Wall clock time and date at job start Sat Apr 11 2020 06:18:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86797 * 120.00027 * 2 1 4 4 H 1.48507 * 109.47225 * 269.99915 * 3 2 1 5 5 H 1.48500 * 109.47483 * 29.99784 * 3 2 1 6 6 H 1.48504 * 109.47418 * 149.99643 * 3 2 1 7 7 C 1.37879 * 119.99864 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99807 * 179.97438 * 7 2 1 9 9 C 1.50692 * 120.00071 * 0.02562 * 7 2 1 10 10 N 1.46899 * 109.47088 * 179.97438 * 9 7 2 11 11 C 1.46901 * 111.00134 * 170.00088 * 10 9 7 12 12 C 1.53231 * 109.34141 * 187.25579 * 11 10 9 13 13 N 1.47084 * 108.52295 * 306.16678 * 12 11 10 14 14 C 1.34777 * 120.88299 * 231.19094 * 13 12 11 15 15 O 1.21561 * 119.99899 * 184.04260 * 14 13 12 16 16 C 1.47755 * 119.99812 * 4.03787 * 14 13 12 17 17 C 1.40605 * 126.03938 * 173.48067 * 16 14 13 18 18 N 1.31255 * 106.62296 * 180.02562 * 17 16 14 19 19 N 1.40109 * 107.17544 * 0.02562 * 18 17 16 20 20 C 1.40139 * 125.56505 * 179.97438 * 19 18 17 21 21 C 1.38863 * 120.06996 * 0.02763 * 20 19 18 22 22 C 1.38106 * 119.93289 * 179.97438 * 21 20 19 23 23 C 1.38284 * 120.06951 * 359.97438 * 22 21 20 24 24 C 1.38283 * 120.13707 * 0.02708 * 23 22 21 25 25 C 1.38113 * 120.06920 * 359.97438 * 24 23 22 26 26 N 1.28711 * 108.86666 * 0.24080 * 19 18 17 27 27 C 1.47086 * 118.23176 * 51.45695 * 13 12 11 28 28 C 1.46892 * 111.00185 * 294.30041 * 10 9 7 29 29 H 0.97004 * 119.99692 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.47400 * 59.99397 * 9 7 2 31 31 H 1.09000 * 109.47381 * 299.99471 * 9 7 2 32 32 H 1.08999 * 109.49263 * 67.28949 * 11 10 9 33 33 H 1.09004 * 109.51205 * 307.22627 * 11 10 9 34 34 H 1.09004 * 109.63305 * 186.45671 * 12 11 10 35 35 H 1.09001 * 109.63457 * 65.87732 * 12 11 10 36 36 H 1.07994 * 126.68770 * 0.05224 * 17 16 14 37 37 H 1.08002 * 120.03034 * 0.25083 * 21 20 19 38 38 H 1.08003 * 119.96974 * 179.97438 * 22 21 20 39 39 H 1.07996 * 119.93211 * 179.97438 * 23 22 21 40 40 H 1.07997 * 119.96508 * 179.97438 * 24 23 22 41 41 H 1.07996 * 120.03349 * 179.97438 * 25 24 23 42 42 H 1.08993 * 109.62661 * 68.25746 * 27 13 12 43 43 H 1.09002 * 109.62162 * 188.83606 * 27 13 12 44 44 H 1.09005 * 109.49535 * 292.70841 * 28 10 9 45 45 H 1.09002 * 109.49222 * 52.78529 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2057 -3.6157 0.0005 11 6 1.5212 -4.8935 0.2387 12 6 2.5637 -6.0031 0.4115 13 7 3.4616 -5.9862 -0.7534 14 6 3.7119 -7.1124 -1.4503 15 8 4.5128 -7.0960 -2.3646 16 6 3.0128 -8.3669 -1.1029 17 6 3.0774 -9.5754 -1.8186 18 7 2.3162 -10.4320 -1.1785 19 7 1.7798 -9.7619 -0.0711 20 6 0.9103 -10.3191 0.8762 21 6 0.5115 -11.6441 0.7600 22 6 -0.3450 -12.1905 1.6955 23 6 -0.8051 -11.4197 2.7474 24 6 -0.4098 -10.0999 2.8658 25 6 0.4466 -9.5477 1.9336 26 7 2.2117 -8.5494 -0.0691 27 6 4.0838 -4.7089 -1.1338 28 6 2.9767 -3.6491 -1.2493 29 1 -0.4850 0.8401 0.0004 30 1 0.6247 -2.5570 -0.8896 31 1 0.6241 -2.5567 0.8903 32 1 0.8796 -5.1263 -0.6111 33 1 0.9157 -4.8194 1.1420 34 1 2.0632 -6.9694 0.4740 35 1 3.1394 -5.8265 1.3201 36 1 3.6433 -9.7625 -2.7191 37 1 0.8744 -12.2480 -0.0585 38 1 -0.6559 -13.2209 1.6055 39 1 -1.4751 -11.8491 3.4774 40 1 -0.7711 -9.5003 3.6882 41 1 0.7546 -8.5167 2.0264 42 1 4.8027 -4.4103 -0.3710 43 1 4.5886 -4.8192 -2.0936 44 1 2.3148 -3.8993 -2.0785 45 1 3.4272 -2.6722 -1.4250 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000827484809.