Wall clock time and date at job start Sat Apr 11 2020 06:18:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86799 * 119.99983 * 2 1 4 4 H 1.48502 * 109.47237 * 179.97438 * 3 2 1 5 5 H 1.48490 * 109.47344 * 300.00121 * 3 2 1 6 6 H 1.48505 * 109.46845 * 60.00065 * 3 2 1 7 7 C 1.37876 * 119.99760 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99672 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00355 * 0.02562 * 7 2 1 10 10 N 1.46899 * 109.47396 * 179.97438 * 9 7 2 11 11 C 1.46894 * 111.00053 * 169.99952 * 10 9 7 12 12 C 1.53242 * 109.34046 * 187.25594 * 11 10 9 13 13 N 1.47083 * 108.52094 * 306.17196 * 12 11 10 14 14 C 1.34777 * 120.87737 * 231.19093 * 13 12 11 15 15 O 1.21582 * 119.99538 * 183.80822 * 14 13 12 16 16 C 1.47658 * 120.00480 * 3.79992 * 14 13 12 17 17 C 1.40240 * 120.49499 * 311.19309 * 16 14 13 18 18 C 1.38024 * 118.35549 * 179.72578 * 17 16 14 19 19 C 1.39163 * 119.25212 * 0.49226 * 18 17 16 20 20 N 1.39495 * 119.52619 * 179.77186 * 19 18 17 21 21 C 1.37223 * 126.49829 * 184.98391 * 20 19 18 22 22 C 1.34584 * 106.82845 * 180.14111 * 21 20 19 23 23 N 1.34179 * 108.23449 * 359.61751 * 22 21 20 24 24 C 1.30460 * 109.38687 * 0.24146 * 23 22 21 25 25 N 1.32431 * 120.94057 * 359.49377 * 19 18 17 26 26 C 1.31631 * 121.80651 * 0.25611 * 25 19 18 27 27 C 1.47078 * 118.23942 * 51.45206 * 13 12 11 28 28 C 1.46904 * 110.99901 * 294.30295 * 10 9 7 29 29 H 0.97003 * 119.99748 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.46860 * 59.99570 * 9 7 2 31 31 H 1.08997 * 109.47081 * 300.00171 * 9 7 2 32 32 H 1.08999 * 109.49542 * 67.29790 * 11 10 9 33 33 H 1.09000 * 109.49185 * 307.21524 * 11 10 9 34 34 H 1.08994 * 109.63080 * 186.45813 * 12 11 10 35 35 H 1.08997 * 109.62708 * 65.88170 * 12 11 10 36 36 H 1.07999 * 120.82120 * 359.97200 * 17 16 14 37 37 H 1.07990 * 120.37207 * 180.26310 * 18 17 16 38 38 H 1.08007 * 126.58811 * 359.97438 * 21 20 19 39 39 H 1.08003 * 125.88632 * 179.88062 * 22 21 20 40 40 H 1.07996 * 125.73373 * 179.97438 * 24 23 22 41 41 H 1.07999 * 119.67895 * 179.97438 * 26 25 19 42 42 H 1.09000 * 109.62276 * 68.25326 * 27 13 12 43 43 H 1.08998 * 109.63038 * 188.83454 * 27 13 12 44 44 H 1.08993 * 109.48892 * 292.69989 * 28 10 9 45 45 H 1.08998 * 109.49465 * 52.78804 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0005 10 7 2.2057 -3.6157 0.0005 11 6 1.5212 -4.8935 0.2387 12 6 2.5638 -6.0032 0.4115 13 7 3.4617 -5.9862 -0.7533 14 6 3.7119 -7.1124 -1.4502 15 8 4.5098 -7.0950 -2.3674 16 6 3.0171 -8.3673 -1.0997 17 6 2.9651 -8.8040 0.2319 18 6 2.2992 -9.9805 0.5105 19 6 1.7149 -10.6943 -0.5315 20 7 1.0446 -11.8864 -0.2571 21 6 0.5028 -12.7486 -1.1770 22 6 -0.0475 -13.7625 -0.4838 23 7 0.1562 -13.5369 0.8231 24 6 0.8088 -12.4172 0.9727 25 7 1.7816 -10.2551 -1.7791 26 6 2.4021 -9.1362 -2.0885 27 6 4.0838 -4.7090 -1.1339 28 6 2.9768 -3.6491 -1.2494 29 1 -0.4850 0.8401 -0.0004 30 1 0.6247 -2.5570 -0.8897 31 1 0.6241 -2.5567 0.8902 32 1 0.8796 -5.1264 -0.6112 33 1 0.9160 -4.8190 1.1422 34 1 2.0632 -6.9694 0.4740 35 1 3.1393 -5.8265 1.3201 36 1 3.4312 -8.2319 1.0205 37 1 2.2355 -10.3448 1.5251 38 1 0.5134 -12.6341 -2.2509 39 1 -0.5607 -14.6135 -0.9068 40 1 1.1108 -11.9842 1.9149 41 1 2.4357 -8.8104 -3.1176 42 1 4.8027 -4.4103 -0.3709 43 1 4.5886 -4.8192 -2.0936 44 1 2.3149 -3.8993 -2.0784 45 1 3.4273 -2.6722 -1.4251 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000827485678.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:40 Heat of formation + Delta-G solvation = 77.480223 kcal Electronic energy + Delta-G solvation = -28627.091605 eV Core-core repulsion = 24645.831807 eV Total energy + Delta-G solvation = -3981.259799 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.42904 -41.91948 -40.52890 -38.96056 -36.15188 -35.39302 -34.49645 -33.95152 -32.26977 -31.39281 -30.44702 -29.92480 -27.43169 -25.97255 -25.31047 -24.46875 -23.92923 -22.69300 -22.08123 -21.86008 -20.42598 -19.88470 -18.67503 -18.46328 -17.73514 -17.36754 -16.84479 -16.66383 -16.36737 -16.25328 -16.02040 -15.66502 -15.41212 -15.28597 -14.99209 -14.92573 -14.83731 -14.70351 -14.35549 -14.26375 -14.06052 -13.74750 -13.50455 -13.08803 -12.76940 -12.61674 -12.42510 -12.35908 -12.20258 -11.88457 -11.76728 -11.40532 -11.31071 -11.26737 -11.07077 -10.80321 -10.62771 -9.99827 -9.83493 -9.55443 -9.08659 -8.21547 -6.31108 -0.75738 -0.06801 0.97266 1.30461 1.41736 1.43161 1.49827 1.55758 1.83059 2.04814 2.40009 2.52236 3.00769 3.11105 3.19694 3.24867 3.41070 3.58782 3.65544 3.83798 3.90340 3.99550 4.06480 4.21640 4.22969 4.37789 4.40310 4.43898 4.51297 4.56276 4.68358 4.70220 4.74816 4.82132 4.93016 4.99241 5.05062 5.11791 5.17136 5.21902 5.38247 5.61395 5.63726 6.01171 6.02242 6.14554 6.29868 6.51763 6.56381 6.85075 6.89433 6.90493 7.38955 8.89664 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.021154 B = 0.002143 C = 0.002026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.334387 B =13062.293730 C =13815.803736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.001 3.999 3 Si 0.968 3.032 4 H -0.260 1.260 5 H -0.283 1.283 6 H -0.280 1.280 7 C -0.520 4.520 8 H 0.068 0.932 9 C 0.208 3.792 10 N -0.536 5.536 11 C 0.034 3.966 12 C 0.113 3.887 13 N -0.599 5.599 14 C 0.567 3.433 15 O -0.572 6.572 16 C -0.194 4.194 17 C -0.008 4.008 18 C -0.165 4.165 19 C 0.348 3.652 20 N -0.420 5.420 21 C -0.041 4.041 22 C -0.038 4.038 23 N -0.512 5.512 24 C 0.203 3.797 25 N -0.518 5.518 26 C 0.177 3.823 27 C 0.128 3.872 28 C 0.054 3.946 29 H 0.264 0.736 30 H -0.043 1.043 31 H 0.011 0.989 32 H 0.014 0.986 33 H 0.091 0.909 34 H 0.114 0.886 35 H 0.105 0.895 36 H 0.186 0.814 37 H 0.193 0.807 38 H 0.187 0.813 39 H 0.193 0.807 40 H 0.253 0.747 41 H 0.172 0.828 42 H 0.090 0.910 43 H 0.090 0.910 44 H 0.010 0.990 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.118 -23.429 3.057 24.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.197 4.197 3 Si 0.793 3.207 4 H -0.184 1.184 5 H -0.209 1.209 6 H -0.205 1.205 7 C -0.559 4.559 8 H 0.086 0.914 9 C 0.082 3.918 10 N -0.260 5.260 11 C -0.095 4.095 12 C -0.008 4.008 13 N -0.331 5.331 14 C 0.356 3.644 15 O -0.452 6.452 16 C -0.200 4.200 17 C -0.034 4.034 18 C -0.187 4.187 19 C 0.120 3.880 20 N -0.102 5.102 21 C -0.169 4.169 22 C -0.181 4.181 23 N -0.229 5.229 24 C -0.078 4.078 25 N -0.229 5.229 26 C 0.019 3.981 27 C 0.005 3.995 28 C -0.075 4.075 29 H 0.072 0.928 30 H -0.026 1.026 31 H 0.029 0.971 32 H 0.033 0.967 33 H 0.109 0.891 34 H 0.132 0.868 35 H 0.123 0.877 36 H 0.203 0.797 37 H 0.210 0.790 38 H 0.204 0.796 39 H 0.210 0.790 40 H 0.269 0.731 41 H 0.189 0.811 42 H 0.108 0.892 43 H 0.108 0.892 44 H 0.028 0.972 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 5.061 -24.215 2.909 24.908 hybrid contribution -0.237 2.086 -1.291 2.464 sum 4.824 -22.129 1.618 22.706 Atomic orbital electron populations 1.70091 1.07741 1.27802 1.51923 1.25905 0.95701 1.03212 0.94932 0.85353 0.79167 0.78716 0.77501 1.18417 1.20900 1.20535 1.21497 0.93795 0.90864 1.49710 0.91422 1.19375 0.90033 0.88852 0.93543 1.62025 1.26974 1.02993 1.34051 1.22557 0.95952 0.90062 1.00881 1.22329 0.91136 0.99160 0.88213 1.48222 1.46274 1.08051 1.30533 1.18248 0.81364 0.83495 0.81320 1.90797 1.36817 1.85744 1.31820 1.20817 1.04960 0.97541 0.96712 1.22044 0.92423 0.94000 0.94903 1.21892 1.00030 0.95668 1.01099 1.18700 0.92213 0.86236 0.90831 1.43280 1.41887 1.15970 1.09102 1.23185 1.03442 0.92759 0.97546 1.22779 1.05148 1.01226 0.88938 1.70358 1.17283 1.15498 1.19804 1.26237 1.00030 0.91859 0.89674 1.67011 1.20104 1.15889 1.19920 1.22640 0.88828 0.86682 0.99994 1.21808 0.94598 0.80777 1.02300 1.22381 0.95432 0.99664 0.89999 0.92766 1.02566 0.97052 0.96747 0.89105 0.86827 0.87719 0.79723 0.78971 0.79566 0.79009 0.73108 0.81111 0.89178 0.89193 0.97209 0.90047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.72 13.29 21.45 0.28 -54.44 16 2 C 0.00 0.03 5.46 84.65 0.46 0.49 16 3 Si 0.97 42.78 29.54 68.60 2.03 44.80 16 4 H -0.26 -10.93 7.11 99.48 0.71 -10.23 16 5 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 6 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 7 C -0.52 -27.91 8.41 25.60 0.22 -27.70 16 8 H 0.07 3.52 7.13 -2.91 -0.02 3.50 16 9 C 0.21 10.42 4.72 85.56 0.40 10.82 16 10 N -0.54 -20.64 4.62 -898.89 -4.15 -24.79 16 11 C 0.03 1.02 5.62 86.39 0.49 1.50 16 12 C 0.11 2.24 5.44 86.35 0.47 2.71 16 13 N -0.60 -14.55 3.00 -820.66 -2.46 -17.01 16 14 C 0.57 14.01 7.28 86.73 0.63 14.65 16 15 O -0.57 -18.31 16.50 -3.97 -0.07 -18.37 16 16 C -0.19 -3.56 5.06 -19.99 -0.10 -3.66 16 17 C -0.01 -0.08 7.49 22.71 0.17 0.09 16 18 C -0.17 -1.50 9.48 22.44 0.21 -1.29 16 19 C 0.35 5.51 7.49 132.89 1.00 6.50 16 20 N -0.42 -6.70 2.98 -355.77 -1.06 -7.76 16 21 C -0.04 -0.69 11.16 83.01 0.93 0.24 16 22 C -0.04 -0.64 11.85 83.50 0.99 0.35 16 23 N -0.51 -9.67 11.24 -199.64 -2.24 -11.92 16 24 C 0.20 2.72 11.89 179.97 2.14 4.86 16 25 N -0.52 -10.19 9.87 -191.85 -1.89 -12.09 16 26 C 0.18 3.49 10.89 85.04 0.93 4.42 16 27 C 0.13 3.58 6.62 86.50 0.57 4.16 16 28 C 0.05 1.95 5.47 86.54 0.47 2.42 16 29 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 30 H -0.04 -2.43 8.12 -2.38 -0.02 -2.45 16 31 H 0.01 0.61 7.97 -2.39 -0.02 0.59 16 32 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.09 2.55 7.99 -2.39 -0.02 2.53 16 34 H 0.11 1.55 4.63 -2.39 -0.01 1.54 16 35 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.19 0.95 6.99 -2.91 -0.02 0.93 16 37 H 0.19 0.10 6.75 -2.92 -0.02 0.08 16 38 H 0.19 2.81 8.06 -2.91 -0.02 2.79 16 39 H 0.19 2.31 8.06 -2.91 -0.02 2.29 16 40 H 0.25 0.84 7.05 -2.91 -0.02 0.82 16 41 H 0.17 3.29 8.06 -2.91 -0.02 3.26 16 42 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 43 H 0.09 2.57 7.08 -2.39 -0.02 2.56 16 44 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 45 H 0.08 3.18 6.67 -2.39 -0.02 3.17 16 Total: -1.00 -75.57 372.10 1.42 -74.14 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: 1.02 Total: 6.88 kcal Atomic # 6 Polarization: 10.58 SS G_CDS: 9.97 Total: 20.55 kcal Atomic # 7 Polarization: -116.48 SS G_CDS: -11.53 Total: -128.00 kcal Atomic # 8 Polarization: -18.31 SS G_CDS: -0.07 Total: -18.37 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.80 kcal Total: -75.57 1.42 -74.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827485678.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.624 kcal (2) G-P(sol) polarization free energy of solvation -75.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.144 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds