Wall clock time and date at job start Sat Apr 11 2020 06:27:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86807 * 120.00047 * 2 1 4 4 H 1.48494 * 109.47052 * 239.99926 * 3 2 1 5 5 H 1.48500 * 109.47055 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47106 * 119.99366 * 3 2 1 7 7 C 1.37875 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99720 * 175.14336 * 7 2 1 9 9 C 1.50694 * 120.00314 * 355.42420 * 7 2 1 10 10 C 1.52992 * 115.55114 * 274.92789 * 9 7 2 11 11 N 1.46495 * 109.47269 * 294.81128 * 10 9 7 12 12 C 1.34782 * 120.00258 * 184.79147 * 11 10 9 13 13 O 1.21582 * 119.99693 * 0.02562 * 12 11 10 14 14 N 1.34776 * 120.00034 * 180.02562 * 12 11 10 15 15 C 1.46497 * 120.00194 * 180.02562 * 14 12 11 16 16 C 1.50699 * 109.47293 * 180.02562 * 15 14 12 17 17 C 1.35367 * 126.72670 * 94.71369 * 16 15 14 18 18 N 1.36120 * 106.04578 * 179.85119 * 17 16 15 19 19 C 1.40247 * 125.94422 * 180.18056 * 18 17 16 20 20 C 1.38824 * 120.06288 * 0.02562 * 19 18 17 21 21 C 1.38122 * 119.93070 * 179.74049 * 20 19 18 22 22 C 1.38279 * 120.07086 * 0.55475 * 21 20 19 23 23 C 1.38281 * 120.12469 * 359.69938 * 22 21 20 24 24 C 1.38121 * 120.06290 * 0.02562 * 23 22 21 25 25 N 1.28731 * 108.11577 * 0.41597 * 18 17 16 26 26 N 1.28599 * 110.23213 * 359.73358 * 25 18 17 27 27 C 1.53003 * 117.49968 * 129.25534 * 9 7 2 28 28 C 1.53006 * 117.49603 * 60.59599 * 9 7 2 29 29 H 0.97001 * 119.99960 * 5.00103 * 1 2 3 30 30 H 1.09001 * 109.47339 * 54.81686 * 10 9 7 31 31 H 1.09007 * 109.46904 * 174.81223 * 10 9 7 32 32 H 0.96999 * 120.00105 * 4.80424 * 11 10 9 33 33 H 0.97004 * 120.00199 * 0.02562 * 14 12 11 34 34 H 1.09007 * 109.47147 * 300.00790 * 15 14 12 35 35 H 1.09003 * 109.46836 * 59.99708 * 15 14 12 36 36 H 1.07996 * 126.98060 * 359.97128 * 17 16 15 37 37 H 1.07994 * 120.03508 * 0.02562 * 20 19 18 38 38 H 1.08007 * 119.96749 * 180.27647 * 21 20 19 39 39 H 1.07996 * 119.93728 * 179.72103 * 22 21 20 40 40 H 1.07996 * 119.96435 * 180.02562 * 23 22 21 41 41 H 1.08007 * 120.02853 * 180.02562 * 24 23 22 42 42 H 1.09003 * 117.50034 * 359.97438 * 27 9 7 43 43 H 1.09002 * 117.49971 * 145.02730 * 27 9 7 44 44 H 1.08996 * 117.49810 * 214.97781 * 28 9 7 45 45 H 1.08995 * 117.50078 * 359.97438 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0044 -1.1940 0.0005 8 1 3.0816 -1.1957 -0.0787 9 6 1.2546 -2.4970 0.1052 10 6 0.9188 -2.9527 1.5266 11 7 2.1578 -3.2464 2.2508 12 6 2.1052 -3.7590 3.4962 13 8 1.0293 -3.9781 4.0184 14 7 3.2451 -4.0287 4.1627 15 6 3.1879 -4.5864 5.5162 16 6 4.5880 -4.7931 6.0340 17 6 5.3024 -3.9360 6.8004 18 7 6.5010 -4.5411 7.0244 19 6 7.5605 -4.0153 7.7780 20 6 7.4370 -2.7686 8.3761 21 6 8.4801 -2.2558 9.1221 22 6 9.6509 -2.9777 9.2642 23 6 9.7787 -4.2175 8.6652 24 6 8.7368 -4.7380 7.9227 25 7 6.4947 -5.6777 6.4200 26 7 5.3706 -5.8570 5.8216 27 6 1.5730 -3.5803 -0.9273 28 6 0.2453 -2.8218 -0.9979 29 1 -0.4850 0.8369 -0.0732 30 1 0.3749 -2.1616 2.0428 31 1 0.3013 -3.8500 1.4840 32 1 3.0162 -3.0718 1.8342 33 1 4.1035 -3.8536 3.7463 34 1 2.6567 -3.8961 6.1715 35 1 2.6637 -5.5419 5.4936 36 1 4.9850 -2.9693 7.1625 37 1 6.5245 -2.2023 8.2619 38 1 8.3830 -1.2878 9.5914 39 1 10.4669 -2.5727 9.8442 40 1 10.6941 -4.7794 8.7782 41 1 8.8371 -5.7066 7.4555 42 1 2.3246 -3.3504 -1.6826 43 1 1.5428 -4.6177 -0.5940 44 1 -0.6578 -3.3605 -0.7110 45 1 0.1233 -2.0928 -1.7990 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797471873.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:27:55 Heat of formation + Delta-G solvation = 129.661198 kcal Electronic energy + Delta-G solvation = -27676.586395 eV Core-core repulsion = 23697.589333 eV Total energy + Delta-G solvation = -3978.997062 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 6.38 seconds Orbital eigenvalues (eV) -43.82477 -39.84542 -39.34549 -36.78605 -35.49759 -34.35699 -33.23315 -32.07988 -31.92999 -31.19715 -30.36530 -27.33026 -25.80310 -24.79129 -24.75123 -23.43322 -21.88325 -21.19288 -21.07163 -20.29150 -19.35958 -18.98633 -17.73895 -16.95436 -16.82089 -16.32340 -15.83842 -15.57775 -15.40054 -15.08430 -14.73137 -14.60109 -14.13086 -14.11479 -14.00306 -13.66321 -13.45038 -13.10374 -12.97131 -12.58009 -12.35922 -12.10170 -11.74770 -11.67108 -11.54442 -11.40246 -11.20335 -10.96491 -10.94254 -10.53985 -10.20069 -9.92045 -9.71079 -9.62176 -9.42482 -9.11658 -9.01608 -8.87022 -8.46198 -8.20971 -7.96045 -6.05526 -4.15101 0.09103 0.64175 1.51124 1.80591 2.03010 3.09586 3.26576 3.32678 3.33496 3.37288 3.79059 3.82280 4.02128 4.19271 4.35631 4.40835 4.45166 4.60952 4.67294 4.72474 4.87415 4.88938 5.06807 5.22199 5.30124 5.38039 5.45282 5.63658 5.65368 5.77087 5.79167 5.87640 6.01303 6.07324 6.39052 6.39799 6.51769 6.63336 6.70010 6.75477 6.88158 7.15831 7.34131 7.44747 7.47698 7.63922 7.82682 8.08243 8.36729 8.66145 8.85847 9.20123 9.51489 11.01658 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012872 B = 0.002164 C = 0.001960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2174.772752 B =12935.711914 C =14280.943006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.073 3.927 3 Si 0.891 3.109 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.499 4.499 8 H 0.058 0.942 9 C 0.023 3.977 10 C 0.182 3.818 11 N -0.720 5.720 12 C 0.701 3.299 13 O -0.603 6.603 14 N -0.750 5.750 15 C 0.230 3.770 16 C -0.026 4.026 17 C -0.026 4.026 18 N -0.246 5.246 19 C 0.123 3.877 20 C -0.117 4.117 21 C -0.098 4.098 22 C -0.112 4.112 23 C -0.100 4.100 24 C -0.101 4.101 25 N -0.077 5.077 26 N -0.240 5.240 27 C -0.211 4.211 28 C -0.141 4.141 29 H 0.262 0.738 30 H 0.065 0.935 31 H 0.039 0.961 32 H 0.397 0.603 33 H 0.395 0.605 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.198 0.802 37 H 0.137 0.863 38 H 0.138 0.862 39 H 0.133 0.867 40 H 0.137 0.863 41 H 0.143 0.857 42 H 0.077 0.923 43 H 0.065 0.935 44 H 0.064 0.936 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.601 -5.068 19.327 27.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.131 4.131 3 Si 0.718 3.282 4 H -0.204 1.204 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.536 4.536 8 H 0.076 0.924 9 C 0.022 3.978 10 C 0.059 3.941 11 N -0.372 5.372 12 C 0.401 3.599 13 O -0.482 6.482 14 N -0.408 5.408 15 C 0.104 3.896 16 C -0.163 4.163 17 C -0.175 4.175 18 N -0.033 5.033 19 C 0.032 3.968 20 C -0.138 4.138 21 C -0.116 4.116 22 C -0.131 4.131 23 C -0.119 4.119 24 C -0.121 4.121 25 N -0.056 5.056 26 N -0.108 5.108 27 C -0.248 4.248 28 C -0.180 4.180 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.057 0.943 32 H 0.230 0.770 33 H 0.228 0.772 34 H 0.103 0.897 35 H 0.103 0.897 36 H 0.215 0.785 37 H 0.155 0.845 38 H 0.156 0.844 39 H 0.151 0.849 40 H 0.155 0.845 41 H 0.161 0.839 42 H 0.095 0.905 43 H 0.083 0.917 44 H 0.082 0.918 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 18.127 -6.438 19.500 27.391 hybrid contribution 0.725 2.177 -0.158 2.300 sum 18.852 -4.261 19.342 27.344 Atomic orbital electron populations 1.69978 1.05840 1.26924 1.48293 1.24984 0.94818 0.98892 0.94402 0.86694 0.79636 0.83287 0.78541 1.20350 1.21291 1.20246 1.20298 0.92527 0.88620 1.52191 0.92361 1.19057 0.99412 0.93276 0.86031 1.20857 0.83217 0.97749 0.92294 1.45152 1.11328 1.66621 1.14082 1.15958 0.83616 0.78734 0.81614 1.90877 1.27728 1.60673 1.68950 1.45041 1.08023 1.70996 1.16744 1.19124 0.87249 1.00314 0.82949 1.22062 0.99209 0.92369 1.02650 1.23655 0.86150 1.02476 1.05213 1.44691 1.11370 1.13639 1.33556 1.17707 0.87158 0.94896 0.97054 1.20987 1.00978 0.93498 0.98354 1.21083 0.92531 1.00322 0.97709 1.21401 0.97960 0.94674 0.99040 1.21150 0.98517 0.95882 0.96309 1.21040 0.91171 1.00756 0.99164 1.78383 1.17384 1.00767 1.09019 1.75137 0.97387 1.22131 1.16175 1.23016 1.00652 0.95669 1.05463 1.22464 0.90827 1.01301 1.03373 0.92832 0.91683 0.94311 0.76970 0.77175 0.89720 0.89683 0.78545 0.84544 0.84419 0.84907 0.84489 0.83902 0.90480 0.91657 0.91768 0.89548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.23 12.65 55.43 0.70 -23.53 16 2 C 0.07 1.94 5.43 -17.82 -0.10 1.84 16 3 Si 0.89 20.49 29.54 -169.99 -5.02 15.47 16 4 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 7 C -0.50 -12.83 8.59 -34.44 -0.30 -13.12 16 8 H 0.06 1.47 7.82 -52.48 -0.41 1.06 16 9 C 0.02 0.55 1.47 -155.66 -0.23 0.32 16 10 C 0.18 4.19 5.50 -4.05 -0.02 4.17 16 11 N -0.72 -14.22 5.48 -65.23 -0.36 -14.58 16 12 C 0.70 13.43 8.57 -86.91 -0.74 12.68 16 13 O -0.60 -13.70 16.34 5.29 0.09 -13.61 16 14 N -0.75 -10.99 5.55 -66.41 -0.37 -11.36 16 15 C 0.23 2.94 6.23 -5.20 -0.03 2.90 16 16 C -0.03 -0.31 6.61 -82.77 -0.55 -0.86 16 17 C -0.03 -0.25 10.85 -16.67 -0.18 -0.43 16 18 N -0.25 -2.58 3.56 -10.47 -0.04 -2.61 16 19 C 0.12 1.02 6.68 -83.57 -0.56 0.46 16 20 C -0.12 -0.71 9.46 -39.41 -0.37 -1.09 16 21 C -0.10 -0.45 10.04 -39.61 -0.40 -0.84 16 22 C -0.11 -0.47 10.04 -39.55 -0.40 -0.87 16 23 C -0.10 -0.50 10.04 -39.61 -0.40 -0.90 16 24 C -0.10 -0.74 9.62 -39.41 -0.38 -1.12 16 25 N -0.08 -1.00 12.42 60.35 0.75 -0.25 16 26 N -0.24 -3.36 12.39 33.29 0.41 -2.95 16 27 C -0.21 -4.47 9.96 -26.69 -0.27 -4.74 16 28 C -0.14 -3.28 9.14 -26.69 -0.24 -3.52 16 29 H 0.26 6.99 8.32 -40.82 -0.34 6.65 16 30 H 0.06 1.69 8.14 -51.93 -0.42 1.27 16 31 H 0.04 0.89 8.09 -51.92 -0.42 0.47 16 32 H 0.40 7.21 8.34 -40.82 -0.34 6.87 16 33 H 0.40 5.13 8.48 -40.82 -0.35 4.78 16 34 H 0.08 1.00 8.14 -51.92 -0.42 0.57 16 35 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 36 H 0.20 1.17 7.11 -52.49 -0.37 0.80 16 37 H 0.14 0.60 6.77 -52.49 -0.36 0.24 16 38 H 0.14 0.32 8.06 -52.48 -0.42 -0.10 16 39 H 0.13 0.25 8.06 -52.49 -0.42 -0.17 16 40 H 0.14 0.37 8.06 -52.49 -0.42 -0.05 16 41 H 0.14 1.06 7.69 -52.48 -0.40 0.66 16 42 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 43 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 44 H 0.06 1.42 8.14 -51.93 -0.42 0.99 16 45 H 0.09 2.14 8.14 -51.93 -0.42 1.71 16 LS Contribution 391.28 15.07 5.90 5.90 Total: -1.00 -33.06 391.28 -9.11 -42.17 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: -6.01 Total: 10.48 kcal Atomic # 6 Polarization: 0.04 SS G_CDS: -5.16 Total: -5.12 kcal Atomic # 7 Polarization: -56.38 SS G_CDS: 1.10 Total: -55.29 kcal Atomic # 8 Polarization: -13.70 SS G_CDS: 0.09 Total: -13.61 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.06 -9.11 -42.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797471873.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.833 kcal (2) G-P(sol) polarization free energy of solvation -33.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.172 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.38 seconds