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:35 Heat of formation + Delta-G solvation = 115.504262 kcal Electronic energy + Delta-G solvation = -28999.749294 eV Core-core repulsion = 25020.138342 eV Total energy + Delta-G solvation = -3979.610953 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.97251 -41.12789 -40.11018 -38.99507 -36.12832 -35.00185 -34.50187 -33.72856 -32.19177 -31.93657 -30.75992 -29.91342 -27.49103 -26.01393 -25.03873 -24.41789 -23.92251 -23.06438 -22.47462 -21.93557 -20.46854 -19.39084 -18.54269 -18.22825 -17.69642 -17.39784 -17.08227 -16.66217 -16.43075 -16.24338 -16.01842 -15.66351 -15.47607 -15.34052 -15.10273 -14.99410 -14.52514 -14.40456 -14.09161 -13.96196 -13.77868 -13.37267 -13.16877 -12.77451 -12.70599 -12.61937 -12.58347 -12.36309 -12.22981 -12.13807 -11.97492 -11.85527 -11.55214 -11.44058 -11.40976 -11.06621 -10.62218 -10.06950 -9.90476 -9.39855 -9.09245 -8.20989 -6.30992 -0.65757 0.29105 0.45611 0.68912 0.80189 1.42836 1.43543 1.55314 1.77193 1.99980 2.40028 2.45252 2.71145 3.11381 3.22300 3.30473 3.66090 3.82185 3.85363 3.94886 4.01324 4.14610 4.19306 4.27198 4.32730 4.34950 4.38583 4.40692 4.48920 4.59217 4.73773 4.79883 4.88388 4.91286 4.98115 5.00014 5.14180 5.19089 5.21838 5.30874 5.38481 5.47159 5.57174 5.63663 5.92096 6.01565 6.10786 6.27738 6.52303 6.55258 6.84415 6.86201 7.38870 8.90314 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014146 B = 0.002636 C = 0.002272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1978.930581 B =10620.171754 C =12319.863388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.002 3.998 3 Si 0.969 3.031 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.263 1.263 7 C -0.522 4.522 8 H 0.067 0.933 9 C 0.209 3.791 10 N -0.538 5.538 11 C 0.044 3.956 12 C 0.094 3.906 13 N -0.595 5.595 14 C 0.604 3.396 15 O -0.556 6.556 16 C -0.065 4.065 17 C 0.085 3.915 18 N -0.285 5.285 19 N -0.158 5.158 20 C 0.114 3.886 21 C -0.114 4.114 22 C -0.098 4.098 23 C -0.106 4.106 24 C -0.100 4.100 25 C -0.123 4.123 26 N -0.204 5.204 27 C 0.127 3.873 28 C 0.055 3.945 29 H 0.264 0.736 30 H -0.042 1.042 31 H 0.010 0.990 32 H 0.013 0.987 33 H 0.087 0.913 34 H 0.139 0.861 35 H 0.084 0.916 36 H 0.245 0.755 37 H 0.140 0.860 38 H 0.165 0.835 39 H 0.164 0.836 40 H 0.159 0.841 41 H 0.135 0.865 42 H 0.088 0.912 43 H 0.098 0.902 44 H 0.012 0.988 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.586 -26.639 4.641 27.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.196 4.196 3 Si 0.794 3.206 4 H -0.200 1.200 5 H -0.209 1.209 6 H -0.187 1.187 7 C -0.561 4.561 8 H 0.086 0.914 9 C 0.083 3.917 10 N -0.263 5.263 11 C -0.085 4.085 12 C -0.029 4.029 13 N -0.327 5.327 14 C 0.390 3.610 15 O -0.433 6.433 16 C -0.229 4.229 17 C -0.104 4.104 18 N -0.112 5.112 19 N -0.050 5.050 20 C 0.024 3.976 21 C -0.135 4.135 22 C -0.116 4.116 23 C -0.124 4.124 24 C -0.118 4.118 25 C -0.144 4.144 26 N -0.049 5.049 27 C 0.005 3.995 28 C -0.074 4.074 29 H 0.073 0.927 30 H -0.025 1.025 31 H 0.028 0.972 32 H 0.031 0.969 33 H 0.105 0.895 34 H 0.156 0.844 35 H 0.102 0.898 36 H 0.261 0.739 37 H 0.158 0.842 38 H 0.182 0.818 39 H 0.181 0.819 40 H 0.177 0.823 41 H 0.153 0.847 42 H 0.106 0.894 43 H 0.117 0.883 44 H 0.030 0.970 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 0.399 -27.033 5.368 27.563 hybrid contribution 0.017 1.687 -1.503 2.260 sum 0.416 -25.345 3.865 25.642 Atomic orbital electron populations 1.70091 1.07786 1.27914 1.51787 1.25915 0.95712 1.03225 0.94785 0.85379 0.78646 0.78225 0.78353 1.19980 1.20884 1.18669 1.21458 0.93785 0.90815 1.50013 0.91448 1.19371 0.90014 0.88798 0.93494 1.62040 1.27084 1.02905 1.34276 1.22455 0.95667 0.89883 1.00509 1.22804 0.91391 1.01293 0.87410 1.48118 1.46228 1.08145 1.30176 1.16929 0.81058 0.81514 0.81478 1.90771 1.36179 1.84899 1.31468 1.22906 1.04930 0.98082 0.97018 1.25547 0.96074 0.88119 1.00701 1.78006 1.13649 1.21619 0.97938 1.48798 1.33279 1.03913 1.18991 1.17858 0.95053 0.94760 0.89893 1.21109 0.99015 0.91882 1.01471 1.21457 0.95376 1.01782 0.93008 1.21800 0.98875 0.93552 0.98196 1.21440 0.95643 0.96341 0.98408 1.21167 0.99001 1.00723 0.93527 1.73420 1.09692 1.01592 1.20183 1.21902 0.94689 0.80393 1.02518 1.22393 0.95381 0.99704 0.89938 0.92704 1.02470 0.97233 0.96908 0.89456 0.84420 0.89803 0.73880 0.84224 0.81760 0.81866 0.82338 0.84729 0.89402 0.88339 0.97011 0.89519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.05 13.29 21.45 0.28 -55.76 16 2 C 0.00 0.09 5.46 84.65 0.46 0.55 16 3 Si 0.97 43.86 29.54 68.60 2.03 45.89 16 4 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 5 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 6 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 7 C -0.52 -29.16 8.41 25.60 0.22 -28.94 16 8 H 0.07 3.65 7.13 -2.91 -0.02 3.63 16 9 C 0.21 11.10 4.72 85.55 0.40 11.50 16 10 N -0.54 -23.09 4.62 -898.93 -4.15 -27.25 16 11 C 0.04 1.58 5.62 86.38 0.49 2.06 16 12 C 0.09 2.79 6.45 86.35 0.56 3.35 16 13 N -0.60 -18.71 3.00 -820.55 -2.46 -21.17 16 14 C 0.60 18.68 7.71 86.76 0.67 19.35 16 15 O -0.56 -19.03 16.38 -3.91 -0.06 -19.10 16 16 C -0.06 -1.74 6.87 42.21 0.29 -1.45 16 17 C 0.09 1.91 11.92 85.36 1.02 2.93 16 18 N -0.28 -6.66 11.90 -56.32 -0.67 -7.33 16 19 N -0.16 -3.83 4.44 -51.14 -0.23 -4.06 16 20 C 0.11 2.31 6.74 38.11 0.26 2.57 16 21 C -0.11 -1.76 9.65 22.39 0.22 -1.55 16 22 C -0.10 -0.93 10.04 22.25 0.22 -0.71 16 23 C -0.11 -0.88 10.04 22.29 0.22 -0.65 16 24 C -0.10 -1.15 10.04 22.25 0.22 -0.92 16 25 C -0.12 -2.15 9.61 22.39 0.22 -1.93 16 26 N -0.20 -5.33 7.59 -48.59 -0.37 -5.70 16 27 C 0.13 4.11 6.62 86.50 0.57 4.68 16 28 C 0.05 2.15 5.47 86.54 0.47 2.63 16 29 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 30 H -0.04 -2.48 8.12 -2.39 -0.02 -2.50 16 31 H 0.01 0.54 7.97 -2.39 -0.02 0.52 16 32 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.09 2.99 7.99 -2.38 -0.02 2.97 16 34 H 0.14 3.76 3.79 -81.45 -0.31 3.45 16 35 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 36 H 0.25 3.78 8.06 -2.91 -0.02 3.76 16 37 H 0.14 2.10 7.67 -2.91 -0.02 2.08 16 38 H 0.16 0.57 8.06 -2.91 -0.02 0.55 16 39 H 0.16 0.34 8.06 -2.91 -0.02 0.32 16 40 H 0.16 1.10 8.06 -2.91 -0.02 1.08 16 41 H 0.13 2.45 7.67 -2.91 -0.02 2.43 16 42 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 43 H 0.10 3.06 7.08 -2.39 -0.02 3.04 16 44 H 0.01 0.49 8.14 -2.38 -0.02 0.47 16 45 H 0.09 3.59 6.67 -2.39 -0.02 3.57 16 Total: -1.00 -71.55 374.66 1.58 -69.96 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: 0.71 Total: 11.06 kcal Atomic # 6 Polarization: 6.95 SS G_CDS: 6.50 Total: 13.46 kcal Atomic # 7 Polarization: -113.67 SS G_CDS: -7.60 Total: -121.27 kcal Atomic # 8 Polarization: -19.03 SS G_CDS: -0.06 Total: -19.10 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Total: -71.55 1.58 -69.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827484809.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.466 kcal (2) G-P(sol) polarization free energy of solvation -71.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.962 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds