Wall clock time and date at job start Sat Apr 11 2020 06:18:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86798 * 120.00115 * 2 1 4 4 H 1.48497 * 109.47172 * 240.00449 * 3 2 1 5 5 H 1.48511 * 109.46860 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47470 * 119.99779 * 3 2 1 7 7 C 1.39946 * 119.99966 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99671 * 176.12425 * 7 2 1 9 9 C 1.41391 * 119.99847 * 356.12366 * 7 2 1 10 10 C 1.40715 * 120.24806 * 34.63237 * 9 7 2 11 11 C 1.37617 * 119.74831 * 180.22996 * 10 9 7 12 12 C 1.38636 * 120.24813 * 359.51663 * 11 10 9 13 13 C 1.50692 * 119.74963 * 180.28095 * 12 11 10 14 14 N 1.46496 * 109.47536 * 89.99923 * 13 12 11 15 15 C 1.34780 * 120.00236 * 179.97438 * 14 13 12 16 16 O 1.21583 * 120.00107 * 354.48572 * 15 14 13 17 17 N 1.34773 * 119.99956 * 174.48207 * 15 14 13 18 18 C 1.45305 * 119.75059 * 184.57750 * 17 15 14 19 19 C 1.51571 * 114.48546 * 247.41213 * 18 17 15 20 20 C 1.53479 * 110.96237 * 292.64572 * 19 18 17 21 21 N 1.47243 * 107.69470 * 82.54406 * 20 19 18 22 22 N 1.28321 * 127.65677 * 113.99655 * 21 20 19 23 23 N 1.28971 * 110.04042 * 181.76931 * 22 21 20 24 24 C 1.34189 * 108.94896 * 359.43788 * 23 22 21 25 25 C 1.34122 * 105.97159 * 359.74226 * 24 23 22 26 26 C 1.47424 * 119.74791 * 4.30098 * 17 15 14 27 27 C 1.38641 * 120.49817 * 0.25470 * 12 11 10 28 28 C 1.37617 * 120.25129 * 359.97438 * 27 12 11 29 29 H 0.97002 * 120.00151 * 359.97438 * 1 2 3 30 30 H 1.08005 * 120.12333 * 0.02640 * 10 9 7 31 31 H 1.07999 * 119.87664 * 179.79499 * 11 10 9 32 32 H 1.09004 * 109.47075 * 209.99762 * 13 12 11 33 33 H 1.08998 * 109.47119 * 329.99377 * 13 12 11 34 34 H 0.97001 * 119.99708 * 359.97438 * 14 13 12 35 35 H 1.09009 * 108.47687 * 8.70435 * 18 17 15 36 36 H 1.09000 * 108.48728 * 126.11029 * 18 17 15 37 37 H 1.08999 * 109.17850 * 53.02638 * 19 18 17 38 38 H 1.09004 * 109.18334 * 172.26455 * 19 18 17 39 39 H 1.08997 * 109.82007 * 202.09205 * 20 19 18 40 40 H 1.09003 * 109.81272 * 322.93405 * 20 19 18 41 41 H 1.07999 * 127.01774 * 179.74454 * 24 23 22 42 42 H 1.09004 * 109.97812 * 222.68685 * 26 17 15 43 43 H 1.08995 * 109.97232 * 344.01840 * 26 17 15 44 44 H 1.07994 * 119.87278 * 179.97438 * 27 12 11 45 45 H 1.07994 * 120.12762 * 180.02562 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0959 1.6964 -1.2125 5 1 1.2772 2.7465 0.0006 6 1 3.0960 1.6964 1.2125 7 6 2.0080 -1.2120 -0.0005 8 1 3.0861 -1.2130 -0.0638 9 6 1.3034 -2.4351 0.0817 10 6 0.0445 -2.5706 -0.5323 11 6 -0.6344 -3.7642 -0.4418 12 6 -0.0781 -4.8339 0.2426 13 6 -0.8286 -6.1378 0.3293 14 7 -0.4630 -6.9882 -0.8061 15 6 -1.0139 -8.2113 -0.9370 16 8 -1.7363 -8.6494 -0.0627 17 7 -0.7643 -8.9486 -2.0372 18 6 -1.4387 -10.2226 -2.2197 19 6 -0.5275 -11.4317 -2.1480 20 6 0.4411 -11.4607 -3.3382 21 7 1.5731 -10.5761 -3.0157 22 7 2.7980 -10.9080 -2.8256 23 7 3.4969 -9.8661 -2.5270 24 6 2.6969 -8.7888 -2.5310 25 6 1.4752 -9.2377 -2.8548 26 6 0.1865 -8.4535 -3.0493 27 6 1.1636 -4.7132 0.8473 28 6 1.8583 -3.5276 0.7736 29 1 -0.4850 0.8400 0.0004 30 1 -0.3887 -1.7400 -1.0698 31 1 -1.6022 -3.8695 -0.9094 32 1 -0.5713 -6.6439 1.2599 33 1 -1.9006 -5.9422 0.3065 34 1 0.1756 -6.6710 -1.4638 35 1 -2.2049 -10.3212 -1.4506 36 1 -1.9299 -10.2174 -3.1928 37 1 0.0450 -11.3942 -1.2212 38 1 -1.1334 -12.3378 -2.1572 39 1 0.8004 -12.4774 -3.4976 40 1 -0.0648 -11.1030 -4.2350 41 1 2.9791 -7.7685 -2.3173 42 1 -0.2100 -8.6281 -4.0496 43 1 0.3683 -7.3892 -2.9002 44 1 1.5873 -5.5528 1.3782 45 1 2.8256 -3.4359 1.2450 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889294176.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:58 Heat of formation + Delta-G solvation = 101.883823 kcal Electronic energy + Delta-G solvation = -29102.876177 eV Core-core repulsion = 25122.674598 eV Total energy + Delta-G solvation = -3980.201579 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.57196 -40.30236 -37.91056 -37.09248 -35.04417 -34.75764 -33.45878 -32.49341 -31.39535 -30.23624 -29.40059 -27.45657 -26.96174 -26.16511 -23.96332 -22.95027 -22.43264 -21.09605 -20.84190 -20.17430 -19.83731 -18.43017 -17.91884 -17.38603 -16.57204 -16.31993 -15.77788 -15.40207 -15.25070 -14.78756 -14.37958 -14.34077 -14.23816 -13.94013 -13.75183 -13.58335 -13.41606 -12.97808 -12.66274 -12.47958 -12.21442 -12.05195 -11.94798 -11.77100 -11.72706 -11.65208 -11.16202 -11.12335 -11.01032 -10.58785 -10.54016 -10.23800 -10.16149 -9.77288 -9.53514 -9.45499 -9.25733 -9.15738 -8.62118 -7.60748 -7.36207 -6.72880 -4.51866 1.32924 2.05750 2.31522 2.47466 2.79953 2.94240 3.03220 3.05061 3.11968 3.18353 3.88403 3.91421 3.97559 4.09739 4.17104 4.30039 4.54521 4.60299 4.67417 4.83536 4.86771 5.04806 5.08473 5.24649 5.45684 5.51997 5.53096 5.60914 5.69175 5.86949 6.00893 6.16075 6.19857 6.26005 6.31985 6.36993 6.70836 6.82215 6.84558 7.00873 7.14227 7.28103 7.51210 7.67644 7.94647 7.98595 8.01336 8.20152 8.33727 8.54762 8.62094 8.81113 8.84955 10.17621 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017421 B = 0.002494 C = 0.002294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.835820 B =11226.342438 C =12202.900875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.807 5.807 2 C 0.071 3.929 3 Si 0.916 3.084 4 H -0.265 1.265 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.462 4.462 8 H 0.076 0.924 9 C 0.113 3.887 10 C -0.157 4.157 11 C -0.087 4.087 12 C -0.234 4.234 13 C 0.199 3.801 14 N -0.730 5.730 15 C 0.704 3.296 16 O -0.591 6.591 17 N -0.631 5.631 18 C 0.121 3.879 19 C -0.155 4.155 20 C 0.115 3.885 21 N -0.283 5.283 22 N -0.084 5.084 23 N -0.274 5.274 24 C -0.028 4.028 25 C -0.044 4.044 26 C 0.185 3.815 27 C -0.077 4.077 28 C -0.217 4.217 29 H 0.280 0.720 30 H 0.128 0.872 31 H 0.089 0.911 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.395 0.605 35 H 0.102 0.898 36 H 0.069 0.931 37 H 0.080 0.920 38 H 0.105 0.895 39 H 0.113 0.887 40 H 0.104 0.896 41 H 0.194 0.806 42 H 0.098 0.902 43 H 0.114 0.886 44 H 0.089 0.911 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.568 -16.522 -9.654 19.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C -0.145 4.145 3 Si 0.741 3.259 4 H -0.190 1.190 5 H -0.204 1.204 6 H -0.190 1.190 7 C -0.493 4.493 8 H 0.095 0.905 9 C 0.110 3.890 10 C -0.176 4.176 11 C -0.106 4.106 12 C -0.236 4.236 13 C 0.077 3.923 14 N -0.386 5.386 15 C 0.405 3.595 16 O -0.469 6.469 17 N -0.368 5.368 18 C -0.003 4.003 19 C -0.195 4.195 20 C -0.006 4.006 21 N -0.080 5.080 22 N -0.063 5.063 23 N -0.139 5.139 24 C -0.185 4.185 25 C -0.176 4.176 26 C 0.059 3.941 27 C -0.096 4.096 28 C -0.237 4.237 29 H 0.091 0.909 30 H 0.146 0.854 31 H 0.107 0.893 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.232 0.768 35 H 0.121 0.879 36 H 0.087 0.913 37 H 0.098 0.902 38 H 0.123 0.877 39 H 0.131 0.869 40 H 0.122 0.878 41 H 0.211 0.789 42 H 0.116 0.884 43 H 0.132 0.868 44 H 0.107 0.893 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -3.335 -17.830 -8.953 20.228 hybrid contribution -0.063 1.739 -0.256 1.759 sum -3.397 -16.091 -9.208 18.848 Atomic orbital electron populations 1.69736 1.07330 1.29060 1.37209 1.25900 0.94956 1.01275 0.92391 0.86240 0.79834 0.79993 0.79874 1.18957 1.20352 1.19023 1.19571 0.94728 0.90203 1.44749 0.90539 1.17726 0.92047 0.91738 0.87451 1.21596 0.97359 0.96172 1.02489 1.20639 0.97808 0.93633 0.98565 1.19055 0.98179 0.94467 1.11862 1.19868 0.97798 0.87744 0.86852 1.45886 1.47509 1.15111 1.30087 1.16017 0.80715 0.81137 0.81584 1.90892 1.43221 1.72063 1.40749 1.47082 1.46981 1.21117 1.21661 1.20744 0.94734 0.81317 1.03495 1.22238 0.98656 1.00372 0.98198 1.22548 0.83631 0.94902 0.99522 1.47579 1.08518 1.06822 1.45033 1.78243 0.88166 1.22040 1.17864 1.75387 1.26203 0.95836 1.16487 1.23209 0.89407 1.00621 1.05233 1.22673 0.99686 0.85417 1.09871 1.20482 0.82650 0.97848 0.93115 1.20439 0.94113 0.96435 0.98576 1.21119 1.01241 0.95053 1.06250 0.90910 0.85397 0.89300 0.92415 0.92371 0.76839 0.87931 0.91295 0.90178 0.87661 0.86907 0.87812 0.78914 0.88433 0.86837 0.89293 0.88758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -20.08 10.62 55.55 0.59 -19.49 16 2 C 0.07 1.71 5.42 -17.34 -0.09 1.62 16 3 Si 0.92 18.19 29.56 -169.99 -5.03 13.17 16 4 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 5 H -0.28 -5.42 7.11 56.52 0.40 -5.02 16 6 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 7 C -0.46 -11.66 9.04 -37.74 -0.34 -12.00 16 8 H 0.08 1.85 7.85 -52.49 -0.41 1.44 16 9 C 0.11 2.81 5.55 -106.82 -0.59 2.22 16 10 C -0.16 -3.76 8.67 -38.87 -0.34 -4.09 16 11 C -0.09 -1.84 9.67 -39.66 -0.38 -2.22 16 12 C -0.23 -4.56 5.27 -104.33 -0.55 -5.11 16 13 C 0.20 3.41 5.79 -5.20 -0.03 3.38 16 14 N -0.73 -10.61 5.44 -66.42 -0.36 -10.97 16 15 C 0.70 10.28 8.26 -86.92 -0.72 9.56 16 16 O -0.59 -10.79 15.65 5.29 0.08 -10.70 16 17 N -0.63 -6.52 2.68 -181.03 -0.49 -7.00 16 18 C 0.12 0.94 5.65 -5.41 -0.03 0.91 16 19 C -0.15 -0.97 5.84 -27.21 -0.16 -1.13 16 20 C 0.11 0.65 6.63 -3.39 -0.02 0.63 16 21 N -0.28 -2.90 3.39 -56.12 -0.19 -3.09 16 22 N -0.08 -1.13 13.24 60.35 0.80 -0.33 16 23 N -0.27 -4.02 12.43 30.08 0.37 -3.65 16 24 C -0.03 -0.33 12.04 -17.97 -0.22 -0.55 16 25 C -0.04 -0.45 6.34 -81.88 -0.52 -0.97 16 26 C 0.18 1.49 6.15 -3.99 -0.02 1.47 16 27 C -0.08 -1.57 9.67 -39.66 -0.38 -1.95 16 28 C -0.22 -4.94 9.80 -38.87 -0.38 -5.32 16 29 H 0.28 6.41 8.30 -40.82 -0.34 6.07 16 30 H 0.13 3.23 6.15 -52.48 -0.32 2.91 16 31 H 0.09 1.70 8.06 -52.49 -0.42 1.28 16 32 H 0.06 1.03 8.08 -51.93 -0.42 0.61 16 33 H 0.06 1.01 8.08 -51.93 -0.42 0.59 16 34 H 0.40 5.09 5.93 -40.82 -0.24 4.85 16 35 H 0.10 1.01 6.85 -51.92 -0.36 0.65 16 36 H 0.07 0.34 8.03 -51.93 -0.42 -0.07 16 37 H 0.08 0.78 8.07 -51.93 -0.42 0.36 16 38 H 0.11 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.11 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.10 0.33 7.92 -51.93 -0.41 -0.08 16 41 H 0.19 1.97 8.06 -52.49 -0.42 1.54 16 42 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.11 0.88 5.71 -51.93 -0.30 0.58 16 44 H 0.09 1.66 8.06 -52.49 -0.42 1.24 16 45 H 0.09 2.05 8.06 -52.49 -0.42 1.63 16 LS Contribution 371.74 15.07 5.60 5.60 Total: -1.00 -31.78 371.74 -9.21 -40.98 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: -5.81 Total: 9.03 kcal Atomic # 6 Polarization: -8.78 SS G_CDS: -4.78 Total: -13.56 kcal Atomic # 7 Polarization: -45.25 SS G_CDS: 0.73 Total: -44.52 kcal Atomic # 8 Polarization: -10.79 SS G_CDS: 0.08 Total: -10.70 kcal Atomic # 14 Polarization: 18.19 SS G_CDS: -5.03 Total: 13.17 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.78 -9.21 -40.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889294176.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.867 kcal (2) G-P(sol) polarization free energy of solvation -31.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.984 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds