Wall clock time and date at job start Sat Apr 11 2020 06:28:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 119.99672 * 2 1 4 4 H 1.48505 * 109.47206 * 270.00026 * 3 2 1 5 5 H 1.48495 * 109.47331 * 29.99950 * 3 2 1 6 6 H 1.48498 * 109.47418 * 150.00370 * 3 2 1 7 7 C 1.37875 * 120.00542 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00352 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99783 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.52309 * 60.08291 * 9 7 2 11 11 C 1.53043 * 109.49954 * 180.16165 * 9 7 2 12 12 C 1.53040 * 109.53623 * 181.31698 * 11 9 7 13 13 C 1.53617 * 109.24488 * 298.51041 * 12 11 9 14 14 N 1.46932 * 108.54402 * 54.85915 * 13 12 11 15 15 C 1.34777 * 120.63170 * 126.36700 * 14 13 12 16 16 O 1.21592 * 119.99997 * 174.68277 * 15 14 13 17 17 N 1.34778 * 120.00019 * 354.68108 * 15 14 13 18 18 C 1.40208 * 119.99985 * 185.19341 * 17 15 14 19 19 C 1.39956 * 126.71826 * 359.97438 * 18 17 15 20 20 N 1.30946 * 108.23819 * 179.97438 * 19 18 17 21 21 N 1.28700 * 109.71505 * 0.02562 * 20 19 18 22 22 C 1.40156 * 125.66268 * 179.97438 * 21 20 19 23 23 C 1.38856 * 120.06693 * 179.69257 * 22 21 20 24 24 C 1.38112 * 119.93110 * 179.78966 * 23 22 21 25 25 C 1.38283 * 120.06797 * 0.46796 * 24 23 22 26 26 C 1.38284 * 120.13788 * 359.78901 * 25 24 23 27 27 C 1.38115 * 120.06419 * 359.97438 * 26 25 24 28 28 N 1.31877 * 126.71463 * 179.68738 * 18 17 15 29 29 C 1.46924 * 118.73642 * 306.09775 * 14 13 12 30 30 H 0.96995 * 120.00445 * 359.97438 * 1 2 3 31 31 H 1.09000 * 109.46077 * 301.34041 * 11 9 7 32 32 H 1.09004 * 109.45647 * 61.29666 * 11 9 7 33 33 H 1.09000 * 109.49835 * 58.59510 * 12 11 9 34 34 H 1.09001 * 109.49153 * 178.65409 * 12 11 9 35 35 H 1.09005 * 109.74240 * 295.12078 * 13 12 11 36 36 H 1.09001 * 109.66549 * 174.55126 * 13 12 11 37 37 H 0.97007 * 119.99711 * 5.18751 * 17 15 14 38 38 H 1.08000 * 125.88080 * 0.02562 * 19 18 17 39 39 H 1.08000 * 120.03333 * 0.02622 * 23 22 21 40 40 H 1.08003 * 119.96436 * 180.22943 * 24 23 22 41 41 H 1.08002 * 119.93043 * 179.75967 * 25 24 23 42 42 H 1.08000 * 119.96674 * 179.97438 * 26 25 24 43 43 H 1.08001 * 120.02921 * 179.97438 * 27 26 25 44 44 H 1.09003 * 109.58800 * 173.64663 * 29 14 13 45 45 H 1.09007 * 109.58281 * 293.92333 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.6999 7 6 2.0047 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 1 0.6250 -2.5582 -0.8907 11 6 2.2452 -3.6628 0.0029 12 6 1.4813 -4.9885 -0.0303 13 6 0.6040 -5.0988 1.2259 14 7 -0.2554 -3.9095 1.3017 15 6 -1.5920 -4.0345 1.4215 16 8 -2.2831 -3.0468 1.5804 17 7 -2.1624 -5.2543 1.3652 18 6 -3.5591 -5.3763 1.3804 19 6 -4.4895 -4.3332 1.4510 20 7 -5.6909 -4.8542 1.4410 21 7 -5.6074 -6.1366 1.3709 22 6 -6.6905 -7.0255 1.3399 23 6 -6.4659 -8.3932 1.2565 24 6 -7.5353 -9.2669 1.2306 25 6 -8.8288 -8.7803 1.2778 26 6 -9.0559 -7.4184 1.3555 27 6 -7.9905 -6.5400 1.3867 28 7 -4.2533 -6.4963 1.3255 29 6 0.3706 -2.5813 1.2503 30 1 -0.4850 0.8400 0.0004 31 1 2.8893 -3.5928 -0.8736 32 1 2.8545 -3.6172 0.9056 33 1 0.8530 -5.0242 -0.9202 34 1 2.1902 -5.8163 -0.0519 35 1 1.2356 -5.1504 2.1128 36 1 -0.0153 -5.9937 1.1633 37 1 -1.6067 -6.0477 1.3142 38 1 -4.2568 -3.2799 1.5037 39 1 -5.4560 -8.7736 1.2159 40 1 -7.3611 -10.3310 1.1695 41 1 -9.6634 -9.4653 1.2534 42 1 -10.0673 -7.0414 1.3918 43 1 -8.1686 -5.4764 1.4469 44 1 -0.4026 -1.8144 1.2039 45 1 0.9816 -2.4306 2.1404 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000822285766.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:28:50 Heat of formation + Delta-G solvation = 125.713781 kcal Electronic energy + Delta-G solvation = -28710.921537 eV Core-core repulsion = 24731.753302 eV Total energy + Delta-G solvation = -3979.168235 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 2.70 seconds Orbital eigenvalues (eV) -42.55907 -40.14591 -39.30394 -37.18713 -35.13920 -33.66548 -32.97121 -32.03850 -31.70295 -31.04877 -29.82929 -28.98449 -25.22890 -25.03211 -24.06163 -23.24780 -22.01025 -21.75444 -21.40888 -20.11805 -19.06001 -18.18215 -17.82320 -16.88842 -16.40792 -16.32332 -16.21004 -15.29694 -15.04293 -14.97786 -14.65191 -14.37085 -14.19293 -13.90517 -13.76447 -13.64533 -13.26138 -12.92525 -12.68288 -12.45461 -12.10968 -12.04626 -11.60650 -11.55383 -11.49892 -11.07167 -10.98663 -10.82112 -10.57500 -10.50056 -10.30233 -10.21566 -9.99450 -9.73855 -9.36427 -9.33827 -9.19591 -9.06500 -8.49163 -8.15499 -7.82218 -6.04852 -4.13576 0.52563 1.00952 1.73916 1.83753 2.51230 2.77053 3.28876 3.36707 3.38372 3.47956 3.58246 3.96555 4.13797 4.39752 4.57298 4.68410 4.78929 4.90310 5.02238 5.08667 5.24944 5.26734 5.26986 5.34280 5.46991 5.61737 5.68342 5.85470 5.93841 6.04192 6.04406 6.06308 6.15631 6.21471 6.38524 6.44139 6.54407 6.61735 6.67653 6.85787 6.89083 6.94391 7.13549 7.21630 7.61710 7.80694 7.93621 8.02390 8.22202 8.32390 8.79116 8.90748 9.52508 11.00578 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.021796 B = 0.002247 C = 0.002073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.332934 B =12460.225682 C =13502.094225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.063 3.937 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.521 4.521 8 H 0.059 0.941 9 C 0.039 3.961 10 H 0.030 0.970 11 C -0.111 4.111 12 C -0.134 4.134 13 C 0.110 3.890 14 N -0.608 5.608 15 C 0.707 3.293 16 O -0.559 6.559 17 N -0.645 5.645 18 C 0.312 3.688 19 C -0.014 4.014 20 N -0.237 5.237 21 N -0.187 5.187 22 C 0.180 3.820 23 C -0.119 4.119 24 C -0.099 4.099 25 C -0.130 4.130 26 C -0.097 4.097 27 C -0.121 4.121 28 N -0.320 5.320 29 C 0.127 3.873 30 H 0.265 0.735 31 H 0.053 0.947 32 H 0.051 0.949 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.069 0.931 36 H 0.061 0.939 37 H 0.412 0.588 38 H 0.224 0.776 39 H 0.139 0.861 40 H 0.132 0.868 41 H 0.128 0.872 42 H 0.133 0.867 43 H 0.140 0.860 44 H 0.126 0.874 45 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.657 -18.465 3.264 22.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.140 4.140 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.560 4.560 8 H 0.077 0.923 9 C 0.020 3.980 10 H 0.048 0.952 11 C -0.149 4.149 12 C -0.172 4.172 13 C -0.014 4.014 14 N -0.344 5.344 15 C 0.409 3.591 16 O -0.433 6.433 17 N -0.301 5.301 18 C 0.049 3.951 19 C -0.204 4.204 20 N -0.072 5.072 21 N -0.077 5.077 22 C 0.088 3.912 23 C -0.140 4.140 24 C -0.117 4.117 25 C -0.149 4.149 26 C -0.116 4.116 27 C -0.142 4.142 28 N -0.159 5.159 29 C 0.007 3.993 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.088 0.912 36 H 0.079 0.921 37 H 0.251 0.749 38 H 0.240 0.760 39 H 0.157 0.843 40 H 0.150 0.850 41 H 0.146 0.854 42 H 0.151 0.849 43 H 0.158 0.842 44 H 0.144 0.856 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -13.173 -18.392 3.340 22.868 hybrid contribution 1.659 0.993 -0.057 1.934 sum -11.515 -17.399 3.283 21.121 Atomic orbital electron populations 1.69861 1.05725 1.27009 1.49112 1.25055 0.94910 0.99316 0.94736 0.86580 0.79807 0.83429 0.78114 1.20691 1.21137 1.19909 1.21052 0.92938 0.89969 1.52030 0.92262 1.19004 0.92623 0.92409 0.93967 0.95186 1.21629 0.98571 0.93859 1.00798 1.22029 0.98657 0.99403 0.97109 1.21735 0.93493 0.86873 0.99327 1.47869 1.02477 1.09809 1.74205 1.15747 0.83201 0.81623 0.78571 1.90849 1.61025 1.35863 1.55581 1.42128 1.01198 1.10048 1.76735 1.19825 0.86118 0.91980 0.97144 1.25336 0.84760 1.03133 1.07151 1.73454 1.25872 0.93459 1.14426 1.47539 1.02726 1.01654 1.55744 1.17330 0.83456 0.87790 1.02595 1.20912 1.00975 0.90339 1.01799 1.21026 0.91889 0.99718 0.99099 1.21255 0.97130 0.95610 1.00885 1.21024 0.98601 0.92989 0.98974 1.20949 0.89741 1.01607 1.01938 1.78075 0.88121 1.19644 1.30074 1.22394 0.98565 0.79597 0.98750 0.92526 0.92832 0.93007 0.91975 0.92002 0.91230 0.92105 0.74907 0.75984 0.84346 0.84985 0.85431 0.84900 0.84204 0.85600 0.93550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.75 11.39 55.43 0.63 -24.12 16 2 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 3 Si 0.89 20.71 29.54 -169.99 -5.02 15.69 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 7 C -0.52 -13.53 8.56 -34.44 -0.29 -13.83 16 8 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.04 0.91 2.25 -91.65 -0.21 0.71 16 10 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 11 C -0.11 -2.05 5.10 -26.69 -0.14 -2.19 16 12 C -0.13 -1.96 6.10 -26.39 -0.16 -2.12 16 13 C 0.11 1.53 6.46 -3.49 -0.02 1.50 16 14 N -0.61 -11.25 2.97 -178.23 -0.53 -11.78 16 15 C 0.71 13.43 8.26 -86.92 -0.72 12.71 16 16 O -0.56 -12.49 13.01 5.28 0.07 -12.42 16 17 N -0.65 -9.99 5.37 -15.47 -0.08 -10.08 16 18 C 0.31 5.17 8.18 -153.96 -1.26 3.91 16 19 C -0.01 -0.24 10.85 -17.29 -0.19 -0.43 16 20 N -0.24 -3.90 11.24 30.66 0.34 -3.55 16 21 N -0.19 -2.89 4.44 32.48 0.14 -2.75 16 22 C 0.18 2.30 6.74 -83.60 -0.56 1.74 16 23 C -0.12 -1.26 9.65 -39.40 -0.38 -1.64 16 24 C -0.10 -0.78 10.04 -39.61 -0.40 -1.17 16 25 C -0.13 -0.92 10.04 -39.55 -0.40 -1.32 16 26 C -0.10 -0.77 10.04 -39.61 -0.40 -1.17 16 27 C -0.12 -1.30 9.61 -39.40 -0.38 -1.68 16 28 N -0.32 -5.05 11.97 31.46 0.38 -4.68 16 29 C 0.13 2.87 5.38 -3.71 -0.02 2.85 16 30 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 31 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.06 0.66 5.57 -51.93 -0.29 0.37 16 37 H 0.41 5.10 6.28 -40.82 -0.26 4.85 16 38 H 0.22 4.06 5.99 -52.49 -0.31 3.74 16 39 H 0.14 1.45 7.68 -52.49 -0.40 1.05 16 40 H 0.13 0.70 8.06 -52.48 -0.42 0.27 16 41 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 42 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 43 H 0.14 1.50 7.68 -52.49 -0.40 1.10 16 44 H 0.13 3.35 5.15 -51.93 -0.27 3.09 16 45 H 0.05 1.04 8.14 -51.92 -0.42 0.62 16 LS Contribution 369.41 15.07 5.57 5.57 Total: -1.00 -30.80 369.41 -9.82 -40.62 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: -5.70 Total: 8.04 kcal Atomic # 6 Polarization: 5.08 SS G_CDS: -5.62 Total: -0.54 kcal Atomic # 7 Polarization: -57.84 SS G_CDS: 0.89 Total: -56.96 kcal Atomic # 8 Polarization: -12.49 SS G_CDS: 0.07 Total: -12.42 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -30.80 -9.82 -40.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822285766.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.332 kcal (2) G-P(sol) polarization free energy of solvation -30.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.70 seconds