Wall clock time and date at job start Sat Apr 11 2020 06:19:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99882 * 2 1 4 4 H 1.48497 * 109.46809 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47047 * 299.99835 * 3 2 1 6 6 H 1.48500 * 109.47206 * 59.99911 * 3 2 1 7 7 C 1.37878 * 119.99521 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99354 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00353 * 359.97438 * 7 2 1 10 10 H 1.08996 * 109.47324 * 300.00357 * 9 7 2 11 11 O 1.42905 * 109.46733 * 60.00474 * 9 7 2 12 12 C 1.53004 * 109.47285 * 179.97438 * 9 7 2 13 13 N 1.46900 * 109.47013 * 180.02562 * 12 9 7 14 14 C 1.46845 * 110.99454 * 170.00452 * 13 12 9 15 15 C 1.53036 * 109.52139 * 185.83997 * 14 13 12 16 16 C 1.53124 * 109.27798 * 300.82022 * 15 14 13 17 17 C 1.53002 * 109.52181 * 177.56156 * 16 15 14 18 18 H 1.09006 * 109.46778 * 300.12311 * 17 16 15 19 19 O 1.42896 * 109.47618 * 60.12666 * 17 16 15 20 20 C 1.50698 * 109.46831 * 180.12910 * 17 16 15 21 21 C 1.38212 * 119.99671 * 264.99314 * 20 17 16 22 22 C 1.38427 * 119.99619 * 180.02562 * 21 20 17 23 23 F 1.35104 * 119.99598 * 180.02562 * 22 21 20 24 24 C 1.38475 * 120.00351 * 359.97438 * 22 21 20 25 25 C 1.38162 * 119.99809 * 0.02562 * 24 22 21 26 26 C 1.38429 * 120.00521 * 85.27583 * 20 17 16 27 27 F 1.35106 * 119.99517 * 0.02562 * 26 20 17 28 28 C 1.53113 * 109.21286 * 57.62110 * 16 15 14 29 29 C 1.46841 * 111.00232 * 294.21062 * 13 12 9 30 30 H 0.97004 * 119.99890 * 0.02562 * 1 2 3 31 31 H 0.96697 * 114.00341 * 60.00009 * 11 9 7 32 32 H 1.09005 * 109.46413 * 60.00413 * 12 9 7 33 33 H 1.08996 * 109.47491 * 300.00573 * 12 9 7 34 34 H 1.09005 * 109.46664 * 65.82717 * 14 13 12 35 35 H 1.08997 * 109.46631 * 305.85396 * 14 13 12 36 36 H 1.09004 * 109.50527 * 180.87950 * 15 14 13 37 37 H 1.09000 * 109.53805 * 60.77909 * 15 14 13 38 38 H 1.09003 * 109.52151 * 297.68401 * 16 15 14 39 39 H 0.96705 * 113.99917 * 59.99539 * 19 17 16 40 40 H 1.07991 * 119.99825 * 0.02562 * 21 20 17 41 41 H 1.07999 * 120.00030 * 180.02562 * 24 22 21 42 42 H 1.08002 * 119.99592 * 179.97438 * 25 24 22 43 43 H 1.09003 * 109.50354 * 62.31907 * 28 16 15 44 44 H 1.09002 * 109.50703 * 182.43619 * 28 16 15 45 45 H 1.09003 * 109.46979 * 294.18307 * 29 13 12 46 46 H 1.09004 * 109.46330 * 54.15983 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0017 10 1 0.6246 -2.5563 0.8919 11 8 0.4290 -2.5756 -1.1648 12 6 2.2452 -3.6622 0.0015 13 7 1.5106 -4.9343 0.0020 14 6 2.4166 -6.0651 -0.2362 15 6 1.6017 -7.3531 -0.3738 16 6 0.7965 -7.5813 0.9085 17 6 -0.0668 -8.8350 0.7538 18 1 -0.7486 -8.7052 -0.0868 19 8 0.7736 -9.9658 0.5151 20 6 -0.8611 -9.0567 2.0151 21 6 -0.3821 -9.9084 2.9926 22 6 -1.1119 -10.1124 4.1510 23 9 -0.6435 -10.9446 5.1067 24 6 -2.3216 -9.4628 4.3308 25 6 -2.8003 -8.6114 3.3536 26 6 -2.0731 -8.4119 2.1923 27 9 -2.5443 -7.5841 1.2341 28 6 -0.1032 -6.3684 1.1611 29 6 0.7611 -5.1087 1.2526 30 1 -0.4850 0.8401 -0.0004 31 1 0.9209 -2.5308 -1.9962 32 1 2.8724 -3.6040 0.8910 33 1 2.8712 -3.6048 -0.8889 34 1 3.1071 -6.1601 0.6019 35 1 2.9801 -5.8922 -1.1531 36 1 2.2755 -8.1946 -0.5350 37 1 0.9206 -7.2649 -1.2203 38 1 1.4786 -7.7103 1.7488 39 1 1.4073 -10.1414 1.2242 40 1 0.5614 -10.4147 2.8525 41 1 -2.8908 -9.6217 5.2347 42 1 -3.7440 -8.1051 3.4937 43 1 -0.8118 -6.2635 0.3396 44 1 -0.6466 -6.5068 2.0958 45 1 1.4593 -5.2081 2.0837 46 1 0.1220 -4.2412 1.4170 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930695635.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:16 Heat of formation + Delta-G solvation = -189.552278 kcal Electronic energy + Delta-G solvation = -30507.721303 eV Core-core repulsion = 26031.900169 eV Total energy + Delta-G solvation = -4475.821134 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -50.02022 -49.96580 -41.02556 -39.72180 -38.17623 -37.13145 -34.45835 -34.17021 -32.60515 -31.74006 -31.10176 -30.09532 -27.88317 -26.09060 -24.32619 -24.23746 -23.67372 -22.38734 -21.82986 -20.80470 -19.16671 -19.04394 -18.36211 -18.27495 -17.50231 -16.99759 -16.67663 -16.63599 -16.46135 -16.21311 -16.14475 -15.81739 -15.45126 -15.40305 -15.31554 -15.11470 -14.91233 -14.38796 -14.24239 -14.14622 -13.89783 -13.52979 -13.28659 -13.12896 -13.00663 -12.93279 -12.82458 -12.65026 -12.42580 -12.36496 -12.13257 -12.02676 -11.85627 -11.56049 -11.39267 -10.98187 -10.88581 -10.67615 -10.16244 -10.06078 -9.56679 -9.06848 -8.13018 -6.39146 -0.14307 -0.03258 1.39156 1.40279 1.52511 2.27049 2.38116 3.01462 3.06193 3.12780 3.13440 3.31295 3.36415 3.60409 3.70582 3.82699 3.88591 4.04360 4.09284 4.25791 4.31167 4.32337 4.38627 4.49756 4.53155 4.58018 4.63199 4.65330 4.79225 4.84386 4.90554 4.94442 4.97223 4.99428 5.02443 5.03343 5.08678 5.20560 5.24936 5.46162 5.61065 5.71976 5.76663 6.03079 6.24126 6.37796 6.69366 6.74918 7.35195 7.63843 8.91536 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017222 B = 0.002582 C = 0.002441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.427813 B =10839.952967 C =11466.623209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.025 3.975 3 Si 0.961 3.039 4 H -0.263 1.263 5 H -0.279 1.279 6 H -0.280 1.280 7 C -0.588 4.588 8 H 0.058 0.942 9 C 0.238 3.762 10 H 0.018 0.982 11 O -0.570 6.570 12 C 0.048 3.952 13 N -0.537 5.537 14 C 0.053 3.947 15 C -0.095 4.095 16 C -0.102 4.102 17 C 0.167 3.833 18 H 0.103 0.897 19 O -0.552 6.552 20 C -0.125 4.125 21 C -0.118 4.118 22 C 0.082 3.918 23 F -0.139 7.139 24 C -0.121 4.121 25 C -0.124 4.124 26 C 0.081 3.919 27 F -0.140 7.140 28 C -0.097 4.097 29 C 0.061 3.939 30 H 0.261 0.739 31 H 0.352 0.648 32 H 0.022 0.978 33 H 0.070 0.930 34 H 0.031 0.969 35 H 0.075 0.925 36 H 0.093 0.907 37 H 0.060 0.940 38 H 0.084 0.916 39 H 0.389 0.611 40 H 0.166 0.834 41 H 0.169 0.831 42 H 0.164 0.836 43 H 0.061 0.939 44 H 0.065 0.935 45 H 0.027 0.973 46 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.578 -23.791 7.471 24.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.178 4.178 3 Si 0.785 3.215 4 H -0.187 1.187 5 H -0.204 1.204 6 H -0.205 1.205 7 C -0.626 4.626 8 H 0.077 0.923 9 C 0.180 3.820 10 H 0.036 0.964 11 O -0.373 6.373 12 C -0.080 4.080 13 N -0.262 5.262 14 C -0.074 4.074 15 C -0.132 4.132 16 C -0.121 4.121 17 C 0.107 3.893 18 H 0.121 0.879 19 O -0.360 6.360 20 C -0.127 4.127 21 C -0.137 4.137 22 C 0.062 3.938 23 F -0.118 7.118 24 C -0.140 4.140 25 C -0.142 4.142 26 C 0.062 3.938 27 F -0.119 7.119 28 C -0.135 4.135 29 C -0.067 4.067 30 H 0.070 0.930 31 H 0.196 0.804 32 H 0.040 0.960 33 H 0.088 0.912 34 H 0.050 0.950 35 H 0.094 0.906 36 H 0.111 0.889 37 H 0.078 0.922 38 H 0.102 0.898 39 H 0.239 0.761 40 H 0.184 0.816 41 H 0.187 0.813 42 H 0.182 0.818 43 H 0.079 0.921 44 H 0.083 0.917 45 H 0.045 0.955 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -1.880 -23.771 7.005 24.853 hybrid contribution 1.394 1.501 0.880 2.229 sum -0.486 -22.270 7.885 23.630 Atomic orbital electron populations 1.70240 1.07675 1.27234 1.48480 1.25915 0.95492 1.02942 0.93425 0.85494 0.79121 0.79134 0.77705 1.18700 1.20428 1.20529 1.22088 0.93495 0.92854 1.54154 0.92345 1.19172 0.87766 0.90091 0.85007 0.96385 1.86506 1.38622 1.96463 1.15679 1.22666 0.95841 0.89888 0.99558 1.61859 1.27654 1.01857 1.34852 1.22178 0.93919 0.90768 1.00575 1.21483 0.98804 0.96182 0.96774 1.21812 0.97207 0.93613 0.99469 1.20573 0.90302 0.85202 0.93228 0.87922 1.86641 1.52318 1.47616 1.49376 1.20499 0.95006 0.98334 0.98841 1.20896 1.01991 0.99249 0.91542 1.17757 0.94952 0.93589 0.87462 1.91521 1.88448 1.69408 1.62391 1.21285 0.95056 0.96436 1.01200 1.21271 1.01746 0.99596 0.91624 1.17780 0.94295 0.93503 0.88262 1.91546 1.88261 1.69549 1.62510 1.21565 0.97448 0.92942 1.01567 1.21972 0.96492 0.98279 0.89971 0.93038 0.80427 0.95997 0.91180 0.95038 0.90624 0.88901 0.92159 0.89781 0.76053 0.81642 0.81337 0.81798 0.92062 0.91664 0.95493 0.93483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.63 12.84 21.45 0.28 -54.36 16 2 C 0.02 1.39 5.40 84.65 0.46 1.85 16 3 Si 0.96 43.72 29.54 68.60 2.03 45.75 16 4 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 5 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 6 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 7 C -0.59 -32.72 8.76 25.60 0.22 -32.50 16 8 H 0.06 3.13 7.74 -2.91 -0.02 3.11 16 9 C 0.24 12.44 2.70 29.85 0.08 12.52 16 10 H 0.02 1.08 6.43 -2.39 -0.02 1.06 16 11 O -0.57 -30.85 12.59 -148.98 -1.88 -32.73 16 12 C 0.05 2.03 4.56 86.30 0.39 2.42 16 13 N -0.54 -19.46 4.52 -896.36 -4.06 -23.51 16 14 C 0.05 1.47 5.46 86.33 0.47 1.94 16 15 C -0.09 -2.14 5.20 30.65 0.16 -1.98 16 16 C -0.10 -2.16 2.01 -10.71 -0.02 -2.18 16 17 C 0.17 3.11 2.66 29.85 0.08 3.19 16 18 H 0.10 2.25 7.78 -2.38 -0.02 2.23 16 19 O -0.55 -8.68 12.37 -148.98 -1.84 -10.52 16 20 C -0.13 -2.24 4.67 -19.83 -0.09 -2.33 16 21 C -0.12 -1.71 9.28 22.31 0.21 -1.50 16 22 C 0.08 1.24 7.30 22.37 0.16 1.40 16 23 F -0.14 -2.27 17.27 44.97 0.78 -1.49 16 24 C -0.12 -1.61 10.02 22.31 0.22 -1.39 16 25 C -0.12 -1.91 10.02 22.31 0.22 -1.68 16 26 C 0.08 1.61 5.72 22.37 0.13 1.74 16 27 F -0.14 -3.44 14.33 44.97 0.64 -2.79 16 28 C -0.10 -2.73 3.90 30.65 0.12 -2.61 16 29 C 0.06 2.14 5.29 86.33 0.46 2.60 16 30 H 0.26 14.93 8.31 -92.70 -0.77 14.16 16 31 H 0.35 17.05 9.04 -74.06 -0.67 16.38 16 32 H 0.02 0.91 8.12 -2.38 -0.02 0.89 16 33 H 0.07 2.80 7.99 -2.39 -0.02 2.78 16 34 H 0.03 0.82 8.14 -2.38 -0.02 0.80 16 35 H 0.08 2.02 8.01 -2.39 -0.02 2.00 16 36 H 0.09 1.68 7.77 -2.39 -0.02 1.66 16 37 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.39 3.12 7.32 -74.05 -0.54 2.58 16 40 H 0.17 1.50 6.40 -2.91 -0.02 1.48 16 41 H 0.17 1.37 8.06 -2.91 -0.02 1.35 16 42 H 0.16 1.90 8.06 -2.91 -0.02 1.88 16 43 H 0.06 1.96 7.43 -2.39 -0.02 1.94 16 44 H 0.06 1.73 5.97 -2.39 -0.01 1.71 16 45 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 46 H 0.05 2.00 6.21 -2.38 -0.01 1.99 16 Total: -1.00 -69.42 370.98 -0.96 -70.38 By element: Atomic # 1 Polarization: 27.97 SS G_CDS: -0.18 Total: 27.78 kcal Atomic # 6 Polarization: -21.79 SS G_CDS: 3.27 Total: -18.51 kcal Atomic # 7 Polarization: -74.09 SS G_CDS: -3.78 Total: -77.87 kcal Atomic # 8 Polarization: -39.53 SS G_CDS: -3.72 Total: -43.25 kcal Atomic # 9 Polarization: -5.71 SS G_CDS: 1.42 Total: -4.29 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Total: -69.42 -0.96 -70.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930695635.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.168 kcal (2) G-P(sol) polarization free energy of solvation -69.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds