Wall clock time and date at job start Sat Apr 11 2020 06:18:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86797 * 120.00027 * 2 1 4 4 H 1.48507 * 109.47225 * 269.99915 * 3 2 1 5 5 H 1.48500 * 109.47483 * 29.99784 * 3 2 1 6 6 H 1.48504 * 109.47418 * 149.99643 * 3 2 1 7 7 C 1.37879 * 119.99864 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99807 * 179.97438 * 7 2 1 9 9 C 1.50692 * 120.00071 * 0.02562 * 7 2 1 10 10 N 1.46899 * 109.47088 * 179.97438 * 9 7 2 11 11 C 1.46901 * 111.00134 * 170.00088 * 10 9 7 12 12 C 1.53231 * 109.34141 * 187.25579 * 11 10 9 13 13 N 1.47084 * 108.52295 * 306.16678 * 12 11 10 14 14 C 1.34777 * 120.88299 * 231.19094 * 13 12 11 15 15 O 1.21561 * 119.99899 * 184.04260 * 14 13 12 16 16 C 1.47755 * 119.99812 * 4.03787 * 14 13 12 17 17 C 1.40605 * 126.03938 * 173.48067 * 16 14 13 18 18 N 1.31255 * 106.62296 * 180.02562 * 17 16 14 19 19 N 1.40109 * 107.17544 * 0.02562 * 18 17 16 20 20 C 1.40139 * 125.56505 * 179.97438 * 19 18 17 21 21 C 1.38863 * 120.06996 * 0.02763 * 20 19 18 22 22 C 1.38106 * 119.93289 * 179.97438 * 21 20 19 23 23 C 1.38284 * 120.06951 * 359.97438 * 22 21 20 24 24 C 1.38283 * 120.13707 * 0.02708 * 23 22 21 25 25 C 1.38113 * 120.06920 * 359.97438 * 24 23 22 26 26 N 1.28711 * 108.86666 * 0.24080 * 19 18 17 27 27 C 1.47086 * 118.23176 * 51.45695 * 13 12 11 28 28 C 1.46892 * 111.00185 * 294.30041 * 10 9 7 29 29 H 0.97004 * 119.99692 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.47400 * 59.99397 * 9 7 2 31 31 H 1.09000 * 109.47381 * 299.99471 * 9 7 2 32 32 H 1.08999 * 109.49263 * 67.28949 * 11 10 9 33 33 H 1.09004 * 109.51205 * 307.22627 * 11 10 9 34 34 H 1.09004 * 109.63305 * 186.45671 * 12 11 10 35 35 H 1.09001 * 109.63457 * 65.87732 * 12 11 10 36 36 H 1.07994 * 126.68770 * 0.05224 * 17 16 14 37 37 H 1.08002 * 120.03034 * 0.25083 * 21 20 19 38 38 H 1.08003 * 119.96974 * 179.97438 * 22 21 20 39 39 H 1.07996 * 119.93211 * 179.97438 * 23 22 21 40 40 H 1.07997 * 119.96508 * 179.97438 * 24 23 22 41 41 H 1.07996 * 120.03349 * 179.97438 * 25 24 23 42 42 H 1.08993 * 109.62661 * 68.25746 * 27 13 12 43 43 H 1.09002 * 109.62162 * 188.83606 * 27 13 12 44 44 H 1.09005 * 109.49535 * 292.70841 * 28 10 9 45 45 H 1.09002 * 109.49222 * 52.78529 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2057 -3.6157 0.0005 11 6 1.5212 -4.8935 0.2387 12 6 2.5637 -6.0031 0.4115 13 7 3.4616 -5.9862 -0.7534 14 6 3.7119 -7.1124 -1.4503 15 8 4.5128 -7.0960 -2.3646 16 6 3.0128 -8.3669 -1.1029 17 6 3.0774 -9.5754 -1.8186 18 7 2.3162 -10.4320 -1.1785 19 7 1.7798 -9.7619 -0.0711 20 6 0.9103 -10.3191 0.8762 21 6 0.5115 -11.6441 0.7600 22 6 -0.3450 -12.1905 1.6955 23 6 -0.8051 -11.4197 2.7474 24 6 -0.4098 -10.0999 2.8658 25 6 0.4466 -9.5477 1.9336 26 7 2.2117 -8.5494 -0.0691 27 6 4.0838 -4.7089 -1.1338 28 6 2.9767 -3.6491 -1.2493 29 1 -0.4850 0.8401 0.0004 30 1 0.6247 -2.5570 -0.8896 31 1 0.6241 -2.5567 0.8903 32 1 0.8796 -5.1263 -0.6111 33 1 0.9157 -4.8194 1.1420 34 1 2.0632 -6.9694 0.4740 35 1 3.1394 -5.8265 1.3201 36 1 3.6433 -9.7625 -2.7191 37 1 0.8744 -12.2480 -0.0585 38 1 -0.6559 -13.2209 1.6055 39 1 -1.4751 -11.8491 3.4774 40 1 -0.7711 -9.5003 3.6882 41 1 0.7546 -8.5167 2.0264 42 1 4.8027 -4.4103 -0.3710 43 1 4.5886 -4.8192 -2.0936 44 1 2.3148 -3.8993 -2.0785 45 1 3.4272 -2.6722 -1.4250 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000827484809.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:36 Heat of formation + Delta-G solvation = 136.413601 kcal Electronic energy + Delta-G solvation = -28998.842598 eV Core-core repulsion = 25020.138342 eV Total energy + Delta-G solvation = -3978.704256 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.02860 -39.91279 -39.42003 -37.51049 -34.55963 -34.20753 -32.90166 -32.32817 -31.41371 -30.82228 -29.80182 -28.26529 -25.87592 -24.86689 -24.05650 -23.27071 -22.50253 -21.87902 -21.60874 -20.63718 -19.23054 -18.49284 -17.06802 -16.74487 -16.70876 -16.35376 -15.88432 -15.67843 -15.09194 -14.93012 -14.74621 -14.45741 -14.40401 -13.96889 -13.85067 -13.81206 -13.58681 -13.34863 -12.90595 -12.62459 -12.37443 -12.07829 -12.00659 -11.65425 -11.39475 -11.24160 -11.10417 -10.87635 -10.80831 -10.74761 -10.56574 -10.54196 -10.37181 -10.07308 -9.78737 -9.50695 -9.25620 -8.73606 -8.51310 -8.43400 -7.32717 -6.06497 -4.08304 0.14517 0.84593 1.38631 1.54083 1.62616 2.96871 3.14436 3.29762 3.30061 3.36511 3.39852 3.41144 4.31966 4.39352 4.40039 4.48800 4.58797 4.64037 4.83640 4.86589 4.97509 5.09152 5.26192 5.29175 5.33859 5.44583 5.49617 5.55870 5.62472 5.66579 5.81252 5.84352 5.85196 5.94685 6.00481 6.01950 6.23988 6.27373 6.41360 6.50928 6.59715 6.72779 7.21833 7.26991 7.36648 7.53744 7.74476 8.00961 8.08648 8.12334 8.47606 8.99037 9.56316 11.04333 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014146 B = 0.002636 C = 0.002272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1978.930581 B =10620.171754 C =12319.863388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.898 3.102 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.272 1.272 7 C -0.509 4.509 8 H 0.064 0.936 9 C 0.194 3.806 10 N -0.536 5.536 11 C 0.043 3.957 12 C 0.082 3.918 13 N -0.588 5.588 14 C 0.600 3.400 15 O -0.537 6.537 16 C -0.041 4.041 17 C 0.080 3.920 18 N -0.277 5.277 19 N -0.164 5.164 20 C 0.153 3.847 21 C -0.108 4.108 22 C -0.102 4.102 23 C -0.116 4.116 24 C -0.097 4.097 25 C -0.110 4.110 26 N -0.198 5.198 27 C 0.116 3.884 28 C 0.051 3.949 29 H 0.262 0.738 30 H -0.009 1.009 31 H 0.031 0.969 32 H 0.024 0.976 33 H 0.080 0.920 34 H 0.124 0.876 35 H 0.075 0.925 36 H 0.219 0.781 37 H 0.140 0.860 38 H 0.135 0.865 39 H 0.132 0.868 40 H 0.138 0.862 41 H 0.143 0.857 42 H 0.077 0.923 43 H 0.091 0.909 44 H 0.025 0.975 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.320 -24.959 3.498 25.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.726 3.274 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.197 1.197 7 C -0.548 4.548 8 H 0.082 0.918 9 C 0.069 3.931 10 N -0.261 5.261 11 C -0.086 4.086 12 C -0.042 4.042 13 N -0.320 5.320 14 C 0.384 3.616 15 O -0.413 6.413 16 C -0.208 4.208 17 C -0.111 4.111 18 N -0.105 5.105 19 N -0.055 5.055 20 C 0.062 3.938 21 C -0.129 4.129 22 C -0.120 4.120 23 C -0.135 4.135 24 C -0.116 4.116 25 C -0.131 4.131 26 N -0.042 5.042 27 C -0.006 4.006 28 C -0.078 4.078 29 H 0.071 0.929 30 H 0.008 0.992 31 H 0.049 0.951 32 H 0.042 0.958 33 H 0.099 0.901 34 H 0.141 0.859 35 H 0.093 0.907 36 H 0.236 0.764 37 H 0.158 0.842 38 H 0.153 0.847 39 H 0.149 0.851 40 H 0.156 0.844 41 H 0.161 0.839 42 H 0.096 0.904 43 H 0.109 0.891 44 H 0.044 0.956 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 0.118 -25.324 4.227 25.674 hybrid contribution 0.243 1.332 -1.236 1.833 sum 0.361 -23.992 2.991 24.180 Atomic orbital electron populations 1.69961 1.06100 1.26844 1.50870 1.24996 0.94866 0.99371 0.95357 0.86495 0.79814 0.83027 0.78071 1.20710 1.21269 1.19717 1.21143 0.93505 0.89858 1.50254 0.91761 1.19718 0.89997 0.87216 0.96154 1.62102 1.27991 1.02657 1.33383 1.22372 0.94887 0.90641 1.00736 1.22847 0.92114 1.01846 0.87391 1.48072 1.45965 1.08124 1.29817 1.16786 0.81455 0.81166 0.82145 1.90792 1.35293 1.84424 1.30766 1.23156 1.03631 0.98186 0.95777 1.25125 0.96479 0.89196 1.00314 1.78009 1.13242 1.21438 0.97782 1.48566 1.33757 1.04326 1.18901 1.17424 0.93650 0.93554 0.89187 1.20930 0.98559 0.92620 1.00785 1.21067 0.96655 1.00416 0.93885 1.21367 0.99723 0.94212 0.98221 1.21115 0.96466 0.95454 0.98542 1.21045 0.98119 1.00892 0.93024 1.73620 1.09630 1.00767 1.20151 1.22067 0.95910 0.80993 1.01636 1.22431 0.95074 0.99091 0.91203 0.92888 0.99161 0.95057 0.95760 0.90124 0.85915 0.90710 0.76425 0.84175 0.84688 0.85053 0.84374 0.83942 0.90447 0.89116 0.95647 0.88301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.37 13.29 55.43 0.74 -25.63 16 2 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 3 Si 0.90 21.32 29.54 -169.99 -5.02 16.30 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.51 -13.94 8.41 -34.44 -0.29 -14.23 16 8 H 0.06 1.73 7.13 -52.49 -0.37 1.36 16 9 C 0.19 4.94 4.72 -4.98 -0.02 4.92 16 10 N -0.54 -11.22 4.62 -235.48 -1.09 -12.31 16 11 C 0.04 0.76 5.62 -3.70 -0.02 0.74 16 12 C 0.08 1.22 6.45 -3.60 -0.02 1.20 16 13 N -0.59 -9.32 3.00 -173.33 -0.52 -9.85 16 14 C 0.60 9.38 7.71 -12.37 -0.10 9.28 16 15 O -0.54 -9.32 16.38 5.31 0.09 -9.23 16 16 C -0.04 -0.56 6.87 -82.99 -0.57 -1.13 16 17 C 0.08 0.92 11.92 -16.91 -0.20 0.72 16 18 N -0.28 -3.34 11.90 30.85 0.37 -2.97 16 19 N -0.16 -2.03 4.44 32.48 0.14 -1.88 16 20 C 0.15 1.59 6.74 -83.60 -0.56 1.03 16 21 C -0.11 -0.91 9.65 -39.40 -0.38 -1.29 16 22 C -0.10 -0.63 10.04 -39.61 -0.40 -1.03 16 23 C -0.12 -0.68 10.04 -39.55 -0.40 -1.08 16 24 C -0.10 -0.66 10.04 -39.61 -0.40 -1.06 16 25 C -0.11 -1.00 9.61 -39.40 -0.38 -1.38 16 26 N -0.20 -2.61 7.59 33.29 0.25 -2.36 16 27 C 0.12 1.89 6.62 -3.36 -0.02 1.87 16 28 C 0.05 0.98 5.47 -3.47 -0.02 0.96 16 29 H 0.26 7.26 8.31 -40.82 -0.34 6.93 16 30 H -0.01 -0.26 8.12 -51.93 -0.42 -0.68 16 31 H 0.03 0.85 7.97 -51.93 -0.41 0.43 16 32 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.08 1.35 7.99 -51.93 -0.41 0.94 16 34 H 0.12 1.69 3.79 -113.04 -0.43 1.26 16 35 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.22 1.83 8.06 -52.49 -0.42 1.41 16 37 H 0.14 1.13 7.67 -52.49 -0.40 0.72 16 38 H 0.14 0.50 8.06 -52.48 -0.42 0.08 16 39 H 0.13 0.45 8.06 -52.49 -0.42 0.02 16 40 H 0.14 0.66 8.06 -52.49 -0.42 0.24 16 41 H 0.14 1.30 7.67 -52.49 -0.40 0.89 16 42 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 43 H 0.09 1.43 7.08 -51.93 -0.37 1.06 16 44 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 45 H 0.10 2.00 6.67 -51.93 -0.35 1.65 16 LS Contribution 374.66 15.07 5.65 5.65 Total: -1.00 -32.60 374.66 -9.36 -41.96 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: -6.09 Total: -0.65 kcal Atomic # 6 Polarization: 4.84 SS G_CDS: -3.88 Total: 0.96 kcal Atomic # 7 Polarization: -54.89 SS G_CDS: -0.11 Total: -55.00 kcal Atomic # 8 Polarization: -9.32 SS G_CDS: 0.09 Total: -9.23 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.60 -9.36 -41.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827484809.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.378 kcal (2) G-P(sol) polarization free energy of solvation -32.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 145.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 136.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds