Wall clock time and date at job start Sat Apr 11 2020 06:28:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 119.99672 * 2 1 4 4 H 1.48505 * 109.47206 * 270.00026 * 3 2 1 5 5 H 1.48495 * 109.47331 * 29.99950 * 3 2 1 6 6 H 1.48498 * 109.47418 * 150.00370 * 3 2 1 7 7 C 1.37875 * 120.00542 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00352 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99783 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.52309 * 60.08291 * 9 7 2 11 11 C 1.53043 * 109.49954 * 180.16165 * 9 7 2 12 12 C 1.53040 * 109.53623 * 181.31698 * 11 9 7 13 13 C 1.53617 * 109.24488 * 298.51041 * 12 11 9 14 14 N 1.46932 * 108.54402 * 54.85915 * 13 12 11 15 15 C 1.34777 * 120.63170 * 126.36700 * 14 13 12 16 16 O 1.21592 * 119.99997 * 174.68277 * 15 14 13 17 17 N 1.34778 * 120.00019 * 354.68108 * 15 14 13 18 18 C 1.40208 * 119.99985 * 185.19341 * 17 15 14 19 19 C 1.39956 * 126.71826 * 359.97438 * 18 17 15 20 20 N 1.30946 * 108.23819 * 179.97438 * 19 18 17 21 21 N 1.28700 * 109.71505 * 0.02562 * 20 19 18 22 22 C 1.40156 * 125.66268 * 179.97438 * 21 20 19 23 23 C 1.38856 * 120.06693 * 179.69257 * 22 21 20 24 24 C 1.38112 * 119.93110 * 179.78966 * 23 22 21 25 25 C 1.38283 * 120.06797 * 0.46796 * 24 23 22 26 26 C 1.38284 * 120.13788 * 359.78901 * 25 24 23 27 27 C 1.38115 * 120.06419 * 359.97438 * 26 25 24 28 28 N 1.31877 * 126.71463 * 179.68738 * 18 17 15 29 29 C 1.46924 * 118.73642 * 306.09775 * 14 13 12 30 30 H 0.96995 * 120.00445 * 359.97438 * 1 2 3 31 31 H 1.09000 * 109.46077 * 301.34041 * 11 9 7 32 32 H 1.09004 * 109.45647 * 61.29666 * 11 9 7 33 33 H 1.09000 * 109.49835 * 58.59510 * 12 11 9 34 34 H 1.09001 * 109.49153 * 178.65409 * 12 11 9 35 35 H 1.09005 * 109.74240 * 295.12078 * 13 12 11 36 36 H 1.09001 * 109.66549 * 174.55126 * 13 12 11 37 37 H 0.97007 * 119.99711 * 5.18751 * 17 15 14 38 38 H 1.08000 * 125.88080 * 0.02562 * 19 18 17 39 39 H 1.08000 * 120.03333 * 0.02622 * 23 22 21 40 40 H 1.08003 * 119.96436 * 180.22943 * 24 23 22 41 41 H 1.08002 * 119.93043 * 179.75967 * 25 24 23 42 42 H 1.08000 * 119.96674 * 179.97438 * 26 25 24 43 43 H 1.08001 * 120.02921 * 179.97438 * 27 26 25 44 44 H 1.09003 * 109.58800 * 173.64663 * 29 14 13 45 45 H 1.09007 * 109.58281 * 293.92333 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.6999 7 6 2.0047 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 1 0.6250 -2.5582 -0.8907 11 6 2.2452 -3.6628 0.0029 12 6 1.4813 -4.9885 -0.0303 13 6 0.6040 -5.0988 1.2259 14 7 -0.2554 -3.9095 1.3017 15 6 -1.5920 -4.0345 1.4215 16 8 -2.2831 -3.0468 1.5804 17 7 -2.1624 -5.2543 1.3652 18 6 -3.5591 -5.3763 1.3804 19 6 -4.4895 -4.3332 1.4510 20 7 -5.6909 -4.8542 1.4410 21 7 -5.6074 -6.1366 1.3709 22 6 -6.6905 -7.0255 1.3399 23 6 -6.4659 -8.3932 1.2565 24 6 -7.5353 -9.2669 1.2306 25 6 -8.8288 -8.7803 1.2778 26 6 -9.0559 -7.4184 1.3555 27 6 -7.9905 -6.5400 1.3867 28 7 -4.2533 -6.4963 1.3255 29 6 0.3706 -2.5813 1.2503 30 1 -0.4850 0.8400 0.0004 31 1 2.8893 -3.5928 -0.8736 32 1 2.8545 -3.6172 0.9056 33 1 0.8530 -5.0242 -0.9202 34 1 2.1902 -5.8163 -0.0519 35 1 1.2356 -5.1504 2.1128 36 1 -0.0153 -5.9937 1.1633 37 1 -1.6067 -6.0477 1.3142 38 1 -4.2568 -3.2799 1.5037 39 1 -5.4560 -8.7736 1.2159 40 1 -7.3611 -10.3310 1.1695 41 1 -9.6634 -9.4653 1.2534 42 1 -10.0673 -7.0414 1.3918 43 1 -8.1686 -5.4764 1.4469 44 1 -0.4026 -1.8144 1.2039 45 1 0.9816 -2.4306 2.1404 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000822285766.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:28:47 Heat of formation + Delta-G solvation = 108.084284 kcal Electronic energy + Delta-G solvation = -28711.686009 eV Core-core repulsion = 24731.753302 eV Total energy + Delta-G solvation = -3979.932707 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.79850 -41.58671 -40.09323 -38.69294 -36.52709 -35.34102 -34.18730 -33.48561 -32.93199 -31.88702 -31.46695 -29.99717 -27.10090 -26.45973 -25.12946 -24.26721 -23.50087 -22.91886 -22.44810 -21.53919 -20.47919 -19.30323 -19.22968 -18.36972 -17.96760 -17.55659 -17.16360 -16.69653 -16.49045 -16.28685 -16.08897 -15.50284 -15.27863 -15.24347 -15.00259 -14.59310 -14.44712 -14.30593 -14.22146 -13.85601 -13.57052 -13.10118 -12.87894 -12.80884 -12.69314 -12.52901 -12.42196 -12.25356 -12.22520 -11.91860 -11.87205 -11.63537 -11.33864 -11.31049 -10.97804 -10.86757 -10.54665 -10.49424 -10.04070 -9.52418 -9.05164 -8.08875 -6.24860 -0.44303 0.31784 0.54974 0.78316 1.18499 1.41679 1.44413 1.49360 1.54271 2.11908 2.43404 2.64939 2.75188 3.01153 3.20354 3.61894 3.87946 3.91478 3.97280 4.12080 4.19782 4.25978 4.34044 4.41888 4.46101 4.49646 4.60947 4.70788 4.75886 4.81809 4.83631 5.02418 5.12461 5.18908 5.21415 5.27592 5.30626 5.34557 5.35862 5.49218 5.52853 5.58125 5.62990 5.77261 5.93670 5.98949 6.06749 6.35781 6.67427 6.85897 6.89295 7.31606 7.45305 8.94500 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.021796 B = 0.002247 C = 0.002073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.332934 B =12460.225682 C =13502.094225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.011 3.989 3 Si 0.954 3.046 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.262 1.262 7 C -0.533 4.533 8 H 0.063 0.937 9 C 0.037 3.963 10 H -0.012 1.012 11 C -0.106 4.106 12 C -0.126 4.126 13 C 0.103 3.897 14 N -0.610 5.610 15 C 0.705 3.295 16 O -0.600 6.600 17 N -0.625 5.625 18 C 0.298 3.702 19 C -0.041 4.041 20 N -0.239 5.239 21 N -0.176 5.176 22 C 0.130 3.870 23 C -0.125 4.125 24 C -0.094 4.094 25 C -0.113 4.113 26 C -0.095 4.095 27 C -0.131 4.131 28 N -0.313 5.313 29 C 0.142 3.858 30 H 0.260 0.740 31 H 0.052 0.948 32 H 0.061 0.939 33 H 0.051 0.949 34 H 0.106 0.894 35 H 0.092 0.908 36 H 0.099 0.901 37 H 0.428 0.572 38 H 0.207 0.793 39 H 0.135 0.865 40 H 0.164 0.836 41 H 0.166 0.834 42 H 0.162 0.838 43 H 0.130 0.870 44 H 0.082 0.918 45 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.105 -22.243 3.573 25.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.189 4.189 3 Si 0.780 3.220 4 H -0.204 1.204 5 H -0.215 1.215 6 H -0.186 1.186 7 C -0.571 4.571 8 H 0.081 0.919 9 C 0.018 3.982 10 H 0.006 0.994 11 C -0.143 4.143 12 C -0.164 4.164 13 C -0.019 4.019 14 N -0.345 5.345 15 C 0.406 3.594 16 O -0.478 6.478 17 N -0.282 5.282 18 C 0.037 3.963 19 C -0.229 4.229 20 N -0.076 5.076 21 N -0.068 5.068 22 C 0.040 3.960 23 C -0.146 4.146 24 C -0.113 4.113 25 C -0.132 4.132 26 C -0.113 4.113 27 C -0.153 4.153 28 N -0.152 5.152 29 C 0.020 3.980 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.079 0.921 33 H 0.069 0.931 34 H 0.124 0.876 35 H 0.110 0.890 36 H 0.117 0.883 37 H 0.271 0.729 38 H 0.223 0.777 39 H 0.153 0.847 40 H 0.182 0.818 41 H 0.183 0.817 42 H 0.180 0.820 43 H 0.148 0.852 44 H 0.100 0.900 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -13.585 -22.242 3.643 26.316 hybrid contribution 1.571 1.980 -0.173 2.534 sum -12.014 -20.261 3.470 23.809 Atomic orbital electron populations 1.70054 1.07272 1.27279 1.50569 1.25852 0.95548 1.02754 0.94702 0.85610 0.78870 0.79417 0.78098 1.20380 1.21479 1.18621 1.21495 0.93318 0.91352 1.50984 0.91900 1.18940 0.93131 0.93816 0.92330 0.99360 1.21519 0.97672 0.93977 1.01176 1.21986 0.99019 0.98463 0.96935 1.22125 0.93703 0.86044 1.00004 1.47716 1.02786 1.09944 1.74040 1.15827 0.83210 0.82032 0.78298 1.90836 1.62073 1.37675 1.57198 1.41665 1.01000 1.09393 1.76161 1.19796 0.86293 0.91912 0.98255 1.25075 0.85585 1.02877 1.09388 1.73399 1.25489 0.94244 1.14476 1.47942 1.03267 1.01626 1.53967 1.17889 0.83334 0.88435 1.06365 1.21081 1.01929 0.89712 1.01884 1.21441 0.91392 1.00891 0.97554 1.21761 0.97979 0.95693 0.97719 1.21414 0.99008 0.93250 0.97645 1.21097 0.89913 1.01871 1.02394 1.78009 0.88418 1.19088 1.29701 1.21784 0.97095 0.80930 0.98220 0.93100 0.92962 0.92069 0.93058 0.87566 0.89011 0.88347 0.72946 0.77699 0.84721 0.81805 0.81651 0.82039 0.85184 0.90012 0.93735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.25 11.39 21.45 0.24 -54.01 16 2 C 0.01 0.61 5.30 84.65 0.45 1.06 16 3 Si 0.95 43.55 29.54 68.60 2.03 45.58 16 4 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 5 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 6 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 7 C -0.53 -28.38 8.56 25.60 0.22 -28.16 16 8 H 0.06 3.22 7.74 -2.91 -0.02 3.20 16 9 C 0.04 1.79 2.25 -11.46 -0.03 1.76 16 10 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 11 C -0.11 -3.80 5.10 30.62 0.16 -3.65 16 12 C -0.13 -3.37 6.10 30.81 0.19 -3.18 16 13 C 0.10 2.61 6.46 86.50 0.56 3.17 16 14 N -0.61 -22.83 2.97 -836.04 -2.48 -25.31 16 15 C 0.71 27.75 8.26 179.05 1.48 29.23 16 16 O -0.60 -28.84 13.01 -4.01 -0.05 -28.90 16 17 N -0.63 -19.46 5.37 -321.13 -1.72 -21.18 16 18 C 0.30 10.20 8.18 133.00 1.09 11.29 16 19 C -0.04 -1.54 10.85 85.24 0.93 -0.61 16 20 N -0.24 -8.28 11.24 -56.91 -0.64 -8.92 16 21 N -0.18 -5.58 4.44 -51.14 -0.23 -5.80 16 22 C 0.13 3.28 6.74 38.10 0.26 3.54 16 23 C -0.13 -2.45 9.65 22.39 0.22 -2.23 16 24 C -0.09 -1.14 10.04 22.25 0.22 -0.92 16 25 C -0.11 -1.11 10.04 22.29 0.22 -0.89 16 26 C -0.09 -1.23 10.04 22.25 0.22 -1.00 16 27 C -0.13 -2.73 9.61 22.39 0.22 -2.52 16 28 N -0.31 -9.94 11.97 -54.37 -0.65 -10.59 16 29 C 0.14 6.69 5.38 86.36 0.46 7.16 16 30 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 31 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 33 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 35 H 0.09 2.00 8.14 -2.38 -0.02 1.98 16 36 H 0.10 1.77 5.57 -2.39 -0.01 1.76 16 37 H 0.43 9.93 6.28 -92.70 -0.58 9.35 16 38 H 0.21 8.33 5.99 -2.91 -0.02 8.32 16 39 H 0.13 2.67 7.68 -2.91 -0.02 2.64 16 40 H 0.16 0.94 8.06 -2.91 -0.02 0.91 16 41 H 0.17 0.46 8.06 -2.91 -0.02 0.44 16 42 H 0.16 1.13 8.06 -2.91 -0.02 1.11 16 43 H 0.13 2.87 7.68 -2.91 -0.02 2.85 16 44 H 0.08 4.66 5.15 -2.39 -0.01 4.65 16 45 H 0.04 2.07 8.14 -2.38 -0.02 2.05 16 Total: -1.00 -73.65 369.41 3.81 -69.84 By element: Atomic # 1 Polarization: 24.78 SS G_CDS: 0.45 Total: 25.23 kcal Atomic # 6 Polarization: 7.18 SS G_CDS: 6.86 Total: 14.05 kcal Atomic # 7 Polarization: -120.33 SS G_CDS: -5.48 Total: -125.80 kcal Atomic # 8 Polarization: -28.84 SS G_CDS: -0.05 Total: -28.90 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Total: -73.65 3.81 -69.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822285766.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.926 kcal (2) G-P(sol) polarization free energy of solvation -73.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds