Wall clock time and date at job start Sat Apr 11 2020 06:18:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 119.99856 * 2 1 4 4 H 1.48500 * 109.47110 * 269.99832 * 3 2 1 5 5 H 1.48505 * 109.47321 * 29.99281 * 3 2 1 6 6 H 1.48499 * 109.47424 * 149.99614 * 3 2 1 7 7 C 1.37879 * 120.00090 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99925 * 0.02562 * 7 2 1 9 9 C 1.50697 * 119.99876 * 180.02562 * 7 2 1 10 10 N 1.46895 * 109.47046 * 185.28332 * 9 7 2 11 11 C 1.46895 * 111.00297 * 286.72281 * 10 9 7 12 12 C 1.53245 * 109.34382 * 187.25369 * 11 10 9 13 13 N 1.47077 * 108.51684 * 306.17383 * 12 11 10 14 14 C 1.34783 * 120.87897 * 231.18480 * 13 12 11 15 15 O 1.21581 * 120.00085 * 4.27008 * 14 13 12 16 16 C 1.47593 * 119.99875 * 184.27615 * 14 13 12 17 17 C 1.39979 * 120.59575 * 302.91221 * 16 14 13 18 18 C 1.38349 * 118.34434 * 180.24913 * 17 16 14 19 19 C 1.38384 * 119.45609 * 359.74846 * 18 17 16 20 20 N 1.31842 * 121.18518 * 359.97438 * 19 18 17 21 21 C 1.32256 * 121.80136 * 0.02562 * 20 19 18 22 22 N 1.39355 * 119.79787 * 179.97438 * 21 20 19 23 23 C 1.35937 * 126.10545 * 334.52186 * 22 21 20 24 24 C 1.35241 * 107.59876 * 179.80631 * 23 22 21 25 25 C 1.40010 * 107.97420 * 0.37189 * 24 23 22 26 26 N 1.30792 * 108.37835 * 359.62336 * 25 24 23 27 27 C 1.47082 * 118.24098 * 51.45561 * 13 12 11 28 28 C 1.46902 * 110.99912 * 51.02975 * 10 9 7 29 29 H 0.97000 * 120.00164 * 0.02562 * 1 2 3 30 30 H 1.09009 * 109.47063 * 65.28833 * 9 7 2 31 31 H 1.09002 * 109.47346 * 305.28846 * 9 7 2 32 32 H 1.08995 * 109.49229 * 67.29529 * 11 10 9 33 33 H 1.08997 * 109.49568 * 307.21397 * 11 10 9 34 34 H 1.08990 * 109.62880 * 186.46192 * 12 11 10 35 35 H 1.09000 * 109.62747 * 65.87447 * 12 11 10 36 36 H 1.07993 * 120.82503 * 359.97438 * 17 16 14 37 37 H 1.08000 * 120.26998 * 179.72894 * 18 17 16 38 38 H 1.08002 * 119.41267 * 180.02562 * 19 18 17 39 39 H 1.07994 * 126.20094 * 0.05999 * 23 22 21 40 40 H 1.07999 * 126.01194 * 180.22359 * 24 23 22 41 41 H 1.07992 * 125.80906 * 179.88973 * 25 24 23 42 42 H 1.09001 * 109.63006 * 68.25119 * 27 13 12 43 43 H 1.08998 * 109.62931 * 188.83102 * 27 13 12 44 44 H 1.09002 * 109.49026 * 292.69866 * 28 10 9 45 45 H 1.08999 * 109.49479 * 52.78522 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6528 0.6999 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0011 10 7 4.0013 -2.5731 -0.1259 11 6 3.8043 -3.3190 1.1241 12 6 4.4871 -4.6863 1.0123 13 7 3.9909 -5.3587 -0.1980 14 6 3.5139 -6.6181 -0.1433 15 8 3.4174 -7.1857 0.9275 16 6 3.1088 -7.3082 -1.3835 17 6 2.1379 -6.7514 -2.2241 18 6 1.7896 -7.4405 -3.3721 19 6 2.4082 -8.6452 -3.6567 20 7 3.3244 -9.1487 -2.8535 21 6 3.6940 -8.5311 -1.7439 22 7 4.6665 -9.1015 -0.9248 23 6 4.9661 -10.4246 -0.8391 24 6 5.9654 -10.5601 0.0620 25 6 6.2830 -9.2867 0.5496 26 7 5.5093 -8.4137 -0.0420 27 6 4.0345 -4.6225 -1.4705 28 6 3.3640 -3.2557 -1.2599 29 1 -0.4850 0.8400 -0.0004 30 1 3.8745 -0.7641 0.9348 31 1 3.8752 -0.6005 -0.8377 32 1 2.7377 -3.4584 1.3002 33 1 4.2403 -2.7614 1.9530 34 1 4.2482 -5.2877 1.8894 35 1 5.5664 -4.5518 0.9399 36 1 1.6690 -5.8096 -1.9802 37 1 1.0410 -7.0416 -4.0406 38 1 2.1361 -9.1824 -4.5533 39 1 4.4946 -11.2226 -1.3935 40 1 6.4341 -11.4877 0.3558 41 1 7.0411 -9.0628 1.2854 42 1 5.0710 -4.4820 -1.7769 43 1 3.4962 -5.1818 -2.2357 44 1 2.3035 -3.3960 -1.0506 45 1 3.4808 -2.6521 -2.1600 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000827484879.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:38 Heat of formation + Delta-G solvation = 98.359442 kcal Electronic energy + Delta-G solvation = -30065.620074 eV Core-core repulsion = 26085.265667 eV Total energy + Delta-G solvation = -3980.354408 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.71506 -41.50447 -40.47294 -38.96529 -36.10358 -34.78803 -34.45191 -33.88091 -32.03821 -31.39256 -30.70837 -30.18169 -27.49618 -25.72251 -25.26017 -24.58613 -23.76304 -22.47134 -22.01329 -21.72171 -20.40612 -19.42934 -18.95572 -18.44763 -17.91617 -17.23700 -16.68248 -16.48977 -16.33327 -16.07896 -15.89774 -15.83312 -15.60633 -15.22609 -15.04110 -14.65278 -14.51623 -14.43362 -14.35295 -13.85938 -13.79117 -13.70233 -13.52146 -13.10242 -13.01078 -12.53648 -12.36847 -12.17790 -11.96496 -11.87200 -11.80799 -11.63763 -11.48554 -11.30403 -11.03884 -10.79817 -10.65690 -10.21688 -9.78027 -9.39348 -9.05789 -8.32641 -6.38594 -0.56909 -0.18429 1.03146 1.12530 1.36278 1.38477 1.49845 1.55659 1.85245 1.89292 2.33367 2.53383 3.02693 3.11791 3.20047 3.28094 3.48387 3.77850 3.87866 3.93440 4.01352 4.03131 4.07298 4.21196 4.28068 4.33996 4.46462 4.50837 4.54510 4.69449 4.70548 4.79432 4.81862 4.95245 4.97991 5.01563 5.02209 5.04733 5.13227 5.31954 5.42241 5.46181 5.59310 6.00470 6.03140 6.24069 6.29447 6.33992 6.36410 6.67900 6.74720 7.04539 7.28796 8.83341 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017805 B = 0.003102 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.243737 B = 9024.981337 C =10071.420006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.013 3.987 3 Si 0.950 3.050 4 H -0.263 1.263 5 H -0.289 1.289 6 H -0.246 1.246 7 C -0.551 4.551 8 H 0.034 0.966 9 C 0.162 3.838 10 N -0.526 5.526 11 C 0.053 3.947 12 C 0.133 3.867 13 N -0.600 5.600 14 C 0.580 3.420 15 O -0.566 6.566 16 C -0.195 4.195 17 C -0.037 4.037 18 C -0.164 4.164 19 C 0.155 3.845 20 N -0.512 5.512 21 C 0.387 3.613 22 N -0.344 5.344 23 C 0.060 3.940 24 C -0.254 4.254 25 C 0.053 3.947 26 N -0.306 5.306 27 C 0.115 3.885 28 C 0.056 3.944 29 H 0.266 0.734 30 H 0.029 0.971 31 H 0.038 0.962 32 H 0.007 0.993 33 H 0.088 0.912 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.148 0.852 37 H 0.191 0.809 38 H 0.219 0.781 39 H 0.200 0.800 40 H 0.189 0.811 41 H 0.215 0.785 42 H 0.084 0.916 43 H 0.100 0.900 44 H 0.020 0.980 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.380 -19.689 -8.940 23.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.185 4.185 3 Si 0.773 3.227 4 H -0.188 1.188 5 H -0.215 1.215 6 H -0.170 1.170 7 C -0.590 4.590 8 H 0.052 0.948 9 C 0.034 3.966 10 N -0.249 5.249 11 C -0.076 4.076 12 C 0.011 3.989 13 N -0.332 5.332 14 C 0.368 3.632 15 O -0.446 6.446 16 C -0.203 4.203 17 C -0.063 4.063 18 C -0.184 4.184 19 C -0.003 4.003 20 N -0.225 5.225 21 C 0.159 3.841 22 N -0.123 5.123 23 C -0.079 4.079 24 C -0.281 4.281 25 C -0.136 4.136 26 N -0.124 5.124 27 C -0.007 4.007 28 C -0.073 4.073 29 H 0.075 0.925 30 H 0.047 0.953 31 H 0.056 0.944 32 H 0.025 0.975 33 H 0.106 0.894 34 H 0.098 0.902 35 H 0.105 0.895 36 H 0.166 0.834 37 H 0.208 0.792 38 H 0.235 0.765 39 H 0.217 0.783 40 H 0.206 0.794 41 H 0.232 0.768 42 H 0.102 0.898 43 H 0.118 0.882 44 H 0.038 0.962 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 10.749 -19.405 -8.809 23.868 hybrid contribution -1.408 0.974 0.917 1.942 sum 9.341 -18.431 -7.892 22.119 Atomic orbital electron populations 1.70078 1.08405 1.28200 1.52017 1.25911 0.95472 1.03415 0.93738 0.85671 0.79425 0.78232 0.79360 1.18800 1.21469 1.16973 1.21879 0.92670 0.93138 1.51332 0.94825 1.20071 0.91848 0.87413 0.97233 1.62422 1.56189 1.02851 1.03481 1.22287 0.97512 0.94192 0.93602 1.21601 0.98777 0.91171 0.87360 1.48019 1.61459 1.13158 1.10514 1.17951 0.76186 0.80959 0.88147 1.90709 1.56078 1.66373 1.31415 1.20438 1.03280 0.97930 0.98627 1.21942 0.92330 0.99414 0.92608 1.22581 1.02367 0.95953 0.97475 1.23606 0.87282 0.92563 0.96847 1.67128 1.17445 1.35508 1.02409 1.17636 0.88379 0.89173 0.88864 1.45765 1.28351 1.06192 1.31971 1.23372 0.98314 0.86082 1.00157 1.22037 1.02833 0.99800 1.03467 1.24732 0.98067 0.91772 0.99025 1.77556 1.06033 1.21902 1.06861 1.22217 1.02365 0.91230 0.84905 1.22338 0.95651 0.94129 0.95231 0.92522 0.95251 0.94360 0.97490 0.89372 0.90211 0.89533 0.83397 0.79221 0.76474 0.78283 0.79414 0.76813 0.89811 0.88191 0.96202 0.89324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.80 13.96 21.45 0.30 -57.50 16 2 C 0.01 0.72 5.47 84.65 0.46 1.19 16 3 Si 0.95 42.54 27.37 68.60 1.88 44.42 16 4 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 5 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 6 H -0.25 -10.25 6.70 99.48 0.67 -9.58 16 7 C -0.55 -30.24 8.37 25.60 0.21 -30.03 16 8 H 0.03 2.08 6.15 -2.91 -0.02 2.06 16 9 C 0.16 7.33 4.26 85.56 0.36 7.70 16 10 N -0.53 -20.75 4.83 -898.89 -4.34 -25.09 16 11 C 0.05 2.05 5.36 86.39 0.46 2.52 16 12 C 0.13 4.55 6.61 86.35 0.57 5.12 16 13 N -0.60 -20.36 3.00 -820.74 -2.46 -22.82 16 14 C 0.58 20.96 5.54 86.71 0.48 21.44 16 15 O -0.57 -24.35 15.14 -3.97 -0.06 -24.41 16 16 C -0.19 -5.80 4.97 -19.89 -0.10 -5.90 16 17 C -0.04 -0.83 7.57 22.72 0.17 -0.66 16 18 C -0.16 -2.30 10.09 22.33 0.23 -2.07 16 19 C 0.16 2.13 11.17 84.73 0.95 3.08 16 20 N -0.51 -11.20 10.00 -191.97 -1.92 -13.12 16 21 C 0.39 10.99 7.42 133.26 0.99 11.98 16 22 N -0.34 -10.18 3.60 -191.53 -0.69 -10.87 16 23 C 0.06 1.37 11.20 83.37 0.93 2.30 16 24 C -0.25 -4.93 10.80 22.01 0.24 -4.69 16 25 C 0.05 1.26 12.02 85.28 1.02 2.29 16 26 N -0.31 -9.70 9.39 -56.96 -0.53 -10.24 16 27 C 0.12 3.41 6.23 86.50 0.54 3.95 16 28 C 0.06 2.01 5.01 86.54 0.43 2.45 16 29 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 30 H 0.03 1.33 7.33 -2.38 -0.02 1.31 16 31 H 0.04 1.68 7.28 -2.39 -0.02 1.66 16 32 H 0.01 0.31 7.46 -2.39 -0.02 0.29 16 33 H 0.09 3.17 7.95 -2.39 -0.02 3.15 16 34 H 0.08 2.87 7.04 -2.39 -0.02 2.86 16 35 H 0.09 2.67 8.14 -2.39 -0.02 2.65 16 36 H 0.15 3.45 7.52 -2.91 -0.02 3.42 16 37 H 0.19 1.19 8.06 -2.91 -0.02 1.16 16 38 H 0.22 0.86 8.06 -2.91 -0.02 0.84 16 39 H 0.20 3.30 8.06 -2.91 -0.02 3.28 16 40 H 0.19 2.16 8.06 -2.91 -0.02 2.14 16 41 H 0.22 3.54 8.06 -2.91 -0.02 3.51 16 42 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 43 H 0.10 2.54 4.34 -2.39 -0.01 2.53 16 44 H 0.02 0.85 6.39 -2.39 -0.02 0.83 16 45 H 0.09 3.04 8.11 -2.39 -0.02 3.02 16 Total: -1.00 -80.95 364.74 1.11 -79.84 By element: Atomic # 1 Polarization: 18.14 SS G_CDS: 0.98 Total: 19.12 kcal Atomic # 6 Polarization: 12.70 SS G_CDS: 7.96 Total: 20.66 kcal Atomic # 7 Polarization: -129.99 SS G_CDS: -9.65 Total: -139.64 kcal Atomic # 8 Polarization: -24.35 SS G_CDS: -0.06 Total: -24.41 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 1.88 Total: 44.42 kcal Total: -80.95 1.11 -79.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827484879.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.200 kcal (2) G-P(sol) polarization free energy of solvation -80.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds