Wall clock time and date at job start Sat Apr 11 2020 06:18:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 119.99856 * 2 1 4 4 H 1.48500 * 109.47110 * 269.99832 * 3 2 1 5 5 H 1.48505 * 109.47321 * 29.99281 * 3 2 1 6 6 H 1.48499 * 109.47424 * 149.99614 * 3 2 1 7 7 C 1.37879 * 120.00090 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99925 * 0.02562 * 7 2 1 9 9 C 1.50697 * 119.99876 * 180.02562 * 7 2 1 10 10 N 1.46895 * 109.47046 * 185.28332 * 9 7 2 11 11 C 1.46895 * 111.00297 * 286.72281 * 10 9 7 12 12 C 1.53245 * 109.34382 * 187.25369 * 11 10 9 13 13 N 1.47077 * 108.51684 * 306.17383 * 12 11 10 14 14 C 1.34783 * 120.87897 * 231.18480 * 13 12 11 15 15 O 1.21581 * 120.00085 * 4.27008 * 14 13 12 16 16 C 1.47593 * 119.99875 * 184.27615 * 14 13 12 17 17 C 1.39979 * 120.59575 * 302.91221 * 16 14 13 18 18 C 1.38349 * 118.34434 * 180.24913 * 17 16 14 19 19 C 1.38384 * 119.45609 * 359.74846 * 18 17 16 20 20 N 1.31842 * 121.18518 * 359.97438 * 19 18 17 21 21 C 1.32256 * 121.80136 * 0.02562 * 20 19 18 22 22 N 1.39355 * 119.79787 * 179.97438 * 21 20 19 23 23 C 1.35937 * 126.10545 * 334.52186 * 22 21 20 24 24 C 1.35241 * 107.59876 * 179.80631 * 23 22 21 25 25 C 1.40010 * 107.97420 * 0.37189 * 24 23 22 26 26 N 1.30792 * 108.37835 * 359.62336 * 25 24 23 27 27 C 1.47082 * 118.24098 * 51.45561 * 13 12 11 28 28 C 1.46902 * 110.99912 * 51.02975 * 10 9 7 29 29 H 0.97000 * 120.00164 * 0.02562 * 1 2 3 30 30 H 1.09009 * 109.47063 * 65.28833 * 9 7 2 31 31 H 1.09002 * 109.47346 * 305.28846 * 9 7 2 32 32 H 1.08995 * 109.49229 * 67.29529 * 11 10 9 33 33 H 1.08997 * 109.49568 * 307.21397 * 11 10 9 34 34 H 1.08990 * 109.62880 * 186.46192 * 12 11 10 35 35 H 1.09000 * 109.62747 * 65.87447 * 12 11 10 36 36 H 1.07993 * 120.82503 * 359.97438 * 17 16 14 37 37 H 1.08000 * 120.26998 * 179.72894 * 18 17 16 38 38 H 1.08002 * 119.41267 * 180.02562 * 19 18 17 39 39 H 1.07994 * 126.20094 * 0.05999 * 23 22 21 40 40 H 1.07999 * 126.01194 * 180.22359 * 24 23 22 41 41 H 1.07992 * 125.80906 * 179.88973 * 25 24 23 42 42 H 1.09001 * 109.63006 * 68.25119 * 27 13 12 43 43 H 1.08998 * 109.62931 * 188.83102 * 27 13 12 44 44 H 1.09002 * 109.49026 * 292.69866 * 28 10 9 45 45 H 1.08999 * 109.49479 * 52.78522 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6528 0.6999 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0011 10 7 4.0013 -2.5731 -0.1259 11 6 3.8043 -3.3190 1.1241 12 6 4.4871 -4.6863 1.0123 13 7 3.9909 -5.3587 -0.1980 14 6 3.5139 -6.6181 -0.1433 15 8 3.4174 -7.1857 0.9275 16 6 3.1088 -7.3082 -1.3835 17 6 2.1379 -6.7514 -2.2241 18 6 1.7896 -7.4405 -3.3721 19 6 2.4082 -8.6452 -3.6567 20 7 3.3244 -9.1487 -2.8535 21 6 3.6940 -8.5311 -1.7439 22 7 4.6665 -9.1015 -0.9248 23 6 4.9661 -10.4246 -0.8391 24 6 5.9654 -10.5601 0.0620 25 6 6.2830 -9.2867 0.5496 26 7 5.5093 -8.4137 -0.0420 27 6 4.0345 -4.6225 -1.4705 28 6 3.3640 -3.2557 -1.2599 29 1 -0.4850 0.8400 -0.0004 30 1 3.8745 -0.7641 0.9348 31 1 3.8752 -0.6005 -0.8377 32 1 2.7377 -3.4584 1.3002 33 1 4.2403 -2.7614 1.9530 34 1 4.2482 -5.2877 1.8894 35 1 5.5664 -4.5518 0.9399 36 1 1.6690 -5.8096 -1.9802 37 1 1.0410 -7.0416 -4.0406 38 1 2.1361 -9.1824 -4.5533 39 1 4.4946 -11.2226 -1.3935 40 1 6.4341 -11.4877 0.3558 41 1 7.0411 -9.0628 1.2854 42 1 5.0710 -4.4820 -1.7769 43 1 3.4962 -5.1818 -2.2357 44 1 2.3035 -3.3960 -1.0506 45 1 3.4808 -2.6521 -2.1600 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000827484879.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:38 Heat of formation + Delta-G solvation = 122.741570 kcal Electronic energy + Delta-G solvation = -30064.562786 eV Core-core repulsion = 26085.265667 eV Total energy + Delta-G solvation = -3979.297119 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.79749 -40.47106 -39.31290 -37.46377 -34.58113 -33.86284 -33.08046 -32.25912 -30.69619 -30.47611 -29.69058 -28.56977 -25.91652 -24.56672 -24.36835 -23.19219 -22.16675 -21.35193 -21.06414 -20.48554 -19.00526 -18.51124 -17.35875 -16.98317 -16.80530 -15.98655 -15.80064 -15.39299 -14.76865 -14.62584 -14.61568 -14.52325 -14.18034 -14.07255 -13.88219 -13.65621 -13.47074 -13.21578 -12.91353 -12.70950 -12.47469 -12.41543 -12.17024 -11.37797 -11.28996 -11.07063 -10.89975 -10.68402 -10.62427 -10.51122 -10.31507 -10.25163 -10.14499 -10.03241 -9.60201 -9.50229 -9.30128 -8.67743 -8.53914 -8.37473 -7.33363 -6.18671 -4.19593 0.31437 0.67448 1.88591 1.98421 2.68717 2.79063 3.09607 3.21797 3.30381 3.33719 3.43772 4.00159 4.22661 4.32385 4.45171 4.53424 4.68520 4.77018 4.79442 4.93722 5.05440 5.14143 5.28299 5.30722 5.43925 5.47939 5.57537 5.65110 5.70257 5.71860 5.77938 5.86379 5.93353 6.04162 6.10336 6.32258 6.40418 6.55931 6.65073 6.70982 6.86633 6.88525 6.96607 7.18058 7.43340 7.57822 7.64237 7.91981 7.94573 8.34431 8.35255 8.82446 9.43782 10.93984 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017805 B = 0.003102 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.243737 B = 9024.981337 C =10071.420006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.073 3.927 3 Si 0.880 3.120 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.264 1.264 7 C -0.555 4.555 8 H 0.074 0.926 9 C 0.155 3.845 10 N -0.533 5.533 11 C 0.046 3.954 12 C 0.124 3.876 13 N -0.594 5.594 14 C 0.579 3.421 15 O -0.526 6.526 16 C -0.164 4.164 17 C -0.026 4.026 18 C -0.183 4.183 19 C 0.144 3.856 20 N -0.505 5.505 21 C 0.405 3.595 22 N -0.327 5.327 23 C 0.074 3.926 24 C -0.261 4.261 25 C 0.060 3.940 26 N -0.255 5.255 27 C 0.103 3.897 28 C 0.052 3.948 29 H 0.264 0.736 30 H 0.028 0.972 31 H 0.028 0.972 32 H 0.045 0.955 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.069 0.931 36 H 0.155 0.845 37 H 0.152 0.848 38 H 0.172 0.828 39 H 0.179 0.821 40 H 0.155 0.845 41 H 0.191 0.809 42 H 0.070 0.930 43 H 0.078 0.922 44 H 0.052 0.948 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.796 -18.910 -6.773 21.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.130 4.130 3 Si 0.707 3.293 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.593 4.593 8 H 0.092 0.908 9 C 0.029 3.971 10 N -0.257 5.257 11 C -0.083 4.083 12 C 0.002 3.998 13 N -0.327 5.327 14 C 0.365 3.635 15 O -0.402 6.402 16 C -0.172 4.172 17 C -0.052 4.052 18 C -0.204 4.204 19 C -0.014 4.014 20 N -0.218 5.218 21 C 0.177 3.823 22 N -0.105 5.105 23 C -0.066 4.066 24 C -0.290 4.290 25 C -0.130 4.130 26 N -0.072 5.072 27 C -0.020 4.020 28 C -0.078 4.078 29 H 0.074 0.926 30 H 0.046 0.954 31 H 0.046 0.954 32 H 0.063 0.937 33 H 0.097 0.903 34 H 0.107 0.893 35 H 0.088 0.912 36 H 0.172 0.828 37 H 0.169 0.831 38 H 0.189 0.811 39 H 0.196 0.804 40 H 0.173 0.827 41 H 0.207 0.793 42 H 0.089 0.911 43 H 0.096 0.904 44 H 0.070 0.930 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 9.134 -18.608 -6.630 21.764 hybrid contribution -0.827 0.878 0.294 1.241 sum 8.307 -17.731 -6.335 20.580 Atomic orbital electron populations 1.69923 1.06399 1.27124 1.50074 1.24974 0.94697 0.99270 0.94035 0.86780 0.80384 0.83486 0.78647 1.20139 1.21305 1.18868 1.21668 0.90580 0.94673 1.52402 0.90768 1.20186 0.94686 0.85325 0.96912 1.62387 1.56829 1.03814 1.02690 1.22324 0.99562 0.92837 0.93557 1.21756 0.98229 0.92747 0.87110 1.47915 1.61656 1.12934 1.10206 1.17510 0.77289 0.81138 0.87527 1.90760 1.54407 1.65494 1.29582 1.20565 1.00990 0.96891 0.98717 1.21861 0.92664 0.99084 0.91622 1.22163 1.02758 0.96672 0.98765 1.22714 0.89356 0.92745 0.96608 1.66983 1.16443 1.35481 1.02855 1.17418 0.87890 0.89023 0.87944 1.45580 1.27994 1.05344 1.31604 1.22815 0.97826 0.86448 0.99554 1.21616 1.03558 0.99206 1.04586 1.24126 0.98350 0.91270 0.99240 1.77643 1.04450 1.19901 1.05198 1.22255 1.01732 0.93081 0.84978 1.22343 0.97315 0.92385 0.95731 0.92597 0.95427 0.95404 0.93703 0.90348 0.89331 0.91247 0.82776 0.83061 0.81135 0.80431 0.82750 0.79268 0.91123 0.90379 0.92962 0.90157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.58 13.96 55.43 0.77 -25.81 16 2 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 3 Si 0.88 20.78 27.37 -169.99 -4.65 16.13 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.26 -6.01 6.70 56.52 0.38 -5.64 16 7 C -0.55 -14.79 8.37 -34.44 -0.29 -15.08 16 8 H 0.07 2.16 6.15 -52.49 -0.32 1.84 16 9 C 0.16 3.56 4.26 -4.98 -0.02 3.53 16 10 N -0.53 -10.50 4.83 -235.47 -1.14 -11.64 16 11 C 0.05 0.87 5.36 -3.70 -0.02 0.85 16 12 C 0.12 2.06 6.61 -3.60 -0.02 2.03 16 13 N -0.59 -9.81 3.00 -173.39 -0.52 -10.33 16 14 C 0.58 10.06 5.54 -12.44 -0.07 9.99 16 15 O -0.53 -10.70 15.14 5.29 0.08 -10.62 16 16 C -0.16 -2.41 4.97 -104.66 -0.52 -2.93 16 17 C -0.03 -0.30 7.57 -38.89 -0.29 -0.60 16 18 C -0.18 -1.56 10.09 -39.49 -0.40 -1.96 16 19 C 0.14 1.25 11.17 -17.49 -0.20 1.05 16 20 N -0.50 -6.02 10.00 -12.03 -0.12 -6.14 16 21 C 0.41 5.83 7.42 -154.37 -1.15 4.68 16 22 N -0.33 -4.83 3.60 -11.89 -0.04 -4.87 16 23 C 0.07 0.87 11.20 -16.80 -0.19 0.68 16 24 C -0.26 -2.72 10.80 -39.99 -0.43 -3.15 16 25 C 0.06 0.72 12.02 -17.33 -0.21 0.52 16 26 N -0.25 -3.97 9.39 30.64 0.29 -3.68 16 27 C 0.10 1.53 6.23 -3.36 -0.02 1.51 16 28 C 0.05 0.92 5.01 -3.46 -0.02 0.90 16 29 H 0.26 7.36 8.31 -40.82 -0.34 7.03 16 30 H 0.03 0.64 7.33 -51.92 -0.38 0.26 16 31 H 0.03 0.64 7.28 -51.93 -0.38 0.26 16 32 H 0.04 0.96 7.46 -51.93 -0.39 0.57 16 33 H 0.08 1.39 7.95 -51.93 -0.41 0.98 16 34 H 0.09 1.51 7.04 -51.93 -0.37 1.15 16 35 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.15 1.76 7.52 -52.49 -0.39 1.36 16 37 H 0.15 0.82 8.06 -52.49 -0.42 0.40 16 38 H 0.17 0.81 8.06 -52.49 -0.42 0.38 16 39 H 0.18 1.60 8.06 -52.49 -0.42 1.18 16 40 H 0.15 1.10 8.06 -52.49 -0.42 0.68 16 41 H 0.19 1.64 8.06 -52.49 -0.42 1.22 16 42 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.08 1.01 4.34 -51.93 -0.23 0.78 16 44 H 0.05 1.06 6.39 -51.93 -0.33 0.73 16 45 H 0.08 1.40 8.11 -51.93 -0.42 0.98 16 LS Contribution 364.74 15.07 5.50 5.50 Total: -1.00 -34.98 364.74 -9.51 -44.50 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -5.74 Total: 3.01 kcal Atomic # 6 Polarization: 7.90 SS G_CDS: -3.94 Total: 3.96 kcal Atomic # 7 Polarization: -61.72 SS G_CDS: -0.76 Total: -62.48 kcal Atomic # 8 Polarization: -10.70 SS G_CDS: 0.08 Total: -10.62 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -4.65 Total: 16.13 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.98 -9.51 -44.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827484879.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.239 kcal (2) G-P(sol) polarization free energy of solvation -34.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds