277 * 5.18406 * 15 13 12 36 36 H 1.08000 * 125.88693 * 0.02562 * 17 16 15 37 37 H 1.07999 * 120.03188 * 0.02562 * 21 20 19 38 38 H 1.08001 * 119.96600 * 180.27323 * 22 21 20 39 39 H 1.08001 * 119.93339 * 179.71836 * 23 22 21 40 40 H 1.08003 * 119.96889 * 180.02562 * 24 23 22 41 41 H 1.07998 * 120.03318 * 180.02562 * 25 24 23 42 42 H 1.08997 * 109.58174 * 173.14564 * 27 12 11 43 43 H 1.09002 * 109.58301 * 293.56712 * 27 12 11 44 44 H 1.09004 * 109.55850 * 185.55347 * 28 27 12 45 45 H 1.08998 * 109.38684 * 65.51917 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2456 -3.6623 0.0018 11 6 1.4764 -4.9866 0.0364 12 7 0.5230 -5.0092 -1.0812 13 6 0.5135 -6.0353 -1.9551 14 8 -0.3386 -6.0885 -2.8208 15 7 1.4484 -7.0022 -1.8693 16 6 1.5057 -8.0103 -2.8421 17 6 0.6640 -8.1514 -3.9514 18 7 1.0412 -9.2126 -4.6195 19 7 2.0423 -9.7647 -4.0285 20 6 2.7056 -10.9234 -4.4549 21 6 3.7812 -11.4166 -3.7284 22 6 4.4294 -12.5615 -4.1483 23 6 4.0153 -13.2105 -5.2970 24 6 2.9481 -12.7186 -6.0259 25 6 2.2921 -11.5773 -5.6079 26 7 2.3594 -9.0144 -2.8877 27 6 -0.4156 -3.8889 -1.2318 28 6 0.3711 -2.5796 -1.2490 29 1 -0.4849 0.8401 -0.0004 30 1 0.6243 -2.5567 0.8906 31 1 2.8874 -3.5912 0.8800 32 1 2.8567 -3.6198 -0.8998 33 1 0.9362 -5.0709 0.9793 34 1 2.1734 -5.8190 -0.0610 35 1 2.0817 -7.0007 -1.1346 36 1 -0.1534 -7.4960 -4.2133 37 1 4.1077 -10.9079 -2.8334 38 1 5.2633 -12.9481 -3.5812 39 1 4.5267 -14.1031 -5.6258 40 1 2.6267 -13.2278 -6.9225 41 1 1.4585 -11.1938 -6.1774 42 1 -0.9651 -3.9958 -2.1671 43 1 -1.1134 -3.8818 -0.3944 44 1 -0.3215 -1.7379 -1.2611 45 1 0.9993 -2.5466 -2.1391 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000757840736.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:27:39 Heat of formation + Delta-G solvation = 124.977638 kcal Electronic energy + Delta-G solvation = -28393.885304 eV Core-core repulsion = 24414.685148 eV Total energy + Delta-G solvation = -3979.200156 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 2.66 seconds Orbital eigenvalues (eV) -42.70598 -40.39378 -39.39654 -37.29742 -35.36831 -33.83152 -33.15237 -32.08898 -31.26182 -31.09332 -30.22522 -29.06127 -26.36585 -24.25104 -23.88428 -23.13730 -22.57482 -21.69635 -21.48260 -20.27184 -19.13710 -18.29567 -17.99590 -16.98603 -16.49154 -16.45790 -16.38163 -15.42821 -15.30342 -15.15699 -14.72273 -14.58224 -14.32562 -13.91236 -13.83754 -13.42177 -13.24215 -12.96638 -12.79901 -12.50896 -12.20218 -11.98388 -11.70144 -11.68732 -11.63745 -11.25012 -11.00554 -10.94735 -10.70413 -10.52495 -10.34124 -10.15640 -10.06632 -9.66314 -9.52279 -9.41304 -9.30685 -9.01582 -8.45696 -8.32277 -8.03299 -6.08066 -4.14602 0.42708 0.93838 1.58893 1.71790 2.33750 2.57967 3.24428 3.30468 3.33533 3.36461 3.40551 3.74343 4.00858 4.36808 4.50223 4.59334 4.71936 4.75487 4.95145 5.11783 5.17177 5.19742 5.22287 5.43933 5.59778 5.60173 5.69844 5.78555 5.88609 5.94646 5.96417 6.08645 6.12393 6.28828 6.31062 6.36445 6.43694 6.47440 6.60821 6.77643 6.82699 6.89464 7.09399 7.29653 7.63068 7.77922 7.84859 7.95183 8.00776 8.33022 8.47650 8.88810 9.51059 10.97545 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.026466 B = 0.001951 C = 0.001895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.717937 B =14347.836820 C =14772.349356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.062 3.938 3 Si 0.891 3.109 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.514 4.514 8 H 0.055 0.945 9 C 0.049 3.951 10 C -0.125 4.125 11 C 0.107 3.893 12 N -0.604 5.604 13 C 0.713 3.287 14 O -0.576 6.576 15 N -0.642 5.642 16 C 0.309 3.691 17 C -0.017 4.017 18 N -0.236 5.236 19 N -0.183 5.183 20 C 0.177 3.823 21 C -0.117 4.117 22 C -0.098 4.098 23 C -0.128 4.128 24 C -0.098 4.098 25 C -0.120 4.120 26 N -0.315 5.315 27 C 0.126 3.874 28 C -0.126 4.126 29 H 0.261 0.739 30 H 0.029 0.971 31 H 0.064 0.936 32 H 0.054 0.946 33 H 0.071 0.929 34 H 0.059 0.941 35 H 0.416 0.584 36 H 0.222 0.778 37 H 0.139 0.861 38 H 0.133 0.867 39 H 0.129 0.871 40 H 0.134 0.866 41 H 0.140 0.860 42 H 0.080 0.920 43 H 0.063 0.937 44 H 0.107 0.893 45 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.323 -23.335 -6.498 24.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.140 4.140 3 Si 0.719 3.281 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.552 4.552 8 H 0.074 0.926 9 C 0.030 3.970 10 C -0.163 4.163 11 C -0.015 4.015 12 N -0.339 5.339 13 C 0.415 3.585 14 O -0.453 6.453 15 N -0.297 5.297 16 C 0.047 3.953 17 C -0.207 4.207 18 N -0.071 5.071 19 N -0.073 5.073 20 C 0.085 3.915 21 C -0.139 4.139 22 C -0.117 4.117 23 C -0.147 4.147 24 C -0.116 4.116 25 C -0.141 4.141 26 N -0.154 5.154 27 C 0.005 3.995 28 C -0.164 4.164 29 H 0.071 0.929 30 H 0.047 0.953 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.090 0.910 34 H 0.078 0.922 35 H 0.256 0.744 36 H 0.239 0.761 37 H 0.157 0.843 38 H 0.151 0.849 39 H 0.146 0.854 40 H 0.151 0.849 41 H 0.158 0.842 42 H 0.099 0.901 43 H 0.081 0.919 44 H 0.125 0.875 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 5.173 -24.193 -7.416 25.828 hybrid contribution 0.451 1.842 0.820 2.066 sum 5.624 -22.351 -6.596 23.973 Atomic orbital electron populations 1.69838 1.05843 1.26489 1.50654 1.24963 0.94879 0.99123 0.95005 0.86557 0.80120 0.83835 0.77602 1.19868 1.21036 1.21037 1.21200 0.92933 0.90497 1.50575 0.92643 1.18641 0.92569 0.91575 0.94207 1.22037 0.99016 0.93951 1.01292 1.21872 0.91193 0.99323 0.89159 1.47516 1.38225 1.20445 1.27696 1.15611 0.80922 0.79398 0.82609 1.90796 1.38813 1.77753 1.37917 1.41979 1.36188 1.24514 1.27062 1.19795 0.94250 0.89714 0.91583 1.25253 1.04634 0.97380 0.93418 1.73439 1.02121 1.08739 1.22835 1.47551 1.22734 1.20639 1.16416 1.17333 0.94130 0.84153 0.95861 1.20927 0.94782 0.97309 1.00834 1.21041 0.99592 0.94414 0.96649 1.21274 0.97419 1.00470 0.95509 1.21031 0.95506 0.95170 0.99926 1.20939 1.01724 0.96205 0.95254 1.78109 1.23603 1.07039 1.06632 1.21847 0.90789 0.84987 1.01898 1.21995 1.00268 0.94756 0.99405 0.92927 0.95278 0.91777 0.92696 0.91027 0.92238 0.74413 0.76148 0.84279 0.84892 0.85354 0.84854 0.84227 0.90113 0.91875 0.87455 0.94188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.94 11.31 55.43 0.63 -23.31 16 2 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 3 Si 0.89 20.47 29.54 -169.99 -5.02 15.44 16 4 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.51 -13.15 8.56 -34.44 -0.29 -13.44 16 8 H 0.06 1.42 7.74 -52.49 -0.41 1.01 16 9 C 0.05 1.08 2.07 -91.73 -0.19 0.89 16 10 C -0.12 -2.22 5.30 -26.61 -0.14 -2.36 16 11 C 0.11 1.55 6.44 -3.71 -0.02 1.52 16 12 N -0.60 -9.89 2.98 -178.76 -0.53 -10.43 16 13 C 0.71 11.69 8.26 -86.92 -0.72 10.98 16 14 O -0.58 -10.63 13.01 5.29 0.07 -10.57 16 15 N -0.64 -8.98 5.36 -15.47 -0.08 -9.07 16 16 C 0.31 4.64 8.19 -153.96 -1.26 3.38 16 17 C -0.02 -0.27 10.85 -17.28 -0.19 -0.45 16 18 N -0.24 -3.50 11.24 30.66 0.34 -3.15 16 19 N -0.18 -2.62 4.44 32.48 0.14 -2.47 16 20 C 0.18 2.09 6.74 -83.60 -0.56 1.53 16 21 C -0.12 -1.16 9.65 -39.40 -0.38 -1.54 16 22 C -0.10 -0.71 10.04 -39.61 -0.40 -1.11 16 23 C -0.13 -0.82 10.04 -39.55 -0.40 -1.22 16 24 C -0.10 -0.70 10.04 -39.61 -0.40 -1.10 16 25 C -0.12 -1.17 9.61 -39.40 -0.38 -1.55 16 26 N -0.32 -4.63 11.97 31.47 0.38 -4.25 16 27 C 0.13 2.30 6.39 -3.93 -0.03 2.28 16 28 C -0.13 -2.72 5.14 -26.84 -0.14 -2.85 16 29 H 0.26 6.74 8.31 -40.82 -0.34 6.41 16 30 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 34 H 0.06 0.67 5.56 -51.93 -0.29 0.38 16 35 H 0.42 4.83 6.28 -40.82 -0.26 4.57 16 36 H 0.22 3.39 5.99 -52.49 -0.31 3.08 16 37 H 0.14 1.37 7.68 -52.49 -0.40 0.97 16 38 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 39 H 0.13 0.50 8.06 -52.49 -0.42 0.07 16 40 H 0.13 0.61 8.06 -52.48 -0.42 0.19 16 41 H 0.14 1.34 7.68 -52.49 -0.40 0.94 16 42 H 0.08 1.49 7.04 -51.93 -0.37 1.12 16 43 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 44 H 0.11 2.62 6.04 -51.93 -0.31 2.31 16 45 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 369.13 15.07 5.56 5.56 Total: -1.00 -29.59 369.13 -9.79 -39.38 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: -5.69 Total: 6.39 kcal Atomic # 6 Polarization: 2.06 SS G_CDS: -5.59 Total: -3.53 kcal Atomic # 7 Polarization: -53.56 SS G_CDS: 0.88 Total: -52.68 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: 0.07 Total: -10.57 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -29.59 -9.79 -39.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000757840736.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.359 kcal (2) G-P(sol) polarization free energy of solvation -29.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.381 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.66 seconds