Wall clock time and date at job start Sat Apr 11 2020 06:18:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99987 * 2 1 4 4 H 1.48503 * 109.47237 * 264.83247 * 3 2 1 5 5 H 1.48497 * 109.46945 * 24.83023 * 3 2 1 6 6 H 1.48502 * 109.47008 * 144.82895 * 3 2 1 7 7 C 1.37877 * 120.00050 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99956 * 4.81218 * 7 2 1 9 9 C 1.50706 * 119.99927 * 184.81173 * 7 2 1 10 10 H 1.08995 * 109.52242 * 335.11740 * 9 7 2 11 11 C 1.53037 * 109.49493 * 215.03042 * 9 7 2 12 12 C 1.53038 * 109.53495 * 178.68485 * 11 9 7 13 13 C 1.53196 * 109.31462 * 61.36716 * 12 11 9 14 14 N 1.46922 * 108.77368 * 305.36698 * 13 12 11 15 15 C 1.34777 * 120.62701 * 233.33452 * 14 13 12 16 16 O 1.21585 * 119.99954 * 174.73746 * 15 14 13 17 17 N 1.34775 * 120.00289 * 354.73142 * 15 14 13 18 18 C 1.39952 * 120.00164 * 184.52070 * 17 15 14 19 19 C 1.38928 * 120.03425 * 144.32555 * 18 17 15 20 20 C 1.38141 * 120.05926 * 180.02562 * 19 18 17 21 21 C 1.38178 * 120.13897 * 0.02562 * 20 19 18 22 22 C 1.38871 * 120.07268 * 359.97438 * 21 20 19 23 23 N 1.40209 * 120.03166 * 180.02562 * 22 21 20 24 24 N 1.28595 * 124.60963 * 179.69974 * 23 22 21 25 25 C 1.31424 * 108.72548 * 179.82777 * 24 23 22 26 26 C 1.39738 * 105.88267 * 0.41507 * 25 24 23 27 27 N 1.28605 * 124.60796 * 359.97438 * 23 22 21 28 28 C 1.38730 * 120.03371 * 324.04718 * 18 17 15 29 29 C 1.46922 * 118.74070 * 53.60588 * 14 13 12 30 30 H 0.96998 * 119.99915 * 359.97438 * 1 2 3 31 31 H 1.09000 * 109.46103 * 58.67013 * 11 9 7 32 32 H 1.09000 * 109.45537 * 298.70066 * 11 9 7 33 33 H 1.09003 * 109.50061 * 301.41106 * 12 11 9 34 34 H 1.09008 * 109.50056 * 181.31781 * 12 11 9 35 35 H 1.08999 * 109.58951 * 185.57793 * 13 12 11 36 36 H 1.08996 * 109.70017 * 65.22331 * 13 12 11 37 37 H 0.96998 * 119.99703 * 4.52425 * 17 15 14 38 38 H 1.08000 * 119.97104 * 359.97438 * 19 18 17 39 39 H 1.08001 * 119.93024 * 180.02562 * 20 19 18 40 40 H 1.07999 * 119.96901 * 179.97438 * 21 20 19 41 41 H 1.07990 * 127.05700 * 180.19901 * 25 24 23 42 42 H 1.08001 * 127.05908 * 179.77781 * 26 25 24 43 43 H 1.07996 * 120.07044 * 359.97438 * 28 18 17 44 44 H 1.09001 * 109.58519 * 66.17915 * 29 14 13 45 45 H 1.09005 * 109.58793 * 186.60804 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6059 1.9834 -1.3944 5 1 1.3962 2.6817 0.5879 6 1 3.4878 1.4742 0.8065 7 6 2.0045 -1.1940 -0.0005 8 1 1.4674 -2.1276 -0.0794 9 6 3.5076 -1.1964 0.1089 10 1 3.9009 -0.2475 -0.2558 11 6 4.0790 -2.3423 -0.7292 12 6 5.6069 -2.3254 -0.6450 13 6 6.0365 -2.5306 0.8112 14 7 5.3749 -1.5190 1.6463 15 6 6.0947 -0.7291 2.4676 16 8 5.5488 0.1672 3.0816 17 7 7.4194 -0.9329 2.6085 18 6 8.1497 -0.1755 3.5314 19 6 9.2006 -0.7559 4.2307 20 6 9.9214 -0.0089 5.1421 21 6 9.5996 1.3168 5.3616 22 6 8.5503 1.9026 4.6658 23 7 8.2248 3.2481 4.8888 24 7 7.2771 3.8791 4.2911 25 6 7.2458 5.1148 4.7375 26 6 8.2779 5.2090 5.6748 27 7 8.8368 4.0203 5.7153 28 6 7.8287 1.1572 3.7447 29 6 3.9132 -1.3888 1.5736 30 1 -0.4850 0.8400 0.0004 31 1 3.7712 -2.2211 -1.7678 32 1 3.7047 -3.2924 -0.3481 33 1 5.9805 -1.3660 -1.0028 34 1 6.0142 -3.1274 -1.2608 35 1 7.1179 -2.4209 0.8921 36 1 5.7443 -3.5267 1.1435 37 1 7.8667 -1.6045 2.0703 38 1 9.4537 -1.7922 4.0621 39 1 10.7382 -0.4621 5.6843 40 1 10.1647 1.8981 6.0752 41 1 6.5647 5.8976 4.4385 42 1 8.5583 6.0799 6.2488 43 1 7.0154 1.6119 3.1988 44 1 3.4460 -2.2918 1.9666 45 1 3.5937 -0.5256 2.1576 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880335682.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:49 Heat of formation + Delta-G solvation = 129.504786 kcal Electronic energy + Delta-G solvation = -29411.589527 eV Core-core repulsion = 25432.585683 eV Total energy + Delta-G solvation = -3979.003844 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.89282 -40.77491 -39.14645 -37.19707 -35.15347 -33.71781 -33.26971 -32.71589 -31.98354 -30.59529 -30.05397 -29.27696 -25.30080 -25.04489 -24.43857 -23.58050 -22.10634 -21.97018 -21.31042 -20.15090 -19.15858 -18.81579 -17.78814 -16.83547 -16.80008 -16.46580 -16.43057 -15.69813 -15.33931 -14.99727 -14.72406 -14.33223 -14.24439 -13.98997 -13.92419 -13.55889 -13.39021 -12.97767 -12.73540 -12.54228 -12.32857 -12.25647 -11.95822 -11.69131 -11.32481 -11.13091 -10.91001 -10.86658 -10.71920 -10.61430 -10.54564 -10.17381 -10.09090 -9.84281 -9.71150 -9.41841 -9.16029 -8.68005 -8.59113 -8.39188 -8.01376 -6.12584 -4.14138 0.54999 1.10016 1.99825 2.08569 2.30142 2.69020 3.23861 3.32692 3.42912 3.52972 3.62371 3.86485 4.01829 4.43262 4.62806 4.76850 4.82397 4.88108 4.94255 5.06154 5.16053 5.19287 5.23617 5.27403 5.39902 5.55588 5.73485 5.76703 5.85766 5.91638 6.02405 6.06926 6.09024 6.10658 6.19172 6.26907 6.35369 6.54957 6.58661 6.63678 6.68012 6.82891 6.89133 7.08274 7.25220 7.34227 7.71419 8.02010 8.15508 8.45722 8.70169 8.92223 9.50851 10.99620 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011380 B = 0.003555 C = 0.002814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2459.798758 B = 7873.441217 C = 9949.513636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.077 3.923 3 Si 0.870 3.130 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.256 1.256 7 C -0.516 4.516 8 H 0.076 0.924 9 C 0.006 3.994 10 H 0.035 0.965 11 C -0.105 4.105 12 C -0.137 4.137 13 C 0.113 3.887 14 N -0.618 5.618 15 C 0.698 3.302 16 O -0.568 6.568 17 N -0.692 5.692 18 C 0.192 3.808 19 C -0.144 4.144 20 C -0.083 4.083 21 C -0.127 4.127 22 C 0.157 3.843 23 N -0.103 5.103 24 N -0.275 5.275 25 C -0.021 4.021 26 C -0.021 4.021 27 N -0.291 5.291 28 C -0.107 4.107 29 C 0.129 3.871 30 H 0.265 0.735 31 H 0.060 0.940 32 H 0.055 0.945 33 H 0.060 0.940 34 H 0.065 0.935 35 H 0.062 0.938 36 H 0.069 0.931 37 H 0.407 0.593 38 H 0.134 0.866 39 H 0.139 0.861 40 H 0.140 0.860 41 H 0.203 0.797 42 H 0.203 0.797 43 H 0.163 0.837 44 H 0.062 0.938 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.722 0.561 8.027 24.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.126 4.126 3 Si 0.697 3.303 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.180 1.180 7 C -0.554 4.554 8 H 0.094 0.906 9 C -0.014 4.014 10 H 0.053 0.947 11 C -0.142 4.142 12 C -0.176 4.176 13 C -0.010 4.010 14 N -0.354 5.354 15 C 0.400 3.600 16 O -0.444 6.444 17 N -0.342 5.342 18 C 0.095 3.905 19 C -0.166 4.166 20 C -0.103 4.103 21 C -0.149 4.149 22 C 0.067 3.933 23 N 0.005 4.995 24 N -0.113 5.113 25 C -0.205 4.205 26 C -0.204 4.204 27 N -0.130 5.130 28 C -0.131 4.131 29 C 0.008 3.992 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.087 0.913 37 H 0.246 0.754 38 H 0.152 0.848 39 H 0.157 0.843 40 H 0.158 0.842 41 H 0.219 0.781 42 H 0.219 0.781 43 H 0.180 0.820 44 H 0.080 0.920 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 22.328 0.017 8.204 23.787 hybrid contribution 0.237 1.647 -0.137 1.669 sum 22.564 1.664 8.068 24.021 Atomic orbital electron populations 1.69897 1.06376 1.27246 1.49603 1.25066 0.94682 0.99064 0.93770 0.86945 0.80982 0.83616 0.78769 1.20322 1.21464 1.18048 1.20872 0.88558 0.94675 1.51277 0.90635 1.19483 0.96902 0.94797 0.90234 0.94676 1.21577 0.91466 1.00097 1.01096 1.22011 0.99321 1.01603 0.94620 1.21610 0.95398 0.92112 0.91898 1.47835 1.09248 1.36619 1.41653 1.15986 0.80455 0.82660 0.80935 1.90954 1.69811 1.32952 1.50697 1.42917 1.07765 1.41542 1.41996 1.17174 0.92563 0.89216 0.91530 1.21054 0.97666 1.00427 0.97416 1.20742 0.99488 0.92630 0.97407 1.20839 0.96978 0.95933 1.01167 1.17189 0.98150 0.77811 1.00177 1.44887 1.19911 1.09235 1.25476 1.74310 1.09385 1.07316 1.20318 1.25016 1.01880 0.94407 0.99155 1.24929 0.97027 0.96081 1.02385 1.74039 1.22735 1.02749 1.13476 1.21125 1.00892 0.92340 0.98710 1.22452 0.73414 1.02126 1.01212 0.92482 0.92082 0.92650 0.92079 0.91600 0.91931 0.91257 0.75437 0.84825 0.84299 0.84206 0.78054 0.78058 0.81978 0.91998 0.89728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.14 13.96 55.43 0.77 -26.36 16 2 C 0.08 2.21 5.47 -17.82 -0.10 2.12 16 3 Si 0.87 22.32 26.99 -169.99 -4.59 17.73 16 4 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 5 H -0.29 -7.45 7.11 56.52 0.40 -7.04 16 6 H -0.26 -6.70 6.82 56.52 0.39 -6.31 16 7 C -0.52 -13.97 8.86 -34.44 -0.31 -14.28 16 8 H 0.08 2.19 8.06 -52.49 -0.42 1.77 16 9 C 0.01 0.13 1.91 -91.65 -0.18 -0.05 16 10 H 0.04 0.84 5.30 -51.93 -0.27 0.57 16 11 C -0.10 -1.89 5.15 -26.69 -0.14 -2.03 16 12 C -0.14 -1.90 6.08 -26.61 -0.16 -2.06 16 13 C 0.11 1.44 6.38 -3.71 -0.02 1.42 16 14 N -0.62 -10.75 2.97 -178.50 -0.53 -11.28 16 15 C 0.70 12.61 8.14 -86.92 -0.71 11.90 16 16 O -0.57 -12.79 13.25 5.29 0.07 -12.72 16 17 N -0.69 -9.22 5.25 -14.24 -0.07 -9.29 16 18 C 0.19 2.56 6.28 -83.71 -0.53 2.04 16 19 C -0.14 -1.39 9.96 -39.36 -0.39 -1.78 16 20 C -0.08 -0.74 10.03 -39.64 -0.40 -1.14 16 21 C -0.13 -1.44 9.58 -39.37 -0.38 -1.82 16 22 C 0.16 2.31 6.72 -83.61 -0.56 1.75 16 23 N -0.10 -1.59 4.13 32.47 0.13 -1.46 16 24 N -0.28 -4.46 11.21 30.69 0.34 -4.12 16 25 C -0.02 -0.25 12.20 -17.17 -0.21 -0.46 16 26 C -0.02 -0.22 12.20 -17.17 -0.21 -0.43 16 27 N -0.29 -3.94 11.21 30.70 0.34 -3.60 16 28 C -0.11 -1.72 8.22 -39.22 -0.32 -2.04 16 29 C 0.13 2.74 5.71 -3.71 -0.02 2.72 16 30 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 31 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.07 0.72 8.14 -51.92 -0.42 0.30 16 35 H 0.06 0.58 5.66 -51.93 -0.29 0.28 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.41 3.91 6.31 -40.82 -0.26 3.65 16 38 H 0.13 0.89 8.06 -52.49 -0.42 0.46 16 39 H 0.14 0.76 8.06 -52.49 -0.42 0.34 16 40 H 0.14 1.42 7.62 -52.49 -0.40 1.02 16 41 H 0.20 1.63 8.06 -52.49 -0.42 1.21 16 42 H 0.20 1.18 8.06 -52.49 -0.42 0.76 16 43 H 0.16 3.17 5.86 -52.49 -0.31 2.86 16 44 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 45 H 0.08 2.07 7.00 -51.93 -0.36 1.71 16 LS Contribution 368.09 15.07 5.55 5.55 Total: -1.00 -36.13 368.09 -8.30 -44.43 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -5.70 Total: 5.28 kcal Atomic # 6 Polarization: 0.47 SS G_CDS: -4.63 Total: -4.16 kcal Atomic # 7 Polarization: -57.10 SS G_CDS: 0.99 Total: -56.11 kcal Atomic # 8 Polarization: -12.79 SS G_CDS: 0.07 Total: -12.72 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -4.59 Total: 17.73 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -36.13 -8.30 -44.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880335682.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.936 kcal (2) G-P(sol) polarization free energy of solvation -36.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.432 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds