Wall clock time and date at job start Sat Apr 11 2020 06:19:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 120.00000 * 2 1 4 4 H 1.48497 * 109.47210 * 270.00097 * 3 2 1 5 5 H 1.48502 * 109.46948 * 30.00039 * 3 2 1 6 6 H 1.48502 * 109.47225 * 149.99985 * 3 2 1 7 7 C 1.37878 * 120.00414 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99972 * 359.97438 * 7 2 1 9 9 C 1.50694 * 120.00565 * 180.02562 * 7 2 1 10 10 N 1.46495 * 109.47645 * 179.97438 * 9 7 2 11 11 C 1.46493 * 120.00229 * 270.00053 * 10 9 7 12 12 C 1.53004 * 109.47046 * 269.99389 * 11 10 9 13 13 C 1.53001 * 117.50132 * 243.61770 * 12 11 10 14 14 C 1.52999 * 59.99971 * 252.51114 * 13 12 11 15 15 C 1.34781 * 120.00129 * 89.99260 * 10 9 7 16 16 O 1.21591 * 119.99859 * 0.02562 * 15 10 9 17 17 N 1.34771 * 120.00174 * 180.02562 * 15 10 9 18 18 C 1.39966 * 119.99955 * 185.34037 * 17 15 10 19 19 C 1.38753 * 120.10377 * 34.86317 * 18 17 15 20 20 C 1.38154 * 119.99767 * 180.02562 * 19 18 17 21 21 C 1.38333 * 120.20081 * 359.97438 * 20 19 18 22 22 C 1.38166 * 120.19728 * 0.02562 * 21 20 19 23 23 C 1.38722 * 120.00399 * 0.02562 * 22 21 20 24 24 N 1.40232 * 120.09835 * 179.97438 * 23 22 21 25 25 N 1.28596 * 124.61195 * 174.73616 * 24 23 22 26 26 C 1.31454 * 108.72233 * 179.82933 * 25 24 23 27 27 C 1.39694 * 105.88866 * 0.41498 * 26 25 24 28 28 N 1.28601 * 124.61103 * 355.03853 * 24 23 22 29 29 H 0.96994 * 120.00197 * 0.02562 * 1 2 3 30 30 H 1.08996 * 109.47410 * 59.99077 * 9 7 2 31 31 H 1.09003 * 109.46708 * 299.99512 * 9 7 2 32 32 H 1.09001 * 109.47173 * 29.99413 * 11 10 9 33 33 H 1.09005 * 109.47755 * 149.99785 * 11 10 9 34 34 H 1.09000 * 115.54570 * 29.33180 * 12 11 10 35 35 H 1.08993 * 117.49602 * 0.02562 * 13 12 11 36 36 H 1.08996 * 117.49524 * 145.02159 * 13 12 11 37 37 H 1.09002 * 117.50012 * 252.50620 * 14 13 12 38 38 H 1.09010 * 117.49539 * 107.49433 * 14 13 12 39 39 H 0.97000 * 120.00501 * 5.33423 * 17 15 10 40 40 H 1.07998 * 120.00053 * 0.02562 * 19 18 17 41 41 H 1.08002 * 119.90495 * 180.25886 * 20 19 18 42 42 H 1.07999 * 119.90361 * 180.02562 * 21 20 19 43 43 H 1.08000 * 119.99511 * 179.97438 * 22 21 20 44 44 H 1.07997 * 127.05448 * 180.16559 * 26 25 24 45 45 H 1.07994 * 127.05865 * 179.72372 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4647 -2.1294 -0.0005 9 6 3.5116 -1.1940 0.0000 10 7 4.0000 -2.5752 -0.0001 11 6 4.2437 -3.2661 1.2685 12 6 5.6886 -3.0258 1.7107 13 6 6.6120 -4.2425 1.7992 14 6 6.1087 -3.5695 3.0777 15 6 4.2250 -3.2103 -1.1674 16 8 4.0230 -2.6368 -2.2203 17 7 4.6738 -4.4811 -1.1675 18 6 5.0138 -5.1031 -2.3744 19 6 5.5864 -4.3652 -3.4004 20 6 5.9207 -4.9812 -4.5910 21 6 5.6868 -6.3336 -4.7644 22 6 5.1170 -7.0762 -3.7481 23 6 4.7772 -6.4659 -2.5496 24 7 4.1983 -7.2177 -1.5169 25 7 3.9388 -6.7656 -0.3414 26 6 3.3992 -7.7292 0.3716 27 6 3.3504 -8.8447 -0.4678 28 7 3.8598 -8.4544 -1.6151 29 1 -0.4850 0.8400 -0.0004 30 1 3.8746 -0.6807 0.8904 31 1 3.8752 -0.6797 -0.8895 32 1 3.5626 -2.8821 2.0280 33 1 4.0768 -4.3353 1.1379 34 1 6.1283 -2.0822 1.3876 35 1 6.1903 -5.2141 1.5419 36 1 7.6595 -4.0996 1.5340 37 1 6.8252 -2.9840 3.6538 38 1 5.3558 -4.0986 3.6621 39 1 4.7613 -4.9647 -0.3312 40 1 5.7708 -3.3093 -3.2684 41 1 6.3701 -4.4063 -5.3871 42 1 5.9504 -6.8104 -5.6969 43 1 4.9355 -8.1318 -3.8871 44 1 3.0661 -7.6715 1.3973 45 1 2.9722 -9.8265 -0.2242 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889447402.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:01 Heat of formation + Delta-G solvation = 171.339476 kcal Electronic energy + Delta-G solvation = -30256.065389 eV Core-core repulsion = 26278.875633 eV Total energy + Delta-G solvation = -3977.189756 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.91735 -40.44146 -38.84819 -37.31492 -34.94247 -34.45814 -33.76448 -32.61515 -32.39416 -30.14095 -29.36532 -28.17710 -26.27208 -24.23201 -23.92680 -22.69052 -22.37079 -21.64959 -21.27701 -20.83446 -19.24639 -18.43669 -17.86199 -17.07804 -16.91199 -16.82950 -15.58615 -15.58128 -15.19047 -14.93917 -14.92782 -14.49072 -14.39761 -13.99310 -13.92071 -13.65651 -13.31399 -12.95284 -12.56365 -12.25590 -12.06011 -11.89702 -11.66075 -11.53435 -11.52312 -11.46899 -11.04122 -10.91576 -10.61489 -10.56219 -10.49260 -10.38650 -10.18608 -10.06495 -9.95911 -9.53683 -9.36596 -8.63059 -8.57907 -8.03648 -7.65526 -6.07416 -4.06169 0.66670 1.26896 2.05168 2.14114 2.29658 3.04310 3.29976 3.35734 3.37533 3.51487 3.78788 3.87017 3.98842 4.31605 4.40180 4.72120 4.80535 4.83518 4.92231 4.94477 5.03811 5.10753 5.20149 5.25061 5.31574 5.34433 5.40283 5.61884 5.73364 5.78787 5.78946 5.88912 5.93723 5.97438 6.09991 6.12284 6.19862 6.34315 6.38332 6.54027 6.55393 6.73183 6.88012 7.05635 7.24309 7.50978 7.62826 8.13607 8.43808 8.48638 8.95987 9.12113 9.52508 11.06116 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010337 B = 0.004048 C = 0.003642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2708.112908 B = 6915.981269 C = 7686.323224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.073 3.927 3 Si 0.876 3.124 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.265 1.265 7 C -0.529 4.529 8 H 0.074 0.926 9 C 0.231 3.769 10 N -0.595 5.595 11 C 0.139 3.861 12 C -0.169 4.169 13 C -0.184 4.184 14 C -0.172 4.172 15 C 0.702 3.298 16 O -0.570 6.570 17 N -0.683 5.683 18 C 0.210 3.790 19 C -0.112 4.112 20 C -0.085 4.085 21 C -0.134 4.134 22 C -0.081 4.081 23 C 0.088 3.912 24 N -0.087 5.087 25 N -0.299 5.299 26 C -0.018 4.018 27 C -0.023 4.023 28 N -0.286 5.286 29 H 0.264 0.736 30 H 0.033 0.967 31 H 0.038 0.962 32 H 0.094 0.906 33 H 0.068 0.932 34 H 0.109 0.891 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.096 0.904 39 H 0.416 0.584 40 H 0.150 0.850 41 H 0.134 0.866 42 H 0.134 0.866 43 H 0.141 0.859 44 H 0.203 0.797 45 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.460 -16.560 0.446 21.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.129 4.129 3 Si 0.703 3.297 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.190 1.190 7 C -0.567 4.567 8 H 0.092 0.908 9 C 0.110 3.890 10 N -0.328 5.328 11 C 0.015 3.985 12 C -0.188 4.188 13 C -0.221 4.221 14 C -0.210 4.210 15 C 0.404 3.596 16 O -0.446 6.446 17 N -0.337 5.337 18 C 0.108 3.892 19 C -0.133 4.133 20 C -0.105 4.105 21 C -0.154 4.154 22 C -0.102 4.102 23 C -0.005 4.005 24 N 0.020 4.980 25 N -0.139 5.139 26 C -0.200 4.200 27 C -0.205 4.205 28 N -0.126 5.126 29 H 0.074 0.926 30 H 0.051 0.949 31 H 0.056 0.944 32 H 0.112 0.888 33 H 0.086 0.914 34 H 0.127 0.873 35 H 0.108 0.892 36 H 0.109 0.891 37 H 0.111 0.889 38 H 0.114 0.886 39 H 0.262 0.738 40 H 0.168 0.832 41 H 0.152 0.848 42 H 0.152 0.848 43 H 0.159 0.841 44 H 0.220 0.780 45 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 14.637 -15.198 -1.127 21.130 hybrid contribution -0.326 0.031 1.332 1.372 sum 14.310 -15.167 0.205 20.853 Atomic orbital electron populations 1.69897 1.06213 1.26948 1.50529 1.24839 0.94743 0.98881 0.94462 0.86859 0.80173 0.83826 0.78865 1.19901 1.21091 1.19018 1.21342 0.89249 0.94834 1.51314 0.90831 1.19628 0.95557 0.76267 0.97517 1.47129 1.67150 1.15940 1.02594 1.21056 0.93383 0.96623 0.87449 1.22968 0.96777 0.98571 1.00518 1.23016 0.99654 0.96917 1.02537 1.22903 1.03553 1.03952 0.90586 1.15869 0.78236 0.80366 0.85088 1.90902 1.57867 1.66015 1.29841 1.43427 1.67859 1.14114 1.08312 1.17241 0.95137 0.88340 0.88457 1.21212 0.98082 1.01478 0.92535 1.21226 0.97840 0.94532 0.96876 1.20935 1.01537 0.94094 0.98809 1.20694 0.98364 1.00920 0.90272 1.17280 1.06184 0.89471 0.87570 1.44760 1.40530 1.05212 1.07494 1.73641 1.18423 1.27825 0.93986 1.24920 1.03231 0.89535 1.02290 1.24860 1.04210 1.02008 0.89447 1.74076 1.16223 0.96768 1.25553 0.92580 0.94878 0.94373 0.88809 0.91357 0.87321 0.89181 0.89126 0.88853 0.88573 0.73849 0.83240 0.84843 0.84781 0.84083 0.78020 0.78099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.88 13.96 55.43 0.77 -27.11 16 2 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 3 Si 0.88 21.55 27.47 -169.99 -4.67 16.88 16 4 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.27 -6.10 6.54 56.52 0.37 -5.73 16 7 C -0.53 -15.32 9.94 -34.44 -0.34 -15.66 16 8 H 0.07 2.37 8.06 -52.49 -0.42 1.95 16 9 C 0.23 5.65 4.23 -5.20 -0.02 5.63 16 10 N -0.60 -12.58 2.46 -180.81 -0.44 -13.03 16 11 C 0.14 2.32 5.50 -4.04 -0.02 2.30 16 12 C -0.17 -2.32 6.01 -90.62 -0.54 -2.87 16 13 C -0.18 -2.12 10.18 -26.73 -0.27 -2.39 16 14 C -0.17 -1.88 10.25 -26.73 -0.27 -2.15 16 15 C 0.70 15.25 8.01 -86.92 -0.70 14.55 16 16 O -0.57 -14.28 13.72 5.29 0.07 -14.21 16 17 N -0.68 -12.28 4.58 -14.11 -0.06 -12.34 16 18 C 0.21 3.51 6.26 -83.51 -0.52 2.99 16 19 C -0.11 -1.72 8.65 -39.42 -0.34 -2.06 16 20 C -0.09 -1.00 10.04 -39.58 -0.40 -1.40 16 21 C -0.13 -1.41 10.04 -39.57 -0.40 -1.81 16 22 C -0.08 -1.00 9.58 -39.43 -0.38 -1.38 16 23 C 0.09 1.34 6.73 -83.39 -0.56 0.78 16 24 N -0.09 -1.32 4.13 32.58 0.13 -1.18 16 25 N -0.30 -4.37 8.68 30.69 0.27 -4.10 16 26 C -0.02 -0.20 12.20 -17.17 -0.21 -0.41 16 27 C -0.02 -0.24 12.20 -17.17 -0.21 -0.45 16 28 N -0.29 -3.86 11.23 30.69 0.34 -3.51 16 29 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 30 H 0.03 0.76 7.13 -51.93 -0.37 0.39 16 31 H 0.04 0.99 6.85 -51.93 -0.36 0.63 16 32 H 0.09 1.60 8.07 -51.93 -0.42 1.18 16 33 H 0.07 1.06 6.02 -51.93 -0.31 0.75 16 34 H 0.11 1.61 8.14 -51.93 -0.42 1.19 16 35 H 0.09 1.03 7.91 -51.93 -0.41 0.62 16 36 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 38 H 0.10 0.96 8.14 -51.92 -0.42 0.54 16 39 H 0.42 6.77 3.78 -40.82 -0.15 6.62 16 40 H 0.15 2.52 6.53 -52.49 -0.34 2.17 16 41 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 42 H 0.13 0.98 8.06 -52.49 -0.42 0.55 16 43 H 0.14 1.53 7.64 -52.49 -0.40 1.13 16 44 H 0.20 1.44 8.06 -52.49 -0.42 1.02 16 45 H 0.20 1.20 8.06 -52.49 -0.42 0.77 16 LS Contribution 377.35 15.07 5.69 5.69 Total: -1.00 -36.24 377.35 -8.92 -45.16 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: -5.74 Total: 10.06 kcal Atomic # 6 Polarization: 2.99 SS G_CDS: -5.29 Total: -2.30 kcal Atomic # 7 Polarization: -62.28 SS G_CDS: 1.01 Total: -61.27 kcal Atomic # 8 Polarization: -14.28 SS G_CDS: 0.07 Total: -14.21 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.67 Total: 16.88 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -36.24 -8.92 -45.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889447402.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 216.499 kcal (2) G-P(sol) polarization free energy of solvation -36.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 180.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.160 kcal (6) G-S(sol) free energy of system = (1) + (5) 171.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds