Wall clock time and date at job start Sat Apr 11 2020 06:18:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99601 * 2 1 4 4 H 1.48503 * 109.46996 * 274.98897 * 3 2 1 5 5 H 1.48494 * 109.47391 * 34.99116 * 3 2 1 6 6 H 1.48497 * 109.47261 * 154.99391 * 3 2 1 7 7 C 1.37882 * 120.00457 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00077 * 189.58948 * 7 2 1 9 9 C 1.50697 * 119.99637 * 9.58979 * 7 2 1 10 10 C 1.53040 * 109.46024 * 185.42320 * 9 7 2 11 11 C 1.53193 * 109.31666 * 178.62816 * 10 9 7 12 12 N 1.46928 * 108.77115 * 54.63535 * 11 10 9 13 13 C 1.34775 * 120.62619 * 126.37207 * 12 11 10 14 14 O 1.21586 * 120.00490 * 4.66483 * 13 12 11 15 15 N 1.34779 * 119.99791 * 184.67007 * 13 12 11 16 16 C 1.39946 * 119.99889 * 184.69893 * 15 13 12 17 17 C 1.38935 * 120.03873 * 143.81674 * 16 15 13 18 18 C 1.38136 * 120.06277 * 180.25226 * 17 16 15 19 19 C 1.38189 * 120.13436 * 359.44266 * 18 17 16 20 20 C 1.38853 * 120.07597 * 0.55454 * 19 18 17 21 21 N 1.40212 * 120.03518 * 179.70038 * 20 19 18 22 22 N 1.28595 * 124.60972 * 179.72026 * 21 20 19 23 23 C 1.31427 * 108.72242 * 179.83044 * 22 21 20 24 24 C 1.39737 * 105.88175 * 0.41535 * 23 22 21 25 25 N 1.28595 * 124.60756 * 0.02562 * 21 20 19 26 26 C 1.38736 * 120.03753 * 323.78731 * 16 15 13 27 27 C 1.46922 * 118.73972 * 306.64165 * 12 11 10 28 28 C 1.52763 * 109.00961 * 53.31292 * 27 12 11 29 29 H 0.96998 * 120.00746 * 359.97438 * 1 2 3 30 30 H 1.08996 * 109.46035 * 305.39934 * 9 7 2 31 31 H 1.09001 * 109.49437 * 58.67351 * 10 9 7 32 32 H 1.09003 * 109.52188 * 298.60127 * 10 9 7 33 33 H 1.09002 * 109.58374 * 294.84854 * 11 10 9 34 34 H 1.09001 * 109.70057 * 174.49187 * 11 10 9 35 35 H 0.96997 * 120.00200 * 4.68919 * 15 13 12 36 36 H 1.08001 * 119.96643 * 359.97438 * 17 16 15 37 37 H 1.07999 * 119.92957 * 179.70105 * 18 17 16 38 38 H 1.08002 * 119.96066 * 180.25446 * 19 18 17 39 39 H 1.08000 * 127.05801 * 180.16137 * 23 22 21 40 40 H 1.08004 * 127.05572 * 179.72507 * 24 23 22 41 41 H 1.08005 * 120.06533 * 0.02562 * 26 16 15 42 42 H 1.08998 * 109.58697 * 173.14543 * 27 12 11 43 43 H 1.08997 * 109.58824 * 293.57116 * 27 12 11 44 44 H 1.08994 * 109.56663 * 185.54612 * 28 27 12 45 45 H 1.09000 * 109.38506 * 65.50942 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.3910 2.1074 -1.3948 5 1 1.5032 2.6200 0.8028 6 1 3.5953 1.4122 0.5918 7 6 2.0046 -1.1940 0.0005 8 1 3.0732 -1.2004 0.1563 9 6 1.2669 -2.4901 -0.2163 10 6 2.2331 -3.6631 -0.0352 11 6 1.4725 -4.9796 -0.2226 12 7 0.7939 -4.9524 -1.5255 13 6 0.9780 -5.9467 -2.4164 14 8 1.6427 -6.9188 -2.1139 15 7 0.4252 -5.8636 -3.6428 16 6 0.5330 -6.9378 -4.5332 17 6 -0.5212 -7.2438 -5.3849 18 6 -0.4173 -8.3072 -6.2603 19 6 0.7391 -9.0627 -6.3000 20 6 1.7963 -8.7619 -5.4515 21 7 2.9668 -9.5329 -5.4881 22 7 3.9985 -9.3301 -4.7477 23 6 4.9090 -10.2329 -5.0363 24 6 4.3547 -11.0263 -6.0442 25 7 3.1568 -10.5355 -6.2706 26 6 1.6930 -7.6981 -4.5670 27 6 -0.0843 -3.8176 -1.8410 28 6 0.6894 -2.5168 -1.6333 29 1 -0.4851 0.8400 0.0004 30 1 0.4564 -2.5721 0.5078 31 1 2.6618 -3.6299 0.9664 32 1 3.0309 -3.5954 -0.7748 33 1 0.7343 -5.0913 0.5717 34 1 2.1715 -5.8154 -0.1920 35 1 -0.0476 -5.0593 -3.9082 36 1 -1.4245 -6.6523 -5.3592 37 1 -1.2399 -8.5461 -6.9180 38 1 0.8189 -9.8910 -6.9885 39 1 5.8866 -10.3372 -4.5894 40 1 4.8162 -11.8696 -6.5364 41 1 2.5140 -7.4622 -3.9060 42 1 -0.4104 -3.8854 -2.8788 43 1 -0.9520 -3.8326 -1.1815 44 1 0.0194 -1.6679 -1.7692 45 1 1.5013 -2.4592 -2.3582 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880340742.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:51 Heat of formation + Delta-G solvation = 107.198686 kcal Electronic energy + Delta-G solvation = -28937.794837 eV Core-core repulsion = 24957.823728 eV Total energy + Delta-G solvation = -3979.971110 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -44.80245 -41.98630 -40.19965 -38.55359 -36.30847 -35.37044 -34.47861 -33.70294 -33.06517 -31.83502 -30.98532 -30.21018 -27.96487 -25.37955 -25.19937 -24.44954 -23.99207 -23.04659 -22.29771 -21.58422 -20.50111 -19.88770 -18.99217 -18.29008 -17.78356 -17.57657 -17.26168 -16.83893 -16.61404 -16.36788 -15.99075 -15.58838 -15.35709 -15.18765 -14.95057 -14.79052 -14.52567 -14.38150 -14.18160 -13.84350 -13.35573 -13.21085 -13.01909 -12.87108 -12.77857 -12.54162 -12.51275 -12.20475 -12.05183 -11.89407 -11.85094 -11.53769 -11.51140 -11.22757 -11.06038 -10.93242 -10.84865 -10.41448 -9.76726 -9.53236 -9.13956 -8.13061 -6.20183 -0.32678 0.18611 1.09803 1.19306 1.39513 1.42935 1.49247 1.50257 1.51450 1.95435 2.43554 2.67039 2.71612 3.16787 3.18906 3.86769 3.93608 3.98840 4.00751 4.08075 4.16737 4.28024 4.29990 4.34479 4.41211 4.50062 4.55676 4.64884 4.73826 4.84281 4.92689 4.94896 5.04041 5.13429 5.18076 5.24001 5.25566 5.31383 5.33601 5.36767 5.46387 5.64532 5.65934 5.89075 5.96580 5.96834 6.02340 6.37819 6.75498 6.89233 7.25408 7.35514 7.46156 8.94365 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.018032 B = 0.002373 C = 0.002239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.379871 B =11795.526186 C =12504.465132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.023 3.977 3 Si 0.942 3.058 4 H -0.276 1.276 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.535 4.535 8 H 0.045 0.955 9 C 0.045 3.955 10 C -0.114 4.114 11 C 0.135 3.865 12 N -0.613 5.613 13 C 0.702 3.298 14 O -0.614 6.614 15 N -0.675 5.675 16 C 0.171 3.829 17 C -0.127 4.127 18 C -0.066 4.066 19 C -0.125 4.125 20 C 0.133 3.867 21 N -0.122 5.122 22 N -0.329 5.329 23 C -0.019 4.019 24 C -0.009 4.009 25 N -0.311 5.311 26 C -0.133 4.133 27 C 0.118 3.882 28 C -0.110 4.110 29 H 0.262 0.738 30 H 0.011 0.989 31 H 0.064 0.936 32 H 0.041 0.959 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.423 0.577 36 H 0.171 0.829 37 H 0.185 0.815 38 H 0.151 0.849 39 H 0.236 0.764 40 H 0.248 0.752 41 H 0.123 0.877 42 H 0.096 0.904 43 H 0.073 0.927 44 H 0.065 0.935 45 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.127 -18.789 -15.429 24.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.177 4.177 3 Si 0.769 3.231 4 H -0.202 1.202 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.573 4.573 8 H 0.063 0.937 9 C 0.026 3.974 10 C -0.152 4.152 11 C 0.013 3.987 12 N -0.348 5.348 13 C 0.404 3.596 14 O -0.494 6.494 15 N -0.327 5.327 16 C 0.075 3.925 17 C -0.148 4.148 18 C -0.085 4.085 19 C -0.147 4.147 20 C 0.042 3.958 21 N -0.014 5.014 22 N -0.167 5.167 23 C -0.202 4.202 24 C -0.192 4.192 25 N -0.149 5.149 26 C -0.157 4.157 27 C -0.004 4.004 28 C -0.149 4.149 29 H 0.071 0.929 30 H 0.029 0.971 31 H 0.083 0.917 32 H 0.059 0.941 33 H 0.090 0.910 34 H 0.097 0.903 35 H 0.265 0.735 36 H 0.188 0.812 37 H 0.202 0.798 38 H 0.169 0.831 39 H 0.253 0.747 40 H 0.264 0.736 41 H 0.141 0.859 42 H 0.114 0.886 43 H 0.092 0.908 44 H 0.084 0.916 45 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -1.927 -18.546 -15.078 23.979 hybrid contribution 1.530 1.166 0.471 1.980 sum -0.397 -17.380 -14.607 22.706 Atomic orbital electron populations 1.70023 1.06797 1.27259 1.50878 1.25570 0.95551 1.01743 0.94830 0.85792 0.78911 0.80377 0.78063 1.20212 1.20955 1.19923 1.21494 0.93972 0.92640 1.49226 0.93686 1.18600 0.93792 0.91804 0.93176 1.21876 0.98251 0.94375 1.00693 1.21515 0.96224 0.98194 0.82807 1.47409 1.48973 1.21862 1.16571 1.15965 0.79920 0.82900 0.80817 1.90898 1.45748 1.33624 1.79134 1.42642 1.59317 1.18792 1.11935 1.17440 0.93169 0.89721 0.92212 1.21484 0.97408 0.99275 0.96666 1.21287 0.97057 0.92485 0.97633 1.21143 0.91986 1.02408 0.99116 1.17509 0.84084 0.93426 1.00757 1.44999 1.11520 1.20770 1.24076 1.74250 0.97051 1.26489 1.18938 1.25728 1.01661 0.93144 0.99712 1.25744 0.90235 1.03616 0.99593 1.74002 1.21580 1.02339 1.16983 1.20846 0.99125 0.96479 0.99243 1.21759 0.92412 0.84891 1.01309 1.21664 0.98784 0.95738 0.98701 0.92891 0.97118 0.91718 0.94054 0.90951 0.90303 0.73488 0.81196 0.79812 0.83087 0.74730 0.73609 0.85897 0.88611 0.90828 0.91648 0.94697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.67 12.16 21.45 0.26 -49.40 16 2 C 0.02 1.20 5.19 84.66 0.44 1.64 16 3 Si 0.94 42.38 29.55 68.60 2.03 44.41 16 4 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 5 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 6 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 7 C -0.54 -28.44 8.48 25.60 0.22 -28.23 16 8 H 0.04 2.42 7.77 -2.92 -0.02 2.40 16 9 C 0.04 2.10 1.93 -11.51 -0.02 2.07 16 10 C -0.11 -4.61 5.30 30.67 0.16 -4.45 16 11 C 0.14 4.85 6.42 86.36 0.55 5.41 16 12 N -0.61 -20.81 2.98 -837.74 -2.49 -23.31 16 13 C 0.70 24.16 8.14 179.05 1.46 25.62 16 14 O -0.61 -25.50 13.27 -3.99 -0.05 -25.55 16 15 N -0.68 -17.80 5.23 -317.22 -1.66 -19.46 16 16 C 0.17 4.37 6.28 38.13 0.24 4.61 16 17 C -0.13 -2.10 9.96 22.41 0.22 -1.87 16 18 C -0.07 -0.92 10.03 22.23 0.22 -0.70 16 19 C -0.13 -2.53 9.58 22.41 0.21 -2.31 16 20 C 0.13 3.76 6.72 38.07 0.26 4.02 16 21 N -0.12 -3.60 4.13 -51.18 -0.21 -3.82 16 22 N -0.33 -10.05 11.21 -56.80 -0.64 -10.69 16 23 C -0.02 -0.39 12.20 85.12 1.04 0.65 16 24 C -0.01 -0.15 12.20 85.12 1.04 0.89 16 25 N -0.31 -7.67 11.21 -56.80 -0.64 -8.30 16 26 C -0.13 -4.21 8.22 22.51 0.19 -4.03 16 27 C 0.12 3.72 6.41 86.22 0.55 4.28 16 28 C -0.11 -4.53 5.19 30.53 0.16 -4.37 16 29 H 0.26 13.63 8.31 -92.71 -0.77 12.86 16 30 H 0.01 0.55 8.09 -2.39 -0.02 0.53 16 31 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 32 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 34 H 0.08 2.88 7.03 -2.39 -0.02 2.87 16 35 H 0.42 8.54 6.30 -92.71 -0.58 7.96 16 36 H 0.17 1.60 8.06 -2.91 -0.02 1.58 16 37 H 0.18 0.98 8.06 -2.91 -0.02 0.95 16 38 H 0.15 2.65 7.62 -2.91 -0.02 2.62 16 39 H 0.24 2.64 8.06 -2.91 -0.02 2.61 16 40 H 0.25 1.56 8.06 -2.91 -0.02 1.54 16 41 H 0.12 4.83 5.87 -2.91 -0.02 4.81 16 42 H 0.10 2.25 5.57 -2.39 -0.01 2.23 16 43 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 44 H 0.06 2.99 6.87 -2.39 -0.02 2.97 16 45 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -75.39 369.69 3.98 -71.41 By element: Atomic # 1 Polarization: 21.05 SS G_CDS: 0.45 Total: 21.50 kcal Atomic # 6 Polarization: -3.72 SS G_CDS: 6.94 Total: 3.22 kcal Atomic # 7 Polarization: -109.61 SS G_CDS: -5.38 Total: -114.99 kcal Atomic # 8 Polarization: -25.50 SS G_CDS: -0.05 Total: -25.55 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.41 kcal Total: -75.39 3.98 -71.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880340742.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.606 kcal (2) G-P(sol) polarization free energy of solvation -75.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds