Wall clock time and date at job start Sat Apr 11 2020 06:18:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86799 * 119.99983 * 2 1 4 4 H 1.48502 * 109.47237 * 179.97438 * 3 2 1 5 5 H 1.48490 * 109.47344 * 300.00121 * 3 2 1 6 6 H 1.48505 * 109.46845 * 60.00065 * 3 2 1 7 7 C 1.37876 * 119.99760 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99672 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00355 * 0.02562 * 7 2 1 10 10 N 1.46899 * 109.47396 * 179.97438 * 9 7 2 11 11 C 1.46894 * 111.00053 * 169.99952 * 10 9 7 12 12 C 1.53242 * 109.34046 * 187.25594 * 11 10 9 13 13 N 1.47083 * 108.52094 * 306.17196 * 12 11 10 14 14 C 1.34777 * 120.87737 * 231.19093 * 13 12 11 15 15 O 1.21582 * 119.99538 * 183.80822 * 14 13 12 16 16 C 1.47658 * 120.00480 * 3.79992 * 14 13 12 17 17 C 1.40240 * 120.49499 * 311.19309 * 16 14 13 18 18 C 1.38024 * 118.35549 * 179.72578 * 17 16 14 19 19 C 1.39163 * 119.25212 * 0.49226 * 18 17 16 20 20 N 1.39495 * 119.52619 * 179.77186 * 19 18 17 21 21 C 1.37223 * 126.49829 * 184.98391 * 20 19 18 22 22 C 1.34584 * 106.82845 * 180.14111 * 21 20 19 23 23 N 1.34179 * 108.23449 * 359.61751 * 22 21 20 24 24 C 1.30460 * 109.38687 * 0.24146 * 23 22 21 25 25 N 1.32431 * 120.94057 * 359.49377 * 19 18 17 26 26 C 1.31631 * 121.80651 * 0.25611 * 25 19 18 27 27 C 1.47078 * 118.23942 * 51.45206 * 13 12 11 28 28 C 1.46904 * 110.99901 * 294.30295 * 10 9 7 29 29 H 0.97003 * 119.99748 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.46860 * 59.99570 * 9 7 2 31 31 H 1.08997 * 109.47081 * 300.00171 * 9 7 2 32 32 H 1.08999 * 109.49542 * 67.29790 * 11 10 9 33 33 H 1.09000 * 109.49185 * 307.21524 * 11 10 9 34 34 H 1.08994 * 109.63080 * 186.45813 * 12 11 10 35 35 H 1.08997 * 109.62708 * 65.88170 * 12 11 10 36 36 H 1.07999 * 120.82120 * 359.97200 * 17 16 14 37 37 H 1.07990 * 120.37207 * 180.26310 * 18 17 16 38 38 H 1.08007 * 126.58811 * 359.97438 * 21 20 19 39 39 H 1.08003 * 125.88632 * 179.88062 * 22 21 20 40 40 H 1.07996 * 125.73373 * 179.97438 * 24 23 22 41 41 H 1.07999 * 119.67895 * 179.97438 * 26 25 19 42 42 H 1.09000 * 109.62276 * 68.25326 * 27 13 12 43 43 H 1.08998 * 109.63038 * 188.83454 * 27 13 12 44 44 H 1.08993 * 109.48892 * 292.69989 * 28 10 9 45 45 H 1.08998 * 109.49465 * 52.78804 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0005 10 7 2.2057 -3.6157 0.0005 11 6 1.5212 -4.8935 0.2387 12 6 2.5638 -6.0032 0.4115 13 7 3.4617 -5.9862 -0.7533 14 6 3.7119 -7.1124 -1.4502 15 8 4.5098 -7.0950 -2.3674 16 6 3.0171 -8.3673 -1.0997 17 6 2.9651 -8.8040 0.2319 18 6 2.2992 -9.9805 0.5105 19 6 1.7149 -10.6943 -0.5315 20 7 1.0446 -11.8864 -0.2571 21 6 0.5028 -12.7486 -1.1770 22 6 -0.0475 -13.7625 -0.4838 23 7 0.1562 -13.5369 0.8231 24 6 0.8088 -12.4172 0.9727 25 7 1.7816 -10.2551 -1.7791 26 6 2.4021 -9.1362 -2.0885 27 6 4.0838 -4.7090 -1.1339 28 6 2.9768 -3.6491 -1.2494 29 1 -0.4850 0.8401 -0.0004 30 1 0.6247 -2.5570 -0.8897 31 1 0.6241 -2.5567 0.8902 32 1 0.8796 -5.1264 -0.6112 33 1 0.9160 -4.8190 1.1422 34 1 2.0632 -6.9694 0.4740 35 1 3.1393 -5.8265 1.3201 36 1 3.4312 -8.2319 1.0205 37 1 2.2355 -10.3448 1.5251 38 1 0.5134 -12.6341 -2.2509 39 1 -0.5607 -14.6135 -0.9068 40 1 1.1108 -11.9842 1.9149 41 1 2.4357 -8.8104 -3.1176 42 1 4.8027 -4.4103 -0.3709 43 1 4.5886 -4.8192 -2.0936 44 1 2.3149 -3.8993 -2.0784 45 1 3.4273 -2.6722 -1.4251 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000827485678.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:41 Heat of formation + Delta-G solvation = 98.117864 kcal Electronic energy + Delta-G solvation = -28626.196690 eV Core-core repulsion = 24645.831807 eV Total energy + Delta-G solvation = -3980.364883 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.79795 -41.07579 -39.58033 -37.65268 -34.91624 -34.51977 -33.36280 -32.46106 -31.24744 -30.48266 -29.77692 -28.36910 -25.94304 -25.01001 -24.58038 -23.32648 -22.44731 -21.69249 -21.35511 -20.85533 -19.43852 -19.14707 -17.65816 -16.96724 -16.53616 -16.29600 -16.09302 -15.74548 -15.25693 -14.86540 -14.78466 -14.58903 -14.38814 -14.29812 -14.10485 -13.97192 -13.86447 -13.79255 -13.60328 -13.10607 -12.87058 -12.40819 -12.09497 -11.40669 -11.37225 -11.18435 -10.95991 -10.87779 -10.72993 -10.66141 -10.60142 -10.54941 -10.42958 -10.01057 -9.89467 -9.35263 -9.27472 -8.93229 -8.68688 -8.53836 -7.46557 -6.13508 -4.15748 -0.07002 0.54149 1.64639 1.93293 2.45113 2.68538 2.81353 3.22439 3.24335 3.32399 3.36228 3.66283 3.95046 4.08208 4.20285 4.23206 4.32239 4.36900 4.62373 4.69164 4.92713 4.99845 5.02991 5.11666 5.17486 5.24586 5.26675 5.32524 5.35895 5.46801 5.64175 5.67107 5.73488 5.82690 5.84332 6.05119 6.22100 6.23242 6.38929 6.54396 6.61900 7.10508 7.14252 7.17386 7.27747 7.52177 7.65441 7.89700 7.93009 8.01392 8.37197 8.91632 9.49340 10.97274 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.021154 B = 0.002143 C = 0.002026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.334387 B =13062.293730 C =13815.803736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.899 3.101 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.510 4.510 8 H 0.065 0.935 9 C 0.194 3.806 10 N -0.535 5.535 11 C 0.040 3.960 12 C 0.103 3.897 13 N -0.597 5.597 14 C 0.562 3.438 15 O -0.535 6.535 16 C -0.182 4.182 17 C -0.016 4.016 18 C -0.183 4.183 19 C 0.361 3.639 20 N -0.413 5.413 21 C -0.023 4.023 22 C -0.030 4.030 23 N -0.477 5.477 24 C 0.195 3.805 25 N -0.498 5.498 26 C 0.187 3.813 27 C 0.115 3.885 28 C 0.050 3.950 29 H 0.262 0.738 30 H -0.009 1.009 31 H 0.032 0.968 32 H 0.027 0.973 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.156 0.844 37 H 0.151 0.849 38 H 0.183 0.817 39 H 0.177 0.823 40 H 0.214 0.786 41 H 0.176 0.824 42 H 0.077 0.923 43 H 0.091 0.909 44 H 0.026 0.974 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.784 -22.397 0.887 22.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.146 4.146 3 Si 0.726 3.274 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.549 4.549 8 H 0.083 0.917 9 C 0.069 3.931 10 N -0.260 5.260 11 C -0.090 4.090 12 C -0.020 4.020 13 N -0.329 5.329 14 C 0.349 3.651 15 O -0.413 6.413 16 C -0.188 4.188 17 C -0.043 4.043 18 C -0.205 4.205 19 C 0.132 3.868 20 N -0.096 5.096 21 C -0.152 4.152 22 C -0.174 4.174 23 N -0.194 5.194 24 C -0.086 4.086 25 N -0.209 5.209 26 C 0.028 3.972 27 C -0.006 4.006 28 C -0.079 4.079 29 H 0.071 0.929 30 H 0.009 0.991 31 H 0.050 0.950 32 H 0.046 0.954 33 H 0.101 0.899 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.174 0.826 37 H 0.169 0.831 38 H 0.201 0.799 39 H 0.195 0.805 40 H 0.230 0.770 41 H 0.193 0.807 42 H 0.096 0.904 43 H 0.109 0.891 44 H 0.044 0.956 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 3.726 -23.146 0.734 23.456 hybrid contribution 0.239 1.868 -0.608 1.979 sum 3.965 -21.278 0.127 21.644 Atomic orbital electron populations 1.69966 1.06103 1.26842 1.50723 1.25003 0.94883 0.99440 0.95284 0.86429 0.80056 0.83297 0.77569 1.19595 1.21081 1.20980 1.21157 0.93525 0.89791 1.50427 0.91694 1.19735 0.89961 0.87158 0.96248 1.62106 1.27973 1.02488 1.33463 1.22390 0.94710 0.90787 1.01117 1.22235 0.92118 0.99434 0.88209 1.48186 1.46167 1.08562 1.29969 1.17909 0.82024 0.82853 0.82328 1.90816 1.35114 1.85052 1.30318 1.21029 1.04015 0.98606 0.95163 1.21734 0.93073 0.93717 0.95742 1.21490 1.02235 0.96877 0.99928 1.18344 0.91958 0.85998 0.90496 1.43145 1.41737 1.15923 1.08749 1.23001 1.02831 0.92377 0.97036 1.22438 1.05255 1.00689 0.89043 1.70347 1.15724 1.14042 1.19240 1.25420 1.01702 0.92682 0.88830 1.67070 1.19495 1.15737 1.18607 1.22681 0.88253 0.86432 0.99824 1.22052 0.95903 0.80967 1.01712 1.22445 0.95053 0.99218 0.91163 0.92868 0.99068 0.94994 0.95444 0.89870 0.90041 0.90017 0.82606 0.83101 0.79945 0.80548 0.76991 0.80681 0.90436 0.89105 0.95563 0.88216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.69 13.29 55.43 0.74 -24.96 16 2 C 0.06 1.51 5.46 -17.82 -0.10 1.41 16 3 Si 0.90 20.79 29.54 -169.99 -5.02 15.77 16 4 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 5 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.51 -13.48 8.41 -34.44 -0.29 -13.77 16 8 H 0.06 1.69 7.13 -52.49 -0.37 1.31 16 9 C 0.19 4.69 4.72 -4.98 -0.02 4.67 16 10 N -0.54 -10.28 4.62 -235.47 -1.09 -11.37 16 11 C 0.04 0.60 5.62 -3.70 -0.02 0.58 16 12 C 0.10 1.18 5.44 -3.60 -0.02 1.16 16 13 N -0.60 -7.81 3.00 -173.36 -0.52 -8.33 16 14 C 0.56 7.36 7.28 -12.41 -0.09 7.27 16 15 O -0.54 -8.68 16.50 5.29 0.09 -8.59 16 16 C -0.18 -1.86 5.06 -104.81 -0.53 -2.39 16 17 C -0.02 -0.12 7.49 -38.91 -0.29 -0.41 16 18 C -0.18 -1.25 9.48 -39.32 -0.37 -1.62 16 19 C 0.36 3.31 7.49 -154.50 -1.16 2.15 16 20 N -0.41 -3.75 2.98 -63.80 -0.19 -3.94 16 21 C -0.02 -0.21 11.16 -16.43 -0.18 -0.39 16 22 C -0.03 -0.27 11.85 -17.82 -0.21 -0.48 16 23 N -0.48 -4.93 11.24 -14.45 -0.16 -5.09 16 24 C 0.20 1.60 11.89 -89.52 -1.06 0.54 16 25 N -0.50 -5.17 9.87 -11.99 -0.12 -5.29 16 26 C 0.19 1.91 10.89 -17.15 -0.19 1.72 16 27 C 0.12 1.67 6.62 -3.36 -0.02 1.65 16 28 C 0.05 0.89 5.47 -3.46 -0.02 0.87 16 29 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 30 H -0.01 -0.22 8.12 -51.93 -0.42 -0.65 16 31 H 0.03 0.83 7.97 -51.93 -0.41 0.41 16 32 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.08 1.22 7.99 -51.93 -0.41 0.81 16 34 H 0.08 0.73 4.63 -51.93 -0.24 0.49 16 35 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.16 0.86 6.99 -52.49 -0.37 0.50 16 37 H 0.15 0.53 6.75 -52.49 -0.35 0.18 16 38 H 0.18 1.38 8.06 -52.48 -0.42 0.95 16 39 H 0.18 1.12 8.06 -52.48 -0.42 0.70 16 40 H 0.21 0.88 7.05 -52.49 -0.37 0.51 16 41 H 0.18 1.62 8.06 -52.49 -0.42 1.20 16 42 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.09 1.31 7.08 -51.93 -0.37 0.95 16 44 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.10 1.90 6.67 -51.93 -0.35 1.55 16 LS Contribution 372.10 15.07 5.61 5.61 Total: -1.00 -33.44 372.10 -11.01 -44.45 By element: Atomic # 1 Polarization: 4.55 SS G_CDS: -5.76 Total: -1.21 kcal Atomic # 6 Polarization: 7.53 SS G_CDS: -4.58 Total: 2.95 kcal Atomic # 7 Polarization: -57.64 SS G_CDS: -1.34 Total: -58.98 kcal Atomic # 8 Polarization: -8.68 SS G_CDS: 0.09 Total: -8.59 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.44 -11.01 -44.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827485678.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.571 kcal (2) G-P(sol) polarization free energy of solvation -33.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.453 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds