Wall clock time and date at job start Sat Apr 11 2020 06:27:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86800 * 120.00142 * 2 1 4 4 H 1.48496 * 109.47272 * 240.00254 * 3 2 1 5 5 H 1.48504 * 109.47005 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46847 * 120.00295 * 3 2 1 7 7 C 1.37876 * 119.99496 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99485 * 179.97438 * 7 2 1 9 9 C 1.50692 * 120.00444 * 359.97438 * 7 2 1 10 10 C 1.53043 * 109.46385 * 179.97438 * 9 7 2 11 11 C 1.53186 * 109.31205 * 181.37173 * 10 9 7 12 12 N 1.46925 * 108.89731 * 305.29353 * 11 10 9 13 13 C 1.34775 * 120.63054 * 233.68083 * 12 11 10 14 14 O 1.21590 * 120.00118 * 174.73441 * 13 12 11 15 15 N 1.34779 * 120.00159 * 354.73327 * 13 12 11 16 16 C 1.39988 * 120.00193 * 185.34878 * 15 13 12 17 17 C 1.38893 * 120.00436 * 214.48604 * 16 15 13 18 18 C 1.38020 * 119.99450 * 179.76863 * 17 16 15 19 19 C 1.38866 * 120.00306 * 0.50655 * 18 17 16 20 20 N 1.40258 * 119.99672 * 179.72409 * 19 18 17 21 21 N 1.28591 * 124.61217 * 179.72529 * 20 19 18 22 22 C 1.31446 * 108.72216 * 179.86339 * 21 20 19 23 23 C 1.39697 * 105.88971 * 0.37590 * 22 21 20 24 24 N 1.28602 * 124.61098 * 0.02562 * 20 19 18 25 25 C 1.38869 * 120.00645 * 359.74751 * 19 18 17 26 26 C 1.38013 * 120.00693 * 359.97438 * 25 19 18 27 27 C 1.47201 * 118.55604 * 53.53683 * 12 11 10 28 28 C 1.53038 * 109.44941 * 300.06060 * 9 7 2 29 29 H 0.97005 * 119.99658 * 359.97438 * 1 2 3 30 30 H 1.09006 * 109.46174 * 60.02566 * 9 7 2 31 31 H 1.08999 * 109.49558 * 61.41733 * 10 9 7 32 32 H 1.08996 * 109.51770 * 301.33809 * 10 9 7 33 33 H 1.09004 * 109.58859 * 65.15666 * 11 10 9 34 34 H 1.09007 * 109.58526 * 185.43284 * 11 10 9 35 35 H 0.96996 * 119.99757 * 5.34791 * 15 13 12 36 36 H 1.07995 * 120.00437 * 0.02562 * 17 16 15 37 37 H 1.07997 * 119.99500 * 180.22652 * 18 17 16 38 38 H 1.08004 * 127.05492 * 180.14300 * 22 21 20 39 39 H 1.08001 * 127.05584 * 179.75992 * 23 22 21 40 40 H 1.08000 * 119.99630 * 179.97438 * 25 19 18 41 41 H 1.07994 * 120.00879 * 179.97438 * 26 25 19 42 42 H 1.08997 * 109.53747 * 186.67513 * 27 12 11 43 43 H 1.09003 * 109.67741 * 66.37383 * 27 12 11 44 44 H 1.08996 * 109.49955 * 298.57377 * 28 9 7 45 45 H 1.09005 * 109.50096 * 58.66807 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1031 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2457 -3.6623 -0.0018 11 6 1.4765 -4.9866 -0.0364 12 7 0.5234 -5.0126 1.0814 13 6 0.5160 -6.0401 1.9537 14 8 -0.2106 -6.0052 2.9280 15 7 1.3139 -7.1062 1.7459 16 6 1.2259 -8.2210 2.5880 17 6 2.3667 -8.9515 2.8949 18 6 2.2804 -10.0477 3.7290 19 6 1.0515 -10.4267 4.2529 20 7 0.9631 -11.5442 5.0959 21 7 -0.1250 -11.9699 5.6327 22 6 0.1492 -13.0321 6.3569 23 6 1.5259 -13.2343 6.2332 24 7 1.9602 -12.2792 5.4414 25 6 -0.0900 -9.6996 3.9419 26 6 -0.0033 -8.5999 3.1125 27 6 -0.4192 -3.8917 1.2287 28 6 0.3707 -2.5793 1.2487 29 1 -0.4850 0.8401 0.0004 30 1 0.6244 -2.5567 -0.8906 31 1 2.8564 -3.6196 0.9000 32 1 2.8877 -3.5914 -0.8797 33 1 0.9362 -5.0708 -0.9794 34 1 2.1753 -5.8176 0.0597 35 1 1.9491 -7.1011 1.0129 36 1 3.3218 -8.6592 2.4842 37 1 3.1681 -10.6135 3.9705 38 1 -0.5465 -13.6244 6.9328 39 1 2.1130 -14.0150 6.6939 40 1 -1.0458 -9.9947 4.3491 41 1 -0.8911 -8.0347 2.8703 42 1 -0.9716 -4.0001 2.1621 43 1 -1.1160 -3.8855 0.3905 44 1 0.9987 -2.5467 2.1390 45 1 -0.3218 -1.7376 1.2605 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000781825457.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:27:48 Heat of formation + Delta-G solvation = 126.689084 kcal Electronic energy + Delta-G solvation = -28422.136563 eV Core-core repulsion = 24443.010620 eV Total energy + Delta-G solvation = -3979.125942 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 2.74 seconds Orbital eigenvalues (eV) -44.02541 -40.79966 -39.15597 -37.11319 -35.27362 -33.78292 -32.98225 -32.94640 -31.24435 -31.13320 -30.30341 -28.69470 -26.26938 -24.36717 -24.03246 -23.14452 -22.42671 -22.22134 -21.35592 -20.29885 -19.08257 -18.65937 -18.21701 -17.21083 -16.96282 -16.39594 -15.84184 -15.54139 -15.20380 -15.11126 -14.62885 -14.52477 -14.27997 -13.93860 -13.71537 -13.32183 -13.22298 -13.04527 -12.86708 -12.72754 -12.36973 -11.95962 -11.88217 -11.71476 -11.23543 -11.09841 -10.97268 -10.91126 -10.74018 -10.69759 -10.52745 -10.14041 -10.01321 -9.77742 -9.64635 -9.30868 -9.25295 -9.00562 -8.43436 -8.24755 -7.93149 -6.06954 -4.13852 0.48890 1.07590 1.88199 1.99887 2.14025 2.65643 3.16892 3.26950 3.32496 3.34575 3.60097 3.82912 3.89947 4.37146 4.53262 4.62315 4.69069 4.90712 5.02354 5.12589 5.14297 5.23040 5.30571 5.49628 5.61965 5.64921 5.72981 5.76092 5.79317 5.90347 6.02639 6.09215 6.16417 6.22372 6.30767 6.37912 6.49938 6.53518 6.65154 6.82261 6.85853 6.95009 7.12452 7.33648 7.63934 7.85694 7.95083 8.00949 8.02717 8.34016 8.61987 8.88992 9.51567 10.98481 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.034198 B = 0.001884 C = 0.001853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.555935 B =14861.251350 C =15107.318808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.062 3.938 3 Si 0.891 3.109 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.516 4.516 8 H 0.054 0.946 9 C 0.050 3.950 10 C -0.124 4.124 11 C 0.110 3.890 12 N -0.610 5.610 13 C 0.703 3.297 14 O -0.580 6.580 15 N -0.691 5.691 16 C 0.193 3.807 17 C -0.138 4.138 18 C -0.077 4.077 19 C 0.106 3.894 20 N -0.094 5.094 21 N -0.288 5.288 22 C -0.025 4.025 23 C -0.025 4.025 24 N -0.290 5.290 25 C -0.077 4.077 26 C -0.105 4.105 27 C 0.125 3.875 28 C -0.124 4.124 29 H 0.262 0.738 30 H 0.028 0.972 31 H 0.053 0.947 32 H 0.062 0.938 33 H 0.068 0.932 34 H 0.058 0.942 35 H 0.408 0.592 36 H 0.140 0.860 37 H 0.144 0.856 38 H 0.201 0.799 39 H 0.201 0.799 40 H 0.143 0.857 41 H 0.150 0.850 42 H 0.078 0.922 43 H 0.061 0.939 44 H 0.039 0.961 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.355 -23.978 5.863 24.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.139 4.139 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.554 4.554 8 H 0.072 0.928 9 C 0.031 3.969 10 C -0.163 4.163 11 C -0.013 4.013 12 N -0.346 5.346 13 C 0.405 3.595 14 O -0.457 6.457 15 N -0.341 5.341 16 C 0.095 3.905 17 C -0.159 4.159 18 C -0.099 4.099 19 C 0.015 3.985 20 N 0.013 4.987 21 N -0.127 5.127 22 C -0.207 4.207 23 C -0.207 4.207 24 N -0.130 5.130 25 C -0.098 4.098 26 C -0.127 4.127 27 C 0.003 3.997 28 C -0.163 4.163 29 H 0.072 0.928 30 H 0.046 0.954 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.077 0.923 35 H 0.247 0.753 36 H 0.157 0.843 37 H 0.161 0.839 38 H 0.218 0.782 39 H 0.218 0.782 40 H 0.161 0.839 41 H 0.168 0.832 42 H 0.097 0.903 43 H 0.079 0.921 44 H 0.058 0.942 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 1.712 -22.652 5.705 23.422 hybrid contribution 0.864 0.091 0.332 0.930 sum 2.576 -22.561 6.038 23.496 Atomic orbital electron populations 1.69827 1.05851 1.26692 1.50467 1.24962 0.94879 0.99100 0.94986 0.86668 0.79627 0.83178 0.78575 1.20316 1.21275 1.20340 1.21125 0.92839 0.90553 1.50849 0.92775 1.18624 0.92552 0.91538 0.94177 1.22023 0.98994 0.94113 1.01127 1.21800 0.91162 0.99172 0.89213 1.47599 1.37874 1.21135 1.27980 1.15842 0.80759 0.79833 0.83069 1.90912 1.44872 1.80568 1.29369 1.42996 1.42573 1.14990 1.33514 1.17693 0.93431 0.86925 0.92436 1.20746 0.97551 0.96976 1.00661 1.20618 0.95969 0.96882 0.96400 1.17358 0.96247 0.87618 0.97266 1.44888 1.00970 1.20455 1.32358 1.74120 1.13512 1.13484 1.11596 1.24917 0.96630 0.96591 1.02547 1.24902 0.94807 1.00005 1.00967 1.74087 1.17945 1.05284 1.15635 1.20785 0.97498 0.94011 0.97552 1.21107 0.97825 0.95541 0.98194 1.21917 0.90759 0.85407 1.01571 1.22041 1.00148 0.94751 0.99321 0.92827 0.95386 0.92796 0.91895 0.91399 0.92337 0.75268 0.84264 0.83860 0.78175 0.78185 0.83900 0.83239 0.90339 0.92082 0.94245 0.87636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.18 11.31 55.43 0.63 -23.55 16 2 C 0.06 1.64 5.30 -17.82 -0.09 1.55 16 3 Si 0.89 20.58 29.54 -169.99 -5.02 15.56 16 4 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.52 -13.32 8.56 -34.44 -0.29 -13.61 16 8 H 0.05 1.38 7.74 -52.48 -0.41 0.98 16 9 C 0.05 1.12 2.06 -91.73 -0.19 0.93 16 10 C -0.12 -2.24 5.30 -26.61 -0.14 -2.38 16 11 C 0.11 1.58 6.38 -3.71 -0.02 1.56 16 12 N -0.61 -10.18 2.98 -178.27 -0.53 -10.72 16 13 C 0.70 11.60 8.03 -86.92 -0.70 10.90 16 14 O -0.58 -11.34 13.56 5.29 0.07 -11.27 16 15 N -0.69 -8.69 5.25 -14.20 -0.07 -8.76 16 16 C 0.19 2.36 6.25 -83.64 -0.52 1.84 16 17 C -0.14 -1.39 9.96 -39.42 -0.39 -1.78 16 18 C -0.08 -0.82 9.58 -39.43 -0.38 -1.20 16 19 C 0.11 1.29 6.72 -83.53 -0.56 0.73 16 20 N -0.09 -1.17 4.13 32.51 0.13 -1.03 16 21 N -0.29 -3.40 11.21 30.69 0.34 -3.06 16 22 C -0.02 -0.20 12.20 -17.17 -0.21 -0.41 16 23 C -0.02 -0.20 12.20 -17.17 -0.21 -0.41 16 24 N -0.29 -3.31 11.21 30.69 0.34 -2.96 16 25 C -0.08 -0.94 9.58 -39.43 -0.38 -1.32 16 26 C -0.11 -1.37 8.64 -39.42 -0.34 -1.71 16 27 C 0.12 2.36 6.45 -3.56 -0.02 2.34 16 28 C -0.12 -2.75 5.15 -26.61 -0.14 -2.89 16 29 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 30 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.06 0.63 5.64 -51.92 -0.29 0.34 16 35 H 0.41 3.99 6.31 -40.82 -0.26 3.73 16 36 H 0.14 1.05 8.06 -52.49 -0.42 0.62 16 37 H 0.14 1.34 7.62 -52.49 -0.40 0.94 16 38 H 0.20 0.84 8.06 -52.48 -0.42 0.42 16 39 H 0.20 0.79 8.06 -52.49 -0.42 0.36 16 40 H 0.14 1.64 7.62 -52.49 -0.40 1.24 16 41 H 0.15 2.13 6.52 -52.49 -0.34 1.79 16 42 H 0.08 1.52 7.01 -51.93 -0.36 1.16 16 43 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 44 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 45 H 0.11 2.63 6.03 -51.93 -0.31 2.32 16 LS Contribution 368.71 15.07 5.56 5.56 Total: -1.00 -31.79 368.71 -8.86 -40.65 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -5.72 Total: 5.45 kcal Atomic # 6 Polarization: -1.28 SS G_CDS: -4.59 Total: -5.87 kcal Atomic # 7 Polarization: -50.92 SS G_CDS: 0.84 Total: -50.08 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: 0.07 Total: -11.27 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.79 -8.86 -40.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781825457.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.344 kcal (2) G-P(sol) polarization free energy of solvation -31.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.655 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.74 seconds