Wall clock time and date at job start Sat Apr 11 2020 06:19:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 120.00000 * 2 1 4 4 H 1.48497 * 109.47210 * 270.00097 * 3 2 1 5 5 H 1.48502 * 109.46948 * 30.00039 * 3 2 1 6 6 H 1.48502 * 109.47225 * 149.99985 * 3 2 1 7 7 C 1.37878 * 120.00414 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99972 * 359.97438 * 7 2 1 9 9 C 1.50694 * 120.00565 * 180.02562 * 7 2 1 10 10 N 1.46495 * 109.47645 * 179.97438 * 9 7 2 11 11 C 1.46493 * 120.00229 * 270.00053 * 10 9 7 12 12 C 1.53004 * 109.47046 * 269.99389 * 11 10 9 13 13 C 1.53001 * 117.50132 * 243.61770 * 12 11 10 14 14 C 1.52999 * 59.99971 * 252.51114 * 13 12 11 15 15 C 1.34781 * 120.00129 * 89.99260 * 10 9 7 16 16 O 1.21591 * 119.99859 * 0.02562 * 15 10 9 17 17 N 1.34771 * 120.00174 * 180.02562 * 15 10 9 18 18 C 1.39966 * 119.99955 * 185.34037 * 17 15 10 19 19 C 1.38753 * 120.10377 * 34.86317 * 18 17 15 20 20 C 1.38154 * 119.99767 * 180.02562 * 19 18 17 21 21 C 1.38333 * 120.20081 * 359.97438 * 20 19 18 22 22 C 1.38166 * 120.19728 * 0.02562 * 21 20 19 23 23 C 1.38722 * 120.00399 * 0.02562 * 22 21 20 24 24 N 1.40232 * 120.09835 * 179.97438 * 23 22 21 25 25 N 1.28596 * 124.61195 * 174.73616 * 24 23 22 26 26 C 1.31454 * 108.72233 * 179.82933 * 25 24 23 27 27 C 1.39694 * 105.88866 * 0.41498 * 26 25 24 28 28 N 1.28601 * 124.61103 * 355.03853 * 24 23 22 29 29 H 0.96994 * 120.00197 * 0.02562 * 1 2 3 30 30 H 1.08996 * 109.47410 * 59.99077 * 9 7 2 31 31 H 1.09003 * 109.46708 * 299.99512 * 9 7 2 32 32 H 1.09001 * 109.47173 * 29.99413 * 11 10 9 33 33 H 1.09005 * 109.47755 * 149.99785 * 11 10 9 34 34 H 1.09000 * 115.54570 * 29.33180 * 12 11 10 35 35 H 1.08993 * 117.49602 * 0.02562 * 13 12 11 36 36 H 1.08996 * 117.49524 * 145.02159 * 13 12 11 37 37 H 1.09002 * 117.50012 * 252.50620 * 14 13 12 38 38 H 1.09010 * 117.49539 * 107.49433 * 14 13 12 39 39 H 0.97000 * 120.00501 * 5.33423 * 17 15 10 40 40 H 1.07998 * 120.00053 * 0.02562 * 19 18 17 41 41 H 1.08002 * 119.90495 * 180.25886 * 20 19 18 42 42 H 1.07999 * 119.90361 * 180.02562 * 21 20 19 43 43 H 1.08000 * 119.99511 * 179.97438 * 22 21 20 44 44 H 1.07997 * 127.05448 * 180.16559 * 26 25 24 45 45 H 1.07994 * 127.05865 * 179.72372 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4647 -2.1294 -0.0005 9 6 3.5116 -1.1940 0.0000 10 7 4.0000 -2.5752 -0.0001 11 6 4.2437 -3.2661 1.2685 12 6 5.6886 -3.0258 1.7107 13 6 6.6120 -4.2425 1.7992 14 6 6.1087 -3.5695 3.0777 15 6 4.2250 -3.2103 -1.1674 16 8 4.0230 -2.6368 -2.2203 17 7 4.6738 -4.4811 -1.1675 18 6 5.0138 -5.1031 -2.3744 19 6 5.5864 -4.3652 -3.4004 20 6 5.9207 -4.9812 -4.5910 21 6 5.6868 -6.3336 -4.7644 22 6 5.1170 -7.0762 -3.7481 23 6 4.7772 -6.4659 -2.5496 24 7 4.1983 -7.2177 -1.5169 25 7 3.9388 -6.7656 -0.3414 26 6 3.3992 -7.7292 0.3716 27 6 3.3504 -8.8447 -0.4678 28 7 3.8598 -8.4544 -1.6151 29 1 -0.4850 0.8400 -0.0004 30 1 3.8746 -0.6807 0.8904 31 1 3.8752 -0.6797 -0.8895 32 1 3.5626 -2.8821 2.0280 33 1 4.0768 -4.3353 1.1379 34 1 6.1283 -2.0822 1.3876 35 1 6.1903 -5.2141 1.5419 36 1 7.6595 -4.0996 1.5340 37 1 6.8252 -2.9840 3.6538 38 1 5.3558 -4.0986 3.6621 39 1 4.7613 -4.9647 -0.3312 40 1 5.7708 -3.3093 -3.2684 41 1 6.3701 -4.4063 -5.3871 42 1 5.9504 -6.8104 -5.6969 43 1 4.9355 -8.1318 -3.8871 44 1 3.0661 -7.6715 1.3973 45 1 2.9722 -9.8265 -0.2242 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889447402.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:00 Heat of formation + Delta-G solvation = 148.345661 kcal Electronic energy + Delta-G solvation = -30257.062476 eV Core-core repulsion = 26278.875633 eV Total energy + Delta-G solvation = -3978.186843 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -44.86003 -41.84567 -40.06120 -38.49486 -36.44434 -35.90009 -34.81355 -34.58034 -33.54991 -31.32332 -30.66210 -29.74344 -27.77186 -25.28517 -25.17710 -24.19723 -23.28062 -22.84765 -22.36103 -22.00950 -20.71583 -19.58517 -19.17958 -19.10791 -18.34202 -17.83503 -16.92079 -16.81079 -16.39340 -16.24756 -16.02353 -15.87727 -15.45812 -15.42784 -15.05378 -14.93928 -14.77661 -14.49878 -14.10782 -13.90008 -13.49324 -13.08926 -12.94216 -12.85231 -12.64831 -12.48334 -12.44493 -12.37073 -12.09334 -12.00311 -11.78882 -11.58637 -11.49958 -11.40873 -11.33555 -11.17782 -10.83834 -10.82399 -9.72423 -9.55671 -8.98069 -8.34860 -6.40521 -0.34044 0.20816 1.07127 1.17749 1.31944 1.36934 1.45113 1.47933 1.59655 2.07144 2.30486 2.69095 2.71502 2.98403 3.02396 3.10401 3.74811 3.75677 3.90380 3.93759 4.02885 4.05179 4.14523 4.18526 4.31664 4.33494 4.49211 4.54486 4.65917 4.73338 4.75049 4.79797 4.87239 4.93821 4.99509 5.02404 5.18815 5.20379 5.26370 5.30395 5.39246 5.42119 5.48361 5.51662 5.61753 5.91211 6.00331 6.24549 6.59787 6.90567 7.20612 7.20970 7.50439 8.82532 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010337 B = 0.004048 C = 0.003642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2708.112908 B = 6915.981269 C = 7686.323224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.013 3.987 3 Si 0.950 3.050 4 H -0.275 1.275 5 H -0.274 1.274 6 H -0.236 1.236 7 C -0.537 4.537 8 H 0.022 0.978 9 C 0.244 3.756 10 N -0.603 5.603 11 C 0.141 3.859 12 C -0.191 4.191 13 C -0.174 4.174 14 C -0.149 4.149 15 C 0.697 3.303 16 O -0.616 6.616 17 N -0.670 5.670 18 C 0.166 3.834 19 C -0.130 4.130 20 C -0.082 4.082 21 C -0.111 4.111 22 C -0.085 4.085 23 C 0.079 3.921 24 N -0.111 5.111 25 N -0.337 5.337 26 C -0.014 4.014 27 C -0.010 4.010 28 N -0.307 5.307 29 H 0.269 0.731 30 H 0.055 0.945 31 H 0.023 0.977 32 H 0.084 0.916 33 H 0.076 0.924 34 H 0.097 0.903 35 H 0.090 0.910 36 H 0.100 0.900 37 H 0.111 0.889 38 H 0.108 0.892 39 H 0.422 0.578 40 H 0.124 0.876 41 H 0.165 0.835 42 H 0.179 0.821 43 H 0.158 0.842 44 H 0.237 0.763 45 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.611 -18.188 0.912 24.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.185 4.185 3 Si 0.772 3.228 4 H -0.201 1.201 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.576 4.576 8 H 0.040 0.960 9 C 0.121 3.879 10 N -0.335 5.335 11 C 0.018 3.982 12 C -0.210 4.210 13 C -0.211 4.211 14 C -0.186 4.186 15 C 0.399 3.601 16 O -0.496 6.496 17 N -0.325 5.325 18 C 0.066 3.934 19 C -0.152 4.152 20 C -0.101 4.101 21 C -0.130 4.130 22 C -0.106 4.106 23 C -0.014 4.014 24 N -0.003 5.003 25 N -0.177 5.177 26 C -0.196 4.196 27 C -0.192 4.192 28 N -0.146 5.146 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.042 0.958 32 H 0.103 0.897 33 H 0.094 0.906 34 H 0.116 0.884 35 H 0.108 0.892 36 H 0.119 0.881 37 H 0.129 0.871 38 H 0.126 0.874 39 H 0.269 0.731 40 H 0.142 0.858 41 H 0.182 0.818 42 H 0.197 0.803 43 H 0.176 0.824 44 H 0.254 0.746 45 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges 16.836 -16.893 -0.647 23.859 hybrid contribution -1.087 0.273 1.166 1.618 sum 15.749 -16.621 0.520 22.903 Atomic orbital electron populations 1.70056 1.08309 1.28383 1.51852 1.25849 0.95669 1.03343 0.93660 0.85688 0.79919 0.78087 0.79081 1.20081 1.19867 1.15881 1.21530 0.91615 0.93057 1.51389 0.96009 1.19281 0.92493 0.78575 0.97525 1.47084 1.67060 1.15194 1.04198 1.21194 0.95405 0.96460 0.85175 1.22713 0.95136 0.99351 1.03817 1.23051 0.99560 0.95773 1.02748 1.23039 1.03344 1.02639 0.89561 1.16081 0.78118 0.81423 0.84528 1.90843 1.59966 1.67418 1.31382 1.43144 1.67417 1.12511 1.09464 1.17538 0.97823 0.89464 0.88550 1.21206 0.99342 1.00540 0.94067 1.21580 0.96981 0.95469 0.96031 1.21444 0.98654 0.93271 0.99620 1.21054 0.98044 1.01850 0.89605 1.17559 1.06069 0.89068 0.88726 1.44811 1.42149 1.05699 1.07609 1.73576 1.19899 1.29583 0.94645 1.25664 1.01454 0.88969 1.03503 1.25674 1.02112 1.03352 0.88064 1.74040 1.17080 0.96371 1.27085 0.92222 0.92681 0.95849 0.89744 0.90614 0.88431 0.89160 0.88137 0.87070 0.87375 0.73118 0.85760 0.81770 0.80334 0.82434 0.74630 0.73784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.02 13.96 21.45 0.30 -60.72 16 2 C 0.01 0.77 5.47 84.65 0.46 1.23 16 3 Si 0.95 45.03 27.47 68.60 1.88 46.91 16 4 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 5 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 6 H -0.24 -9.97 6.54 99.48 0.65 -9.32 16 7 C -0.54 -32.72 9.94 25.60 0.25 -32.47 16 8 H 0.02 1.50 8.06 -2.91 -0.02 1.48 16 9 C 0.24 12.33 4.23 85.63 0.36 12.69 16 10 N -0.60 -26.80 2.46 -844.22 -2.07 -28.87 16 11 C 0.14 4.82 5.50 86.38 0.48 5.29 16 12 C -0.19 -5.18 6.01 -10.79 -0.06 -5.25 16 13 C -0.17 -3.78 10.18 30.59 0.31 -3.46 16 14 C -0.15 -2.91 10.25 30.59 0.31 -2.59 16 15 C 0.70 32.23 8.01 179.05 1.43 33.66 16 16 O -0.62 -33.13 13.72 -4.00 -0.05 -33.18 16 17 N -0.67 -25.50 4.58 -316.82 -1.45 -26.95 16 18 C 0.17 5.81 6.26 38.25 0.24 6.05 16 19 C -0.13 -4.19 8.65 22.37 0.19 -4.00 16 20 C -0.08 -1.83 10.04 22.27 0.22 -1.60 16 21 C -0.11 -2.04 10.04 22.28 0.22 -1.82 16 22 C -0.08 -1.97 9.58 22.37 0.21 -1.76 16 23 C 0.08 2.43 6.73 38.20 0.26 2.69 16 24 N -0.11 -3.35 4.13 -50.83 -0.21 -3.56 16 25 N -0.34 -9.87 8.68 -56.81 -0.49 -10.36 16 26 C -0.01 -0.28 12.20 85.10 1.04 0.76 16 27 C -0.01 -0.18 12.20 85.10 1.04 0.86 16 28 N -0.31 -7.87 11.23 -56.82 -0.64 -8.51 16 29 H 0.27 16.05 8.31 -92.71 -0.77 15.28 16 30 H 0.06 2.54 7.13 -2.39 -0.02 2.52 16 31 H 0.02 1.26 6.85 -2.39 -0.02 1.24 16 32 H 0.08 2.98 8.07 -2.39 -0.02 2.96 16 33 H 0.08 2.43 6.02 -2.38 -0.01 2.41 16 34 H 0.10 2.89 8.14 -2.39 -0.02 2.87 16 35 H 0.09 1.96 7.91 -2.39 -0.02 1.94 16 36 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.11 1.88 8.14 -2.38 -0.02 1.86 16 39 H 0.42 14.36 3.78 -92.71 -0.35 14.01 16 40 H 0.12 4.57 6.53 -2.91 -0.02 4.55 16 41 H 0.16 2.56 8.06 -2.91 -0.02 2.54 16 42 H 0.18 1.73 8.06 -2.91 -0.02 1.70 16 43 H 0.16 3.09 7.64 -2.91 -0.02 3.07 16 44 H 0.24 2.76 8.06 -2.91 -0.02 2.73 16 45 H 0.25 1.93 8.06 -2.91 -0.02 1.90 16 Total: -1.00 -86.35 377.35 4.86 -81.49 By element: Atomic # 1 Polarization: 32.84 SS G_CDS: 0.62 Total: 33.46 kcal Atomic # 6 Polarization: 3.31 SS G_CDS: 6.98 Total: 10.29 kcal Atomic # 7 Polarization: -134.41 SS G_CDS: -4.57 Total: -138.98 kcal Atomic # 8 Polarization: -33.13 SS G_CDS: -0.05 Total: -33.18 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 1.88 Total: 46.91 kcal Total: -86.35 4.86 -81.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889447402.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 229.839 kcal (2) G-P(sol) polarization free energy of solvation -86.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 143.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 148.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds