Wall clock time and date at job start Sat Apr 11 2020 06:18:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86798 * 120.00115 * 2 1 4 4 H 1.48497 * 109.47172 * 240.00449 * 3 2 1 5 5 H 1.48511 * 109.46860 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47470 * 119.99779 * 3 2 1 7 7 C 1.39946 * 119.99966 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99671 * 176.12425 * 7 2 1 9 9 C 1.41391 * 119.99847 * 356.12366 * 7 2 1 10 10 C 1.40715 * 120.24806 * 34.63237 * 9 7 2 11 11 C 1.37617 * 119.74831 * 180.22996 * 10 9 7 12 12 C 1.38636 * 120.24813 * 359.51663 * 11 10 9 13 13 C 1.50692 * 119.74963 * 180.28095 * 12 11 10 14 14 N 1.46496 * 109.47536 * 89.99923 * 13 12 11 15 15 C 1.34780 * 120.00236 * 179.97438 * 14 13 12 16 16 O 1.21583 * 120.00107 * 354.48572 * 15 14 13 17 17 N 1.34773 * 119.99956 * 174.48207 * 15 14 13 18 18 C 1.45305 * 119.75059 * 184.57750 * 17 15 14 19 19 C 1.51571 * 114.48546 * 247.41213 * 18 17 15 20 20 C 1.53479 * 110.96237 * 292.64572 * 19 18 17 21 21 N 1.47243 * 107.69470 * 82.54406 * 20 19 18 22 22 N 1.28321 * 127.65677 * 113.99655 * 21 20 19 23 23 N 1.28971 * 110.04042 * 181.76931 * 22 21 20 24 24 C 1.34189 * 108.94896 * 359.43788 * 23 22 21 25 25 C 1.34122 * 105.97159 * 359.74226 * 24 23 22 26 26 C 1.47424 * 119.74791 * 4.30098 * 17 15 14 27 27 C 1.38641 * 120.49817 * 0.25470 * 12 11 10 28 28 C 1.37617 * 120.25129 * 359.97438 * 27 12 11 29 29 H 0.97002 * 120.00151 * 359.97438 * 1 2 3 30 30 H 1.08005 * 120.12333 * 0.02640 * 10 9 7 31 31 H 1.07999 * 119.87664 * 179.79499 * 11 10 9 32 32 H 1.09004 * 109.47075 * 209.99762 * 13 12 11 33 33 H 1.08998 * 109.47119 * 329.99377 * 13 12 11 34 34 H 0.97001 * 119.99708 * 359.97438 * 14 13 12 35 35 H 1.09009 * 108.47687 * 8.70435 * 18 17 15 36 36 H 1.09000 * 108.48728 * 126.11029 * 18 17 15 37 37 H 1.08999 * 109.17850 * 53.02638 * 19 18 17 38 38 H 1.09004 * 109.18334 * 172.26455 * 19 18 17 39 39 H 1.08997 * 109.82007 * 202.09205 * 20 19 18 40 40 H 1.09003 * 109.81272 * 322.93405 * 20 19 18 41 41 H 1.07999 * 127.01774 * 179.74454 * 24 23 22 42 42 H 1.09004 * 109.97812 * 222.68685 * 26 17 15 43 43 H 1.08995 * 109.97232 * 344.01840 * 26 17 15 44 44 H 1.07994 * 119.87278 * 179.97438 * 27 12 11 45 45 H 1.07994 * 120.12762 * 180.02562 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0959 1.6964 -1.2125 5 1 1.2772 2.7465 0.0006 6 1 3.0960 1.6964 1.2125 7 6 2.0080 -1.2120 -0.0005 8 1 3.0861 -1.2130 -0.0638 9 6 1.3034 -2.4351 0.0817 10 6 0.0445 -2.5706 -0.5323 11 6 -0.6344 -3.7642 -0.4418 12 6 -0.0781 -4.8339 0.2426 13 6 -0.8286 -6.1378 0.3293 14 7 -0.4630 -6.9882 -0.8061 15 6 -1.0139 -8.2113 -0.9370 16 8 -1.7363 -8.6494 -0.0627 17 7 -0.7643 -8.9486 -2.0372 18 6 -1.4387 -10.2226 -2.2197 19 6 -0.5275 -11.4317 -2.1480 20 6 0.4411 -11.4607 -3.3382 21 7 1.5731 -10.5761 -3.0157 22 7 2.7980 -10.9080 -2.8256 23 7 3.4969 -9.8661 -2.5270 24 6 2.6969 -8.7888 -2.5310 25 6 1.4752 -9.2377 -2.8548 26 6 0.1865 -8.4535 -3.0493 27 6 1.1636 -4.7132 0.8473 28 6 1.8583 -3.5276 0.7736 29 1 -0.4850 0.8400 0.0004 30 1 -0.3887 -1.7400 -1.0698 31 1 -1.6022 -3.8695 -0.9094 32 1 -0.5713 -6.6439 1.2599 33 1 -1.9006 -5.9422 0.3065 34 1 0.1756 -6.6710 -1.4638 35 1 -2.2049 -10.3212 -1.4506 36 1 -1.9299 -10.2174 -3.1928 37 1 0.0450 -11.3942 -1.2212 38 1 -1.1334 -12.3378 -2.1572 39 1 0.8004 -12.4774 -3.4976 40 1 -0.0648 -11.1030 -4.2350 41 1 2.9791 -7.7685 -2.3173 42 1 -0.2100 -8.6281 -4.0496 43 1 0.3683 -7.3892 -2.9002 44 1 1.5873 -5.5528 1.3782 45 1 2.8256 -3.4359 1.2450 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889294176.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:57 Heat of formation + Delta-G solvation = 82.009831 kcal Electronic energy + Delta-G solvation = -29103.737978 eV Core-core repulsion = 25122.674598 eV Total energy + Delta-G solvation = -3981.063380 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.41723 -41.36468 -39.53746 -38.01655 -36.34112 -35.78344 -34.98495 -33.32594 -32.37759 -31.73055 -31.14275 -28.72280 -27.82312 -27.16547 -25.39679 -23.91455 -23.29041 -22.85107 -21.83573 -21.54948 -20.87253 -19.42006 -19.19459 -18.66775 -17.54829 -17.17601 -17.12471 -16.77121 -16.15269 -15.90285 -15.64984 -15.62185 -15.34424 -15.15204 -14.88455 -14.69967 -14.27215 -14.20017 -13.79736 -13.73888 -13.54780 -13.38204 -13.24527 -12.83171 -12.79027 -12.75485 -12.48075 -12.34379 -12.31384 -12.12158 -11.84640 -11.53552 -11.38080 -11.25988 -11.02497 -11.02147 -10.34922 -10.23358 -9.66569 -9.36196 -9.14163 -8.50898 -6.39351 0.50140 0.83793 1.15337 1.40118 1.40827 1.44858 1.49857 1.52079 1.83050 2.07122 2.23879 2.74240 3.01634 3.26965 3.48663 3.63854 3.67875 3.72314 3.96687 4.10398 4.10973 4.20982 4.33834 4.37300 4.46776 4.50906 4.54617 4.59890 4.69624 4.77767 4.82127 4.91155 5.06603 5.08191 5.15709 5.20093 5.36703 5.43395 5.49262 5.52792 5.64728 5.73619 5.78773 5.94715 6.14234 6.22167 6.41258 6.73171 6.90354 6.97788 7.03905 7.44081 7.50381 8.41149 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017421 B = 0.002494 C = 0.002294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.835820 B =11226.342438 C =12202.900875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.838 5.838 2 C 0.030 3.970 3 Si 0.984 3.016 4 H -0.259 1.259 5 H -0.270 1.270 6 H -0.265 1.265 7 C -0.499 4.499 8 H 0.073 0.927 9 C 0.082 3.918 10 C -0.176 4.176 11 C -0.084 4.084 12 C -0.211 4.211 13 C 0.211 3.789 14 N -0.727 5.727 15 C 0.701 3.299 16 O -0.631 6.631 17 N -0.623 5.623 18 C 0.113 3.887 19 C -0.143 4.143 20 C 0.105 3.895 21 N -0.274 5.274 22 N -0.111 5.111 23 N -0.316 5.316 24 C -0.047 4.047 25 C -0.037 4.037 26 C 0.187 3.813 27 C -0.076 4.076 28 C -0.228 4.228 29 H 0.284 0.716 30 H 0.110 0.890 31 H 0.110 0.890 32 H 0.052 0.948 33 H 0.059 0.941 34 H 0.405 0.595 35 H 0.080 0.920 36 H 0.112 0.888 37 H 0.040 0.960 38 H 0.140 0.860 39 H 0.129 0.871 40 H 0.142 0.858 41 H 0.203 0.797 42 H 0.141 0.859 43 H 0.117 0.883 44 H 0.111 0.889 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.736 -17.921 -11.351 21.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.466 5.466 2 C -0.182 4.182 3 Si 0.805 3.195 4 H -0.183 1.183 5 H -0.195 1.195 6 H -0.190 1.190 7 C -0.530 4.530 8 H 0.091 0.909 9 C 0.079 3.921 10 C -0.195 4.195 11 C -0.103 4.103 12 C -0.212 4.212 13 C 0.087 3.913 14 N -0.383 5.383 15 C 0.403 3.597 16 O -0.512 6.512 17 N -0.359 5.359 18 C -0.010 4.010 19 C -0.183 4.183 20 C -0.013 4.013 21 N -0.071 5.071 22 N -0.090 5.090 23 N -0.180 5.180 24 C -0.205 4.205 25 C -0.171 4.171 26 C 0.062 3.938 27 C -0.095 4.095 28 C -0.248 4.248 29 H 0.095 0.905 30 H 0.127 0.873 31 H 0.128 0.872 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.243 0.757 35 H 0.099 0.901 36 H 0.130 0.870 37 H 0.059 0.941 38 H 0.158 0.842 39 H 0.147 0.853 40 H 0.160 0.840 41 H 0.220 0.780 42 H 0.158 0.842 43 H 0.135 0.865 44 H 0.129 0.871 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -4.484 -19.287 -10.698 22.507 hybrid contribution 0.196 1.939 0.261 1.966 sum -4.289 -17.349 -10.436 20.695 Atomic orbital electron populations 1.69812 1.08543 1.30020 1.38217 1.26692 0.95736 1.04224 0.91597 0.85219 0.78555 0.75872 0.79854 1.18314 1.19483 1.18952 1.19802 0.94827 0.91379 1.46991 0.90855 1.18028 0.92923 0.92537 0.88581 1.21520 0.97737 0.96863 1.03411 1.20817 0.98354 0.92851 0.98301 1.19247 0.97457 0.95080 1.09450 1.19590 0.97341 0.86671 0.87686 1.45544 1.47930 1.15210 1.29628 1.16130 0.80260 0.81095 0.82214 1.90871 1.44962 1.72892 1.42515 1.47115 1.46729 1.21496 1.20545 1.21050 0.94501 0.80465 1.04973 1.22179 0.98384 1.01194 0.96543 1.23059 0.82261 0.95491 1.00498 1.47986 1.08483 1.07366 1.43252 1.78147 0.89613 1.22051 1.19159 1.75323 1.27811 0.96836 1.18080 1.23546 0.90263 1.00822 1.05906 1.22943 0.99844 0.85662 1.08607 1.20798 0.81115 0.97580 0.94324 1.20665 0.94243 0.96260 0.98303 1.21260 1.01688 0.95473 1.06371 0.90505 0.87252 0.87232 0.92961 0.92309 0.75726 0.90137 0.87026 0.94112 0.84248 0.85275 0.83998 0.78034 0.84158 0.86478 0.87131 0.88513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -42.83 10.62 21.83 0.23 -42.60 16 2 C 0.03 1.48 5.42 85.26 0.46 1.94 16 3 Si 0.98 37.77 29.56 68.60 2.03 39.80 16 4 H -0.26 -9.58 7.11 99.48 0.71 -8.87 16 5 H -0.27 -9.90 7.11 99.48 0.71 -9.19 16 6 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 7 C -0.50 -26.05 9.04 23.46 0.21 -25.83 16 8 H 0.07 3.69 7.85 -2.91 -0.02 3.67 16 9 C 0.08 4.17 5.55 -21.29 -0.12 4.05 16 10 C -0.18 -8.60 8.67 22.73 0.20 -8.40 16 11 C -0.08 -3.49 9.67 22.22 0.21 -3.27 16 12 C -0.21 -7.95 5.27 -19.68 -0.10 -8.05 16 13 C 0.21 6.85 5.79 85.63 0.50 7.35 16 14 N -0.73 -19.69 5.44 -482.32 -2.62 -22.31 16 15 C 0.70 19.17 8.26 179.05 1.48 20.65 16 16 O -0.63 -22.41 15.65 -3.98 -0.06 -22.47 16 17 N -0.62 -11.00 2.68 -844.93 -2.26 -13.26 16 18 C 0.11 1.36 5.65 86.14 0.49 1.85 16 19 C -0.14 -1.33 5.84 30.29 0.18 -1.16 16 20 C 0.11 0.78 6.63 86.40 0.57 1.36 16 21 N -0.27 -4.99 3.39 -331.48 -1.12 -6.12 16 22 N -0.11 -2.90 13.24 37.02 0.49 -2.41 16 23 N -0.32 -9.31 12.43 -58.75 -0.73 -10.04 16 24 C -0.05 -1.12 12.04 83.39 1.00 -0.12 16 25 C -0.04 -0.68 6.34 41.56 0.26 -0.41 16 26 C 0.19 2.33 6.15 85.91 0.53 2.86 16 27 C -0.08 -3.04 9.67 22.22 0.21 -2.83 16 28 C -0.23 -10.52 9.80 22.73 0.22 -10.29 16 29 H 0.28 13.30 8.30 -92.71 -0.77 12.53 16 30 H 0.11 5.72 6.15 -2.91 -0.02 5.71 16 31 H 0.11 4.03 8.06 -2.91 -0.02 4.00 16 32 H 0.05 1.79 8.08 -2.38 -0.02 1.77 16 33 H 0.06 1.94 8.08 -2.39 -0.02 1.92 16 34 H 0.40 9.51 5.93 -92.71 -0.55 8.96 16 35 H 0.08 1.40 6.85 -2.38 -0.02 1.39 16 36 H 0.11 0.47 8.03 -2.39 -0.02 0.45 16 37 H 0.04 0.73 8.07 -2.39 -0.02 0.71 16 38 H 0.14 0.38 8.14 -2.39 -0.02 0.36 16 39 H 0.13 0.61 8.14 -2.39 -0.02 0.59 16 40 H 0.14 0.05 7.92 -2.39 -0.02 0.04 16 41 H 0.20 4.05 8.06 -2.91 -0.02 4.03 16 42 H 0.14 0.67 8.14 -2.38 -0.02 0.65 16 43 H 0.12 1.43 5.71 -2.39 -0.01 1.42 16 44 H 0.11 3.94 8.06 -2.91 -0.02 3.92 16 45 H 0.10 4.29 8.06 -2.91 -0.02 4.26 16 Total: -1.00 -73.49 371.74 2.74 -70.75 By element: Atomic # 1 Polarization: 28.49 SS G_CDS: 0.48 Total: 28.98 kcal Atomic # 6 Polarization: -26.62 SS G_CDS: 6.31 Total: -20.31 kcal Atomic # 7 Polarization: -90.73 SS G_CDS: -6.02 Total: -96.75 kcal Atomic # 8 Polarization: -22.41 SS G_CDS: -0.06 Total: -22.47 kcal Atomic # 14 Polarization: 37.77 SS G_CDS: 2.03 Total: 39.80 kcal Total: -73.49 2.74 -70.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889294176.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.759 kcal (2) G-P(sol) polarization free energy of solvation -73.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.749 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds