Wall clock time and date at job start Sat Apr 11 2020 06:18:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 119.99849 * 2 1 4 4 H 1.48505 * 109.47479 * 239.99558 * 3 2 1 5 5 H 1.48504 * 109.47362 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47185 * 119.99287 * 3 2 1 7 7 C 1.37870 * 120.00362 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00512 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99998 * 0.02562 * 7 2 1 10 10 H 1.08999 * 110.81654 * 56.66347 * 9 7 2 11 11 C 1.54886 * 110.75637 * 293.32754 * 9 7 2 12 12 C 1.54263 * 104.19850 * 203.74374 * 11 9 7 13 13 C 1.53875 * 106.60020 * 23.60481 * 12 11 9 14 14 H 1.08992 * 110.07421 * 240.69754 * 13 12 11 15 15 N 1.46506 * 110.03092 * 119.28469 * 13 12 11 16 16 C 1.34773 * 119.99546 * 87.83937 * 15 13 12 17 17 O 1.21584 * 120.00072 * 359.97438 * 16 15 13 18 18 N 1.34783 * 119.99960 * 179.97438 * 16 15 13 19 19 C 1.39949 * 120.00013 * 175.38182 * 18 16 15 20 20 C 1.38932 * 120.03538 * 214.82427 * 19 18 16 21 21 C 1.38133 * 120.06302 * 179.72492 * 20 19 18 22 22 C 1.38185 * 120.13577 * 0.55042 * 21 20 19 23 23 C 1.38864 * 120.07456 * 359.72544 * 22 21 20 24 24 N 1.40207 * 120.03345 * 179.97438 * 23 22 21 25 25 N 1.28594 * 124.60958 * 179.71952 * 24 23 22 26 26 C 1.31422 * 108.72631 * 179.83279 * 25 24 23 27 27 C 1.39736 * 105.88336 * 0.41235 * 26 25 24 28 28 N 1.28593 * 124.61032 * 0.02562 * 24 23 22 29 29 C 1.38725 * 120.03878 * 35.10042 * 19 18 16 30 30 C 1.54270 * 106.59506 * 0.02562 * 13 12 11 31 31 H 0.96995 * 120.00289 * 0.02562 * 1 2 3 32 32 H 1.09004 * 110.48909 * 322.41966 * 11 9 7 33 33 H 1.09000 * 110.48730 * 85.06122 * 11 9 7 34 34 H 1.09000 * 110.03139 * 264.32306 * 12 11 9 35 35 H 1.08995 * 110.03983 * 142.89291 * 12 11 9 36 36 H 0.96993 * 120.00060 * 267.83714 * 15 13 12 37 37 H 0.96997 * 119.99484 * 355.38561 * 18 16 15 38 38 H 1.08003 * 119.96691 * 359.97438 * 20 19 18 39 39 H 1.08000 * 119.93328 * 180.27977 * 21 20 19 40 40 H 1.08002 * 119.96189 * 179.74859 * 22 21 20 41 41 H 1.07998 * 127.06148 * 180.13284 * 26 25 24 42 42 H 1.08002 * 127.06145 * 179.71144 * 27 26 25 43 43 H 1.08007 * 120.06705 * 359.97438 * 29 19 18 44 44 H 1.09006 * 110.48156 * 217.70962 * 30 13 12 45 45 H 1.08999 * 110.60235 * 95.12117 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1027 1.6965 1.2126 7 6 2.0045 -1.1939 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.5729 -2.5548 -0.8509 11 6 0.4795 -2.6875 1.3302 12 6 0.2963 -4.2146 1.4484 13 6 1.4099 -4.8576 0.6032 14 1 0.9742 -5.4600 -0.1938 15 7 2.2657 -5.6912 1.4513 16 6 1.9464 -6.9825 1.6682 17 8 0.9480 -7.4554 1.1604 18 7 2.7339 -7.7496 2.4479 19 6 2.3526 -9.0614 2.7520 20 6 2.6525 -9.6021 3.9961 21 6 2.2715 -10.8949 4.2988 22 6 1.6013 -11.6580 3.3619 23 6 1.3036 -11.1252 2.1145 24 7 0.6240 -11.9005 1.1643 25 7 0.3000 -11.4953 -0.0123 26 6 -0.3197 -12.4704 -0.6386 27 6 -0.3658 -13.5362 0.2639 28 7 0.2350 -13.1116 1.3530 29 6 1.6799 -9.8252 1.8094 30 6 2.2313 -3.6986 0.0015 31 1 -0.4850 0.8400 -0.0004 32 1 1.0644 -2.3075 2.1679 33 1 -0.4890 -2.1896 1.2831 34 1 -0.6806 -4.5045 1.0614 35 1 0.3925 -4.5229 2.4894 36 1 3.0619 -5.3138 1.8567 37 1 3.5648 -7.3924 2.7984 38 1 3.1806 -9.0097 4.7287 39 1 2.5018 -11.3115 5.2683 40 1 1.3083 -12.6699 3.6001 41 1 -0.7164 -12.4504 -1.6429 42 1 -0.8055 -14.5090 0.1004 43 1 1.4491 -9.4085 0.8400 44 1 2.5411 -3.9386 -1.0156 45 1 3.1002 -3.4814 0.6228 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880335095.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:43 Heat of formation + Delta-G solvation = 92.322751 kcal Electronic energy + Delta-G solvation = -28316.123782 eV Core-core repulsion = 24335.507603 eV Total energy + Delta-G solvation = -3980.616178 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -44.80493 -41.82995 -40.13718 -38.78658 -36.19884 -35.37225 -34.47512 -33.85388 -33.61000 -31.06617 -30.38530 -29.91683 -28.50950 -25.87463 -25.32946 -24.68902 -23.37330 -22.37744 -21.89197 -21.27645 -20.92317 -19.84876 -19.24227 -18.50650 -17.78552 -17.51081 -17.26147 -16.84183 -16.56783 -16.43406 -16.16927 -15.84603 -15.59625 -15.49937 -15.07984 -14.65225 -14.42876 -14.08175 -14.00526 -13.66167 -13.05436 -13.01294 -12.88364 -12.77586 -12.64798 -12.54056 -12.44141 -12.11252 -11.90801 -11.87478 -11.65488 -11.54001 -11.41731 -11.20763 -11.07807 -11.04141 -10.83453 -10.44923 -10.11091 -9.57803 -9.15280 -8.09475 -6.19534 -0.32402 0.19792 1.09774 1.20147 1.44487 1.45586 1.48506 1.51910 1.53539 2.00114 2.45704 2.69973 3.06393 3.21846 3.25478 3.87199 3.89075 3.95395 4.00455 4.02896 4.09677 4.18564 4.28754 4.34371 4.52186 4.66736 4.72072 4.77735 4.89668 4.94382 5.00823 5.05123 5.06744 5.16168 5.19627 5.24981 5.26535 5.31961 5.38343 5.39736 5.64211 5.65778 5.66514 5.89405 5.95129 5.97359 5.99426 6.37941 6.91322 6.96757 7.24888 7.44463 7.48359 8.99572 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.021242 B = 0.002043 C = 0.001920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.825933 B =13704.368340 C =14576.860076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.009 3.991 3 Si 0.954 3.046 4 H -0.271 1.271 5 H -0.290 1.290 6 H -0.267 1.267 7 C -0.527 4.527 8 H 0.062 0.938 9 C 0.041 3.959 10 H 0.000 1.000 11 C -0.091 4.091 12 C -0.123 4.123 13 C 0.170 3.830 14 H 0.068 0.932 15 N -0.713 5.713 16 C 0.697 3.303 17 O -0.615 6.615 18 N -0.670 5.670 19 C 0.173 3.827 20 C -0.126 4.126 21 C -0.068 4.068 22 C -0.128 4.128 23 C 0.131 3.869 24 N -0.122 5.122 25 N -0.328 5.328 26 C -0.020 4.020 27 C -0.009 4.009 28 N -0.311 5.311 29 C -0.136 4.136 30 C -0.106 4.106 31 H 0.259 0.741 32 H 0.043 0.957 33 H 0.033 0.967 34 H 0.046 0.954 35 H 0.063 0.937 36 H 0.413 0.587 37 H 0.430 0.570 38 H 0.173 0.827 39 H 0.183 0.817 40 H 0.149 0.851 41 H 0.236 0.764 42 H 0.247 0.753 43 H 0.125 0.875 44 H 0.060 0.940 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.183 -26.480 8.936 28.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.190 4.190 3 Si 0.780 3.220 4 H -0.196 1.196 5 H -0.216 1.216 6 H -0.192 1.192 7 C -0.565 4.565 8 H 0.080 0.920 9 C 0.022 3.978 10 H 0.018 0.982 11 C -0.130 4.130 12 C -0.162 4.162 13 C 0.065 3.935 14 H 0.086 0.914 15 N -0.368 5.368 16 C 0.397 3.603 17 O -0.494 6.494 18 N -0.320 5.320 19 C 0.077 3.923 20 C -0.147 4.147 21 C -0.087 4.087 22 C -0.149 4.149 23 C 0.041 3.959 24 N -0.013 5.013 25 N -0.166 5.166 26 C -0.203 4.203 27 C -0.192 4.192 28 N -0.150 5.150 29 C -0.160 4.160 30 C -0.144 4.144 31 H 0.068 0.932 32 H 0.062 0.938 33 H 0.052 0.948 34 H 0.065 0.935 35 H 0.082 0.918 36 H 0.251 0.749 37 H 0.269 0.731 38 H 0.191 0.809 39 H 0.200 0.800 40 H 0.166 0.834 41 H 0.252 0.748 42 H 0.263 0.737 43 H 0.143 0.857 44 H 0.079 0.921 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 6.792 -25.938 9.345 28.394 hybrid contribution -0.113 1.075 -1.015 1.483 sum 6.679 -24.863 8.330 27.058 Atomic orbital electron populations 1.70095 1.07432 1.27223 1.51451 1.25805 0.95592 1.02605 0.94976 0.85670 0.78312 0.79047 0.78960 1.19639 1.21631 1.19239 1.21454 0.93187 0.91494 1.50335 0.92022 1.19529 0.92962 0.92313 0.93031 0.98215 1.22115 0.99421 0.92402 0.99043 1.22518 0.97853 0.96386 0.99485 1.21368 0.90466 0.90371 0.91321 0.91384 1.45191 1.30069 1.08273 1.53276 1.16168 0.82737 0.81765 0.79581 1.90947 1.29728 1.73621 1.55099 1.42348 1.25520 1.10967 1.53116 1.17379 0.98292 0.83380 0.93268 1.21471 1.02503 0.97207 0.93552 1.21287 0.94907 0.92487 0.99975 1.21141 1.01022 1.02247 0.90508 1.17547 0.99216 0.90358 0.88811 1.45020 1.39650 1.07608 1.09059 1.74242 1.17315 1.29347 0.95742 1.25716 1.01358 0.89377 1.03851 1.25737 1.01525 1.03546 0.88433 1.74004 1.16024 0.96997 1.27936 1.20897 1.02068 0.91577 1.01440 1.22574 0.98520 0.93359 0.99958 0.93222 0.93776 0.94823 0.93477 0.91791 0.74940 0.73052 0.80910 0.79977 0.83355 0.74805 0.73678 0.85673 0.92097 0.90228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.76 12.41 21.44 0.27 -53.49 16 2 C 0.01 0.48 5.36 84.65 0.45 0.94 16 3 Si 0.95 42.73 29.54 68.60 2.03 44.76 16 4 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 5 H -0.29 -13.02 7.11 99.48 0.71 -12.32 16 6 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 7 C -0.53 -27.88 8.49 25.60 0.22 -27.66 16 8 H 0.06 3.11 7.77 -2.91 -0.02 3.09 16 9 C 0.04 1.97 2.73 -10.24 -0.03 1.95 16 10 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 11 C -0.09 -4.22 5.75 31.67 0.18 -4.03 16 12 C -0.12 -4.80 6.59 31.32 0.21 -4.59 16 13 C 0.17 5.99 3.25 45.72 0.15 6.14 16 14 H 0.07 2.65 7.56 -2.39 -0.02 2.63 16 15 N -0.71 -19.41 4.99 -454.34 -2.27 -21.68 16 16 C 0.70 20.57 8.40 179.05 1.50 22.07 16 17 O -0.61 -24.28 13.43 -3.98 -0.05 -24.33 16 18 N -0.67 -13.63 5.34 -317.23 -1.70 -15.33 16 19 C 0.17 3.81 6.30 38.13 0.24 4.05 16 20 C -0.13 -1.71 9.96 22.41 0.22 -1.48 16 21 C -0.07 -0.83 10.03 22.23 0.22 -0.61 16 22 C -0.13 -2.42 9.58 22.41 0.21 -2.21 16 23 C 0.13 3.53 6.72 38.07 0.26 3.79 16 24 N -0.12 -3.49 4.13 -51.18 -0.21 -3.70 16 25 N -0.33 -9.79 11.21 -56.80 -0.64 -10.42 16 26 C -0.02 -0.40 12.20 85.12 1.04 0.64 16 27 C -0.01 -0.16 12.20 85.12 1.04 0.88 16 28 N -0.31 -7.51 11.21 -56.80 -0.64 -8.15 16 29 C -0.14 -3.98 8.23 22.51 0.19 -3.79 16 30 C -0.11 -3.98 5.94 31.68 0.19 -3.79 16 31 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 32 H 0.04 2.02 8.04 -2.39 -0.02 2.00 16 33 H 0.03 1.74 7.63 -2.39 -0.02 1.72 16 34 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.06 2.29 7.92 -2.39 -0.02 2.27 16 36 H 0.41 8.31 8.38 -92.71 -0.78 7.53 16 37 H 0.43 4.90 8.84 -92.71 -0.82 4.08 16 38 H 0.17 1.02 8.06 -2.91 -0.02 0.99 16 39 H 0.18 0.70 8.06 -2.91 -0.02 0.67 16 40 H 0.15 2.49 7.62 -2.91 -0.02 2.47 16 41 H 0.24 2.60 8.06 -2.91 -0.02 2.57 16 42 H 0.25 1.51 8.06 -2.91 -0.02 1.49 16 43 H 0.13 4.62 5.79 -2.91 -0.02 4.60 16 44 H 0.06 2.21 8.14 -2.38 -0.02 2.19 16 45 H 0.08 2.70 7.63 -2.39 -0.02 2.68 16 Total: -1.00 -80.17 377.47 2.53 -77.64 By element: Atomic # 1 Polarization: 22.97 SS G_CDS: -0.55 Total: 22.41 kcal Atomic # 6 Polarization: -14.00 SS G_CDS: 6.29 Total: -7.71 kcal Atomic # 7 Polarization: -107.59 SS G_CDS: -5.18 Total: -112.76 kcal Atomic # 8 Polarization: -24.28 SS G_CDS: -0.05 Total: -24.33 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.76 kcal Total: -80.17 2.53 -77.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880335095.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.961 kcal (2) G-P(sol) polarization free energy of solvation -80.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.638 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds