Wall clock time and date at job start Sat Apr 11 2020 06:27:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86807 * 120.00047 * 2 1 4 4 H 1.48494 * 109.47052 * 239.99926 * 3 2 1 5 5 H 1.48500 * 109.47055 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47106 * 119.99366 * 3 2 1 7 7 C 1.37875 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99720 * 175.14336 * 7 2 1 9 9 C 1.50694 * 120.00314 * 355.42420 * 7 2 1 10 10 C 1.52992 * 115.55114 * 274.92789 * 9 7 2 11 11 N 1.46495 * 109.47269 * 294.81128 * 10 9 7 12 12 C 1.34782 * 120.00258 * 184.79147 * 11 10 9 13 13 O 1.21582 * 119.99693 * 0.02562 * 12 11 10 14 14 N 1.34776 * 120.00034 * 180.02562 * 12 11 10 15 15 C 1.46497 * 120.00194 * 180.02562 * 14 12 11 16 16 C 1.50699 * 109.47293 * 180.02562 * 15 14 12 17 17 C 1.35367 * 126.72670 * 94.71369 * 16 15 14 18 18 N 1.36120 * 106.04578 * 179.85119 * 17 16 15 19 19 C 1.40247 * 125.94422 * 180.18056 * 18 17 16 20 20 C 1.38824 * 120.06288 * 0.02562 * 19 18 17 21 21 C 1.38122 * 119.93070 * 179.74049 * 20 19 18 22 22 C 1.38279 * 120.07086 * 0.55475 * 21 20 19 23 23 C 1.38281 * 120.12469 * 359.69938 * 22 21 20 24 24 C 1.38121 * 120.06290 * 0.02562 * 23 22 21 25 25 N 1.28731 * 108.11577 * 0.41597 * 18 17 16 26 26 N 1.28599 * 110.23213 * 359.73358 * 25 18 17 27 27 C 1.53003 * 117.49968 * 129.25534 * 9 7 2 28 28 C 1.53006 * 117.49603 * 60.59599 * 9 7 2 29 29 H 0.97001 * 119.99960 * 5.00103 * 1 2 3 30 30 H 1.09001 * 109.47339 * 54.81686 * 10 9 7 31 31 H 1.09007 * 109.46904 * 174.81223 * 10 9 7 32 32 H 0.96999 * 120.00105 * 4.80424 * 11 10 9 33 33 H 0.97004 * 120.00199 * 0.02562 * 14 12 11 34 34 H 1.09007 * 109.47147 * 300.00790 * 15 14 12 35 35 H 1.09003 * 109.46836 * 59.99708 * 15 14 12 36 36 H 1.07996 * 126.98060 * 359.97128 * 17 16 15 37 37 H 1.07994 * 120.03508 * 0.02562 * 20 19 18 38 38 H 1.08007 * 119.96749 * 180.27647 * 21 20 19 39 39 H 1.07996 * 119.93728 * 179.72103 * 22 21 20 40 40 H 1.07996 * 119.96435 * 180.02562 * 23 22 21 41 41 H 1.08007 * 120.02853 * 180.02562 * 24 23 22 42 42 H 1.09003 * 117.50034 * 359.97438 * 27 9 7 43 43 H 1.09002 * 117.49971 * 145.02730 * 27 9 7 44 44 H 1.08996 * 117.49810 * 214.97781 * 28 9 7 45 45 H 1.08995 * 117.50078 * 359.97438 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0044 -1.1940 0.0005 8 1 3.0816 -1.1957 -0.0787 9 6 1.2546 -2.4970 0.1052 10 6 0.9188 -2.9527 1.5266 11 7 2.1578 -3.2464 2.2508 12 6 2.1052 -3.7590 3.4962 13 8 1.0293 -3.9781 4.0184 14 7 3.2451 -4.0287 4.1627 15 6 3.1879 -4.5864 5.5162 16 6 4.5880 -4.7931 6.0340 17 6 5.3024 -3.9360 6.8004 18 7 6.5010 -4.5411 7.0244 19 6 7.5605 -4.0153 7.7780 20 6 7.4370 -2.7686 8.3761 21 6 8.4801 -2.2558 9.1221 22 6 9.6509 -2.9777 9.2642 23 6 9.7787 -4.2175 8.6652 24 6 8.7368 -4.7380 7.9227 25 7 6.4947 -5.6777 6.4200 26 7 5.3706 -5.8570 5.8216 27 6 1.5730 -3.5803 -0.9273 28 6 0.2453 -2.8218 -0.9979 29 1 -0.4850 0.8369 -0.0732 30 1 0.3749 -2.1616 2.0428 31 1 0.3013 -3.8500 1.4840 32 1 3.0162 -3.0718 1.8342 33 1 4.1035 -3.8536 3.7463 34 1 2.6567 -3.8961 6.1715 35 1 2.6637 -5.5419 5.4936 36 1 4.9850 -2.9693 7.1625 37 1 6.5245 -2.2023 8.2619 38 1 8.3830 -1.2878 9.5914 39 1 10.4669 -2.5727 9.8442 40 1 10.6941 -4.7794 8.7782 41 1 8.8371 -5.7066 7.4555 42 1 2.3246 -3.3504 -1.6826 43 1 1.5428 -4.6177 -0.5940 44 1 -0.6578 -3.3605 -0.7110 45 1 0.1233 -2.0928 -1.7990 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000797471873.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:27:53 Heat of formation + Delta-G solvation = 108.224778 kcal Electronic energy + Delta-G solvation = -27677.515948 eV Core-core repulsion = 23697.589333 eV Total energy + Delta-G solvation = -3979.926615 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -44.64869 -40.92078 -40.25911 -38.56103 -36.49984 -35.34081 -34.91304 -33.92805 -32.79455 -31.88446 -30.92424 -28.67221 -27.57245 -26.39258 -25.41580 -24.02596 -22.92943 -22.52906 -21.87215 -21.79091 -21.21432 -19.72976 -19.14430 -18.12178 -17.75094 -17.28088 -17.00376 -16.73461 -16.53772 -16.30752 -15.98653 -15.71260 -15.48856 -15.16849 -15.03231 -14.53763 -14.46576 -14.35993 -14.16581 -14.00416 -13.55540 -13.39729 -12.95304 -12.89569 -12.77653 -12.70331 -12.36835 -12.18573 -12.12767 -12.02633 -12.00195 -11.47687 -11.28350 -10.91596 -10.57075 -10.41939 -10.29515 -10.10446 -10.01805 -9.66622 -9.59227 -8.06020 -6.20380 -0.47524 0.25400 0.85148 1.06654 1.15002 1.45345 1.46213 1.53075 2.02702 2.25269 2.44775 2.68000 3.01241 3.21451 3.37966 3.44081 3.66015 3.69145 3.75869 3.93162 4.09374 4.18508 4.27113 4.32462 4.36571 4.52572 4.58614 4.59239 4.69287 4.74886 4.78270 4.85057 4.94928 5.01649 5.05478 5.25435 5.28564 5.31481 5.43219 5.44026 5.51861 5.58590 5.64868 5.74592 5.81219 5.88351 6.11292 6.39877 6.86344 7.20508 7.22312 7.48833 7.67412 9.00812 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012872 B = 0.002164 C = 0.001960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2174.772752 B =12935.711914 C =14280.943006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.024 3.976 3 Si 0.951 3.049 4 H -0.272 1.272 5 H -0.291 1.291 6 H -0.270 1.270 7 C -0.504 4.504 8 H 0.062 0.938 9 C 0.002 3.998 10 C 0.200 3.800 11 N -0.716 5.716 12 C 0.702 3.298 13 O -0.640 6.640 14 N -0.732 5.732 15 C 0.234 3.766 16 C -0.040 4.040 17 C -0.010 4.010 18 N -0.238 5.238 19 C 0.086 3.914 20 C -0.119 4.119 21 C -0.099 4.099 22 C -0.105 4.105 23 C -0.103 4.103 24 C -0.118 4.118 25 N -0.104 5.104 26 N -0.276 5.276 27 C -0.180 4.180 28 C -0.152 4.152 29 H 0.259 0.741 30 H 0.027 0.973 31 H 0.035 0.965 32 H 0.406 0.594 33 H 0.406 0.594 34 H 0.099 0.901 35 H 0.072 0.928 36 H 0.235 0.765 37 H 0.154 0.846 38 H 0.165 0.835 39 H 0.162 0.838 40 H 0.158 0.842 41 H 0.130 0.870 42 H 0.083 0.917 43 H 0.085 0.915 44 H 0.070 0.930 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.210 -3.767 20.902 30.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.177 4.177 3 Si 0.777 3.223 4 H -0.197 1.197 5 H -0.217 1.217 6 H -0.195 1.195 7 C -0.541 4.541 8 H 0.080 0.920 9 C 0.001 3.999 10 C 0.075 3.925 11 N -0.369 5.369 12 C 0.401 3.599 13 O -0.522 6.522 14 N -0.388 5.388 15 C 0.108 3.892 16 C -0.177 4.177 17 C -0.159 4.159 18 N -0.025 5.025 19 C -0.004 4.004 20 C -0.139 4.139 21 C -0.117 4.117 22 C -0.123 4.123 23 C -0.121 4.121 24 C -0.138 4.138 25 N -0.082 5.082 26 N -0.143 5.143 27 C -0.217 4.217 28 C -0.190 4.190 29 H 0.068 0.932 30 H 0.045 0.955 31 H 0.054 0.946 32 H 0.241 0.759 33 H 0.241 0.759 34 H 0.117 0.883 35 H 0.091 0.909 36 H 0.251 0.749 37 H 0.171 0.829 38 H 0.183 0.817 39 H 0.179 0.821 40 H 0.175 0.825 41 H 0.148 0.852 42 H 0.102 0.898 43 H 0.104 0.896 44 H 0.088 0.912 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 20.828 -5.165 21.087 30.085 hybrid contribution 0.044 1.783 -0.533 1.861 sum 20.872 -3.383 20.554 29.488 Atomic orbital electron populations 1.70108 1.07217 1.27361 1.49748 1.25710 0.95505 1.02059 0.94418 0.85729 0.78351 0.79406 0.78790 1.19689 1.21721 1.19547 1.20601 0.92841 0.89508 1.51185 0.91972 1.19103 1.00201 0.93922 0.86628 1.20416 0.84103 0.96155 0.91837 1.44933 1.10689 1.66899 1.14401 1.16036 0.84106 0.78393 0.81325 1.90852 1.29518 1.62168 1.69685 1.44892 1.07111 1.69655 1.17190 1.19139 0.88153 0.99911 0.81949 1.21907 0.98894 0.92864 1.04075 1.24157 0.85232 1.03035 1.03486 1.44887 1.12033 1.12888 1.32642 1.18100 0.87146 0.96371 0.98759 1.21284 1.02209 0.92568 0.97840 1.21487 0.91992 1.01298 0.96924 1.21822 0.98621 0.93909 0.97947 1.21443 0.98542 0.96543 0.95602 1.21140 0.91942 1.00622 1.00086 1.78319 1.17290 1.02304 1.10273 1.75074 0.98193 1.23527 1.17462 1.22991 0.99007 0.95929 1.03751 1.22388 0.92065 1.01720 1.02817 0.93196 0.95468 0.94637 0.75906 0.75931 0.88284 0.90937 0.74866 0.82880 0.81717 0.82052 0.82475 0.85197 0.89800 0.89612 0.91191 0.91611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.06 12.65 21.45 0.27 -50.79 16 2 C 0.02 1.26 5.43 84.65 0.46 1.72 16 3 Si 0.95 41.82 29.54 68.60 2.03 43.85 16 4 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 5 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 6 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 7 C -0.50 -25.68 8.59 25.60 0.22 -25.46 16 8 H 0.06 3.05 7.82 -2.91 -0.02 3.03 16 9 C 0.00 0.11 1.47 -52.93 -0.08 0.03 16 10 C 0.20 9.27 5.50 86.38 0.48 9.74 16 11 N -0.72 -28.01 5.48 -478.55 -2.62 -30.64 16 12 C 0.70 26.65 8.57 179.05 1.53 28.18 16 13 O -0.64 -29.29 16.34 -3.97 -0.06 -29.35 16 14 N -0.73 -20.82 5.55 -482.29 -2.68 -23.50 16 15 C 0.23 5.83 6.23 85.63 0.53 6.37 16 16 C -0.04 -0.92 6.61 41.60 0.28 -0.65 16 17 C -0.01 -0.17 10.85 83.36 0.90 0.74 16 18 N -0.24 -4.83 3.56 -187.05 -0.67 -5.49 16 19 C 0.09 1.34 6.68 38.07 0.25 1.60 16 20 C -0.12 -1.14 9.46 22.38 0.21 -0.92 16 21 C -0.10 -0.55 10.04 22.25 0.22 -0.33 16 22 C -0.10 -0.53 10.04 22.29 0.22 -0.30 16 23 C -0.10 -0.82 10.04 22.25 0.22 -0.60 16 24 C -0.12 -1.66 9.62 22.38 0.22 -1.44 16 25 N -0.10 -2.75 12.42 37.02 0.46 -2.29 16 26 N -0.28 -7.82 12.39 -48.59 -0.60 -8.42 16 27 C -0.18 -7.36 9.96 30.62 0.30 -7.05 16 28 C -0.15 -7.04 9.14 30.62 0.28 -6.77 16 29 H 0.26 14.09 8.32 -92.71 -0.77 13.32 16 30 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.04 1.65 8.09 -2.38 -0.02 1.63 16 32 H 0.41 14.31 8.34 -92.71 -0.77 13.53 16 33 H 0.41 10.03 8.48 -92.71 -0.79 9.24 16 34 H 0.10 2.21 8.14 -2.38 -0.02 2.19 16 35 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.24 2.02 7.11 -2.91 -0.02 2.00 16 37 H 0.15 0.83 6.77 -2.91 -0.02 0.81 16 38 H 0.17 0.02 8.06 -2.91 -0.02 0.00 16 39 H 0.16 -0.11 8.06 -2.91 -0.02 -0.13 16 40 H 0.16 0.51 8.06 -2.91 -0.02 0.49 16 41 H 0.13 2.06 7.69 -2.91 -0.02 2.04 16 42 H 0.08 3.33 8.14 -2.39 -0.02 3.31 16 43 H 0.09 3.17 8.14 -2.39 -0.02 3.16 16 44 H 0.07 3.11 8.14 -2.39 -0.02 3.09 16 45 H 0.07 3.30 8.14 -2.39 -0.02 3.28 16 Total: -1.00 -73.11 391.28 1.86 -71.24 By element: Atomic # 1 Polarization: 31.05 SS G_CDS: -0.52 Total: 30.53 kcal Atomic # 6 Polarization: -1.41 SS G_CDS: 6.26 Total: 4.85 kcal Atomic # 7 Polarization: -115.28 SS G_CDS: -5.84 Total: -121.12 kcal Atomic # 8 Polarization: -29.29 SS G_CDS: -0.06 Total: -29.35 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 2.03 Total: 43.85 kcal Total: -73.11 1.86 -71.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797471873.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.470 kcal (2) G-P(sol) polarization free energy of solvation -73.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.245 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds