Wall clock time and date at job start Sat Apr 11 2020 06:19:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99882 * 2 1 4 4 H 1.48497 * 109.46809 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47047 * 299.99835 * 3 2 1 6 6 H 1.48500 * 109.47206 * 59.99911 * 3 2 1 7 7 C 1.37878 * 119.99521 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99354 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00353 * 359.97438 * 7 2 1 10 10 H 1.08996 * 109.47324 * 300.00357 * 9 7 2 11 11 O 1.42905 * 109.46733 * 60.00474 * 9 7 2 12 12 C 1.53004 * 109.47285 * 179.97438 * 9 7 2 13 13 N 1.46900 * 109.47013 * 180.02562 * 12 9 7 14 14 C 1.46845 * 110.99454 * 170.00452 * 13 12 9 15 15 C 1.53036 * 109.52139 * 185.83997 * 14 13 12 16 16 C 1.53124 * 109.27798 * 300.82022 * 15 14 13 17 17 C 1.53002 * 109.52181 * 177.56156 * 16 15 14 18 18 H 1.09006 * 109.46778 * 300.12311 * 17 16 15 19 19 O 1.42896 * 109.47618 * 60.12666 * 17 16 15 20 20 C 1.50698 * 109.46831 * 180.12910 * 17 16 15 21 21 C 1.38212 * 119.99671 * 264.99314 * 20 17 16 22 22 C 1.38427 * 119.99619 * 180.02562 * 21 20 17 23 23 F 1.35104 * 119.99598 * 180.02562 * 22 21 20 24 24 C 1.38475 * 120.00351 * 359.97438 * 22 21 20 25 25 C 1.38162 * 119.99809 * 0.02562 * 24 22 21 26 26 C 1.38429 * 120.00521 * 85.27583 * 20 17 16 27 27 F 1.35106 * 119.99517 * 0.02562 * 26 20 17 28 28 C 1.53113 * 109.21286 * 57.62110 * 16 15 14 29 29 C 1.46841 * 111.00232 * 294.21062 * 13 12 9 30 30 H 0.97004 * 119.99890 * 0.02562 * 1 2 3 31 31 H 0.96697 * 114.00341 * 60.00009 * 11 9 7 32 32 H 1.09005 * 109.46413 * 60.00413 * 12 9 7 33 33 H 1.08996 * 109.47491 * 300.00573 * 12 9 7 34 34 H 1.09005 * 109.46664 * 65.82717 * 14 13 12 35 35 H 1.08997 * 109.46631 * 305.85396 * 14 13 12 36 36 H 1.09004 * 109.50527 * 180.87950 * 15 14 13 37 37 H 1.09000 * 109.53805 * 60.77909 * 15 14 13 38 38 H 1.09003 * 109.52151 * 297.68401 * 16 15 14 39 39 H 0.96705 * 113.99917 * 59.99539 * 19 17 16 40 40 H 1.07991 * 119.99825 * 0.02562 * 21 20 17 41 41 H 1.07999 * 120.00030 * 180.02562 * 24 22 21 42 42 H 1.08002 * 119.99592 * 179.97438 * 25 24 22 43 43 H 1.09003 * 109.50354 * 62.31907 * 28 16 15 44 44 H 1.09002 * 109.50703 * 182.43619 * 28 16 15 45 45 H 1.09003 * 109.46979 * 294.18307 * 29 13 12 46 46 H 1.09004 * 109.46330 * 54.15983 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0017 10 1 0.6246 -2.5563 0.8919 11 8 0.4290 -2.5756 -1.1648 12 6 2.2452 -3.6622 0.0015 13 7 1.5106 -4.9343 0.0020 14 6 2.4166 -6.0651 -0.2362 15 6 1.6017 -7.3531 -0.3738 16 6 0.7965 -7.5813 0.9085 17 6 -0.0668 -8.8350 0.7538 18 1 -0.7486 -8.7052 -0.0868 19 8 0.7736 -9.9658 0.5151 20 6 -0.8611 -9.0567 2.0151 21 6 -0.3821 -9.9084 2.9926 22 6 -1.1119 -10.1124 4.1510 23 9 -0.6435 -10.9446 5.1067 24 6 -2.3216 -9.4628 4.3308 25 6 -2.8003 -8.6114 3.3536 26 6 -2.0731 -8.4119 2.1923 27 9 -2.5443 -7.5841 1.2341 28 6 -0.1032 -6.3684 1.1611 29 6 0.7611 -5.1087 1.2526 30 1 -0.4850 0.8401 -0.0004 31 1 0.9209 -2.5308 -1.9962 32 1 2.8724 -3.6040 0.8910 33 1 2.8712 -3.6048 -0.8889 34 1 3.1071 -6.1601 0.6019 35 1 2.9801 -5.8922 -1.1531 36 1 2.2755 -8.1946 -0.5350 37 1 0.9206 -7.2649 -1.2203 38 1 1.4786 -7.7103 1.7488 39 1 1.4073 -10.1414 1.2242 40 1 0.5614 -10.4147 2.8525 41 1 -2.8908 -9.6217 5.2347 42 1 -3.7440 -8.1051 3.4937 43 1 -0.8118 -6.2635 0.3396 44 1 -0.6466 -6.5068 2.0958 45 1 1.4593 -5.2081 2.0837 46 1 0.1220 -4.2412 1.4170 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930695635.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:17 Heat of formation + Delta-G solvation = -166.575844 kcal Electronic energy + Delta-G solvation = -30506.724970 eV Core-core repulsion = 26031.900169 eV Total energy + Delta-G solvation = -4474.824801 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.29021 -49.19777 -40.16522 -38.63073 -37.14557 -35.45224 -33.21375 -32.05484 -31.76268 -30.68001 -30.27187 -28.43488 -26.59437 -24.56634 -23.39575 -22.95385 -22.75618 -21.42671 -20.21308 -19.61335 -18.42585 -17.63817 -17.54775 -17.08133 -16.57532 -16.23500 -15.76365 -15.25552 -15.13417 -14.78868 -14.76472 -14.58639 -14.53115 -14.40294 -14.11890 -13.75650 -13.61517 -13.35287 -13.07053 -12.93663 -12.69494 -12.51732 -12.30396 -11.96997 -11.80759 -11.65239 -11.22065 -11.06959 -10.94997 -10.92051 -10.77126 -10.66373 -10.50039 -10.18022 -10.05717 -9.93956 -9.47697 -8.94147 -8.84274 -8.54671 -8.06054 -7.59206 -5.98798 -4.16971 0.54858 0.60336 2.93341 3.27038 3.35332 3.38439 3.69295 3.81244 4.04469 4.04588 4.23966 4.33099 4.48541 4.53259 4.66983 4.71893 4.84374 5.02522 5.24310 5.25237 5.29118 5.42928 5.47903 5.53702 5.57592 5.62719 5.66004 5.75402 5.79606 5.87820 5.94673 5.96737 6.12632 6.18196 6.31955 6.32648 6.37552 6.48635 6.50932 6.64628 6.84616 7.22785 7.59914 7.67932 7.81177 7.91454 8.22970 8.87281 9.49060 9.65731 11.05234 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017222 B = 0.002582 C = 0.002441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.427813 B =10839.952967 C =11466.623209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.079 3.921 3 Si 0.888 3.112 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.574 4.574 8 H 0.054 0.946 9 C 0.237 3.763 10 H 0.054 0.946 11 O -0.553 6.553 12 C 0.031 3.969 13 N -0.525 5.525 14 C 0.054 3.946 15 C -0.102 4.102 16 C -0.111 4.111 17 C 0.153 3.847 18 H 0.118 0.882 19 O -0.548 6.548 20 C -0.117 4.117 21 C -0.122 4.122 22 C 0.091 3.909 23 F -0.136 7.136 24 C -0.127 4.127 25 C -0.122 4.122 26 C 0.104 3.896 27 F -0.123 7.123 28 C -0.109 4.109 29 C 0.059 3.941 30 H 0.259 0.741 31 H 0.342 0.658 32 H 0.024 0.976 33 H 0.063 0.937 34 H 0.021 0.979 35 H 0.071 0.929 36 H 0.067 0.933 37 H 0.073 0.927 38 H 0.069 0.931 39 H 0.372 0.628 40 H 0.143 0.857 41 H 0.146 0.854 42 H 0.149 0.851 43 H 0.080 0.920 44 H 0.058 0.942 45 H 0.020 0.980 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.053 -22.273 6.796 23.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.127 4.127 3 Si 0.715 3.285 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.209 1.209 7 C -0.612 4.612 8 H 0.072 0.928 9 C 0.179 3.821 10 H 0.071 0.929 11 O -0.355 6.355 12 C -0.096 4.096 13 N -0.249 5.249 14 C -0.074 4.074 15 C -0.140 4.140 16 C -0.130 4.130 17 C 0.094 3.906 18 H 0.136 0.864 19 O -0.353 6.353 20 C -0.118 4.118 21 C -0.141 4.141 22 C 0.071 3.929 23 F -0.114 7.114 24 C -0.146 4.146 25 C -0.141 4.141 26 C 0.085 3.915 27 F -0.101 7.101 28 C -0.147 4.147 29 C -0.069 4.069 30 H 0.069 0.931 31 H 0.185 0.815 32 H 0.042 0.958 33 H 0.081 0.919 34 H 0.040 0.960 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.092 0.908 38 H 0.087 0.913 39 H 0.220 0.780 40 H 0.161 0.839 41 H 0.163 0.837 42 H 0.167 0.833 43 H 0.099 0.901 44 H 0.076 0.924 45 H 0.038 0.962 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -3.378 -22.227 6.325 23.355 hybrid contribution 1.883 1.093 1.050 2.417 sum -1.496 -21.134 7.375 22.434 Atomic orbital electron populations 1.70096 1.05878 1.26230 1.47154 1.25025 0.94682 0.99048 0.93911 0.86636 0.80196 0.83966 0.77680 1.19783 1.20850 1.20944 1.21701 0.93150 0.91678 1.54691 0.92765 1.19316 0.87770 0.88505 0.86505 0.92878 1.86559 1.37676 1.96303 1.14943 1.23069 0.97240 0.89933 0.99397 1.61932 1.26896 1.01754 1.34339 1.22070 0.93992 0.91291 1.00049 1.21525 0.98852 0.96681 0.96904 1.21897 0.97461 0.94288 0.99351 1.20917 0.90650 0.85606 0.93401 0.86417 1.86659 1.51940 1.48403 1.48324 1.20541 0.95034 0.97597 0.98659 1.20686 1.01252 0.99927 0.92192 1.17585 0.94503 0.93431 0.87361 1.91525 1.88368 1.69278 1.62273 1.21008 0.95314 0.97554 1.00747 1.21058 1.01269 0.99559 0.92217 1.17426 0.93375 0.92938 0.87777 1.91587 1.87971 1.68862 1.61715 1.21711 0.97907 0.93177 1.01910 1.22036 0.96628 0.98268 0.89971 0.93085 0.81490 0.95792 0.91892 0.96036 0.91087 0.91460 0.90834 0.91282 0.77993 0.83917 0.83670 0.83341 0.90112 0.92362 0.96156 0.89539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.43 12.84 55.43 0.71 -24.72 16 2 C 0.08 2.23 5.40 -17.82 -0.10 2.13 16 3 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 4 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.57 -15.76 8.76 -34.44 -0.30 -16.06 16 8 H 0.05 1.46 7.74 -52.48 -0.41 1.05 16 9 C 0.24 6.00 2.70 -27.88 -0.08 5.93 16 10 H 0.05 1.48 6.43 -51.93 -0.33 1.14 16 11 O -0.55 -14.48 12.59 -35.23 -0.44 -14.93 16 12 C 0.03 0.64 4.56 -3.82 -0.02 0.62 16 13 N -0.52 -9.44 4.52 -234.67 -1.06 -10.50 16 14 C 0.05 0.79 5.46 -3.84 -0.02 0.77 16 15 C -0.10 -1.24 5.20 -26.65 -0.14 -1.38 16 16 C -0.11 -1.26 2.01 -90.50 -0.18 -1.44 16 17 C 0.15 1.55 2.66 -27.88 -0.07 1.47 16 18 H 0.12 1.31 7.78 -51.93 -0.40 0.91 16 19 O -0.55 -5.06 12.37 -35.23 -0.44 -5.50 16 20 C -0.12 -1.12 4.67 -104.56 -0.49 -1.61 16 21 C -0.12 -1.02 9.28 -39.52 -0.37 -1.39 16 22 C 0.09 0.79 7.30 -39.42 -0.29 0.50 16 23 F -0.14 -1.26 17.27 2.25 0.04 -1.22 16 24 C -0.13 -0.98 10.02 -39.52 -0.40 -1.37 16 25 C -0.12 -1.01 10.02 -39.53 -0.40 -1.41 16 26 C 0.10 1.06 5.72 -39.43 -0.23 0.84 16 27 F -0.12 -1.46 14.33 2.25 0.03 -1.43 16 28 C -0.11 -1.52 3.90 -26.65 -0.10 -1.62 16 29 C 0.06 1.01 5.29 -3.84 -0.02 0.99 16 30 H 0.26 7.26 8.31 -40.82 -0.34 6.93 16 31 H 0.34 8.09 9.04 45.56 0.41 8.50 16 32 H 0.02 0.50 8.12 -51.93 -0.42 0.07 16 33 H 0.06 1.27 7.99 -51.93 -0.41 0.86 16 34 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.07 1.02 8.01 -51.93 -0.42 0.60 16 36 H 0.07 0.72 7.77 -51.93 -0.40 0.32 16 37 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.37 2.17 7.32 45.56 0.33 2.51 16 40 H 0.14 0.88 6.40 -52.49 -0.34 0.55 16 41 H 0.15 0.79 8.06 -52.49 -0.42 0.36 16 42 H 0.15 0.95 8.06 -52.49 -0.42 0.53 16 43 H 0.08 1.24 7.43 -51.93 -0.39 0.85 16 44 H 0.06 0.76 5.97 -51.93 -0.31 0.45 16 45 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 46 H 0.09 1.72 6.21 -51.93 -0.32 1.40 16 LS Contribution 370.98 15.07 5.59 5.59 Total: -1.00 -31.63 370.98 -8.86 -40.49 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: -5.08 Total: 9.10 kcal Atomic # 6 Polarization: -9.85 SS G_CDS: -3.19 Total: -13.04 kcal Atomic # 7 Polarization: -34.87 SS G_CDS: -0.35 Total: -35.22 kcal Atomic # 8 Polarization: -19.55 SS G_CDS: -0.88 Total: -20.43 kcal Atomic # 9 Polarization: -2.73 SS G_CDS: 0.07 Total: -2.65 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.63 -8.86 -40.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930695635.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.082 kcal (2) G-P(sol) polarization free energy of solvation -31.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds