Wall clock time and date at job start Sat Apr 11 2020 06:19:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 119.99883 * 2 1 4 4 H 1.48500 * 109.47044 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47336 * 299.99907 * 3 2 1 6 6 H 1.48496 * 109.47031 * 60.00115 * 3 2 1 7 7 C 1.38809 * 120.00153 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99957 * 179.97438 * 7 2 1 9 9 N 1.36940 * 119.99751 * 0.02562 * 7 2 1 10 10 C 1.46502 * 119.99861 * 179.97438 * 9 7 2 11 11 C 1.53944 * 113.58102 * 204.99936 * 10 9 7 12 12 C 1.52906 * 86.78578 * 220.66442 * 11 10 9 13 13 C 1.52912 * 88.03951 * 24.89766 * 12 11 10 14 14 C 1.52909 * 121.14173 * 150.61696 * 12 11 10 15 15 C 1.53949 * 86.78503 * 100.82158 * 14 12 11 16 16 N 1.46499 * 113.57939 * 139.33510 * 15 14 12 17 17 C 1.34777 * 119.99705 * 154.99868 * 16 15 14 18 18 O 1.21540 * 120.00071 * 0.02562 * 17 16 15 19 19 C 1.47977 * 119.99850 * 180.02562 * 17 16 15 20 20 C 1.39728 * 119.42772 * 179.97438 * 19 17 16 21 21 C 1.36988 * 119.60039 * 179.97438 * 20 19 17 22 22 C 1.39905 * 118.35673 * 0.03953 * 21 20 19 23 23 N 1.35436 * 133.80944 * 179.97438 * 22 21 20 24 24 C 1.30219 * 109.57331 * 180.02562 * 23 22 21 25 25 N 1.35990 * 110.17893 * 359.97438 * 24 23 22 26 26 H 0.97002 * 126.28511 * 180.02562 * 25 24 23 27 27 C 1.37934 * 107.41938 * 0.02562 * 25 24 23 28 28 N 1.31879 * 133.83375 * 180.02562 * 27 25 24 29 29 C 1.52914 * 121.13699 * 259.18300 * 12 11 10 30 30 H 0.96995 * 120.00422 * 0.02562 * 1 2 3 31 31 H 0.96999 * 120.00608 * 0.02562 * 9 7 2 32 32 H 1.09004 * 112.87672 * 336.13850 * 10 9 7 33 33 H 1.09004 * 113.66375 * 106.19206 * 11 10 9 34 34 H 1.09000 * 113.74747 * 335.14845 * 11 10 9 35 35 H 1.08991 * 113.66254 * 89.57863 * 13 12 11 36 36 H 1.09005 * 113.66015 * 220.62692 * 13 12 11 37 37 H 1.09003 * 113.65724 * 346.34752 * 14 12 11 38 38 H 1.08995 * 113.66498 * 215.29670 * 14 12 11 39 39 H 1.08995 * 113.57860 * 270.05317 * 15 14 12 40 40 H 0.96998 * 120.00036 * 335.00490 * 16 15 14 41 41 H 1.08000 * 120.19835 * 0.02562 * 20 19 17 42 42 H 1.07997 * 120.82498 * 180.31145 * 21 20 19 43 43 H 1.08004 * 124.90513 * 179.97438 * 24 23 22 44 44 H 1.08998 * 113.66257 * 144.70664 * 29 12 11 45 45 H 1.09000 * 113.66428 * 13.64366 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0016 10 6 2.0581 -3.6568 -0.0027 11 6 1.2586 -4.8289 -0.6000 12 6 1.8333 -5.6840 0.5298 13 6 2.0031 -4.4008 1.3439 14 6 1.0601 -6.8788 1.0891 15 6 1.9762 -7.7652 0.2260 16 7 2.4116 -8.9903 0.9011 17 6 2.7663 -10.0696 0.1760 18 8 2.7254 -10.0264 -1.0379 19 6 3.2055 -11.3073 0.8579 20 6 3.5700 -12.4194 0.0945 21 6 3.9777 -13.5668 0.7221 22 6 4.0133 -13.5825 2.1206 23 7 4.3539 -14.5175 3.0394 24 6 4.2104 -14.0254 4.2364 25 7 3.7687 -12.7412 4.1659 26 1 3.5841 -12.1555 4.9168 27 6 3.6313 -12.4246 2.8304 28 7 3.2466 -11.3417 2.1834 29 6 3.0118 -6.6276 0.2863 30 1 -0.4850 0.8400 -0.0004 31 1 0.3556 -2.3881 -0.0023 32 1 3.0654 -3.5641 -0.4089 33 1 1.5973 -5.1292 -1.5916 34 1 0.1781 -4.6975 -0.5430 35 1 1.1321 -4.1478 1.9482 36 1 2.9365 -4.3591 1.9053 37 1 0.0137 -6.9039 0.7846 38 1 1.1944 -7.0238 2.1610 39 1 1.5871 -7.9497 -0.7753 40 1 2.4444 -9.0247 1.8700 41 1 3.5314 -12.3743 -0.9838 42 1 4.2686 -14.4362 0.1514 43 1 4.4130 -14.5600 5.1528 44 1 3.6946 -6.7021 1.1326 45 1 3.5245 -6.4522 -0.6594 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000964027516.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:23 Heat of formation + Delta-G solvation = 109.908468 kcal Electronic energy + Delta-G solvation = -27728.421290 eV Core-core repulsion = 23748.567686 eV Total energy + Delta-G solvation = -3979.853605 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.89920 -40.67679 -39.68313 -38.13646 -35.90026 -34.36621 -33.63086 -32.30912 -31.67721 -30.42080 -29.44750 -25.76460 -25.64769 -25.19836 -24.22543 -23.76524 -22.44839 -22.16279 -20.91399 -20.09776 -19.16659 -18.47986 -17.78802 -17.60257 -16.96831 -16.35353 -16.30141 -15.55454 -15.32263 -15.29072 -14.91477 -14.72187 -14.41073 -14.08533 -13.79078 -13.53485 -13.27527 -13.05461 -12.73541 -12.54780 -12.36599 -12.11216 -11.80109 -11.66824 -11.64499 -11.32081 -10.99033 -10.87990 -10.70927 -10.56879 -10.25703 -10.02532 -9.78948 -9.76764 -9.70769 -9.47644 -9.35042 -9.19029 -8.98348 -8.84523 -6.92990 -5.76518 -3.04731 -0.07568 0.70376 1.90478 1.97615 2.59352 2.88226 3.43552 3.43708 3.47789 3.49394 3.51538 3.77504 4.04210 4.45010 4.51822 4.56183 4.58177 4.59911 4.71239 4.80688 4.90689 5.08349 5.21467 5.41938 5.43850 5.51140 5.52775 5.60221 5.74860 5.81359 5.93774 5.96091 5.98813 6.00730 6.10546 6.21390 6.24916 6.39214 6.42126 6.45116 6.51639 6.66554 6.95063 7.04336 7.09566 7.16600 7.39080 7.72101 7.95232 8.42455 9.53484 10.12555 10.46911 11.46077 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.028754 B = 0.001688 C = 0.001640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.538599 B =16586.631677 C =17066.352011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.015 4.015 3 Si 0.906 3.094 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.241 4.241 8 H 0.071 0.929 9 N -0.714 5.714 10 C 0.168 3.832 11 C -0.128 4.128 12 C -0.102 4.102 13 C -0.148 4.148 14 C -0.129 4.129 15 C 0.120 3.880 16 N -0.697 5.697 17 C 0.573 3.427 18 O -0.528 6.528 19 C 0.122 3.878 20 C -0.124 4.124 21 C -0.026 4.026 22 C 0.023 3.977 23 N -0.492 5.492 24 C 0.288 3.712 25 N -0.588 5.588 26 H 0.432 0.568 27 C 0.234 3.766 28 N -0.453 5.453 29 C -0.123 4.123 30 H 0.254 0.746 31 H 0.385 0.615 32 H 0.074 0.926 33 H 0.061 0.939 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.054 0.946 37 H 0.074 0.926 38 H 0.083 0.917 39 H 0.117 0.883 40 H 0.409 0.591 41 H 0.160 0.840 42 H 0.151 0.849 43 H 0.228 0.772 44 H 0.083 0.917 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.186 -31.363 9.029 33.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.210 4.210 3 Si 0.738 3.262 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.372 4.372 8 H 0.089 0.911 9 N -0.352 5.352 10 C 0.056 3.944 11 C -0.167 4.167 12 C -0.103 4.103 13 C -0.190 4.190 14 C -0.168 4.168 15 C 0.016 3.984 16 N -0.346 5.346 17 C 0.357 3.643 18 O -0.403 6.403 19 C -0.027 4.027 20 C -0.147 4.147 21 C -0.053 4.053 22 C -0.099 4.099 23 N -0.211 5.211 24 C 0.000 4.000 25 N -0.202 5.202 26 H 0.272 0.728 27 C -0.004 4.004 28 N -0.169 5.169 29 C -0.162 4.162 30 H 0.064 0.936 31 H 0.219 0.781 32 H 0.092 0.908 33 H 0.080 0.920 34 H 0.100 0.900 35 H 0.097 0.903 36 H 0.073 0.927 37 H 0.093 0.907 38 H 0.102 0.898 39 H 0.135 0.865 40 H 0.245 0.755 41 H 0.177 0.823 42 H 0.168 0.832 43 H 0.244 0.756 44 H 0.102 0.898 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 7.313 -31.235 8.386 33.157 hybrid contribution 0.033 1.196 0.968 1.539 sum 7.346 -30.039 9.353 32.308 Atomic orbital electron populations 1.69669 1.05113 1.25546 1.57806 1.24758 0.95525 0.97745 1.03020 0.86124 0.78809 0.84153 0.77156 1.20551 1.21872 1.21919 1.19367 0.91119 0.84275 1.42457 0.91059 1.42427 1.05741 0.99930 1.87052 1.21542 0.95240 0.84815 0.92789 1.23212 1.00637 0.96656 0.96244 1.22074 0.96262 0.92347 0.99593 1.23637 1.01059 0.94534 0.99725 1.23176 0.99054 0.95126 0.99402 1.22757 0.96480 0.81068 0.98104 1.45939 1.65556 1.12326 1.10806 1.17742 0.77673 0.82337 0.86561 1.90821 1.53674 1.83041 1.12752 1.20988 0.99160 0.95276 0.87238 1.21611 0.98796 0.91675 1.02621 1.20503 0.95826 0.98669 0.90338 1.19909 1.03459 0.91503 0.94992 1.70479 1.22532 1.29968 0.98143 1.25612 0.94395 0.81199 0.98838 1.42902 1.56776 1.14682 1.05879 0.72774 1.18852 1.02932 0.92739 0.85848 1.66172 1.15116 1.26333 1.09318 1.23143 0.96370 0.94201 1.02488 0.93567 0.78124 0.90785 0.92004 0.90011 0.90302 0.92748 0.90729 0.89846 0.86529 0.75514 0.82284 0.83167 0.75582 0.89822 0.90774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.26 13.06 55.49 0.72 -27.53 16 2 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 3 Si 0.91 22.46 29.55 -169.99 -5.02 17.44 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 6 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 7 C -0.24 -6.72 9.97 -15.06 -0.15 -6.87 16 8 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 9 N -0.71 -17.95 5.40 -52.47 -0.28 -18.23 16 10 C 0.17 3.33 4.48 -66.95 -0.30 3.03 16 11 C -0.13 -2.11 7.59 -26.29 -0.20 -2.31 16 12 C -0.10 -1.42 1.11 -154.71 -0.17 -1.59 16 13 C -0.15 -2.52 7.64 -26.28 -0.20 -2.72 16 14 C -0.13 -1.51 7.59 -26.28 -0.20 -1.71 16 15 C 0.12 1.41 4.24 -66.95 -0.28 1.13 16 16 N -0.70 -7.50 5.34 -53.75 -0.29 -7.79 16 17 C 0.57 6.90 7.80 -12.27 -0.10 6.80 16 18 O -0.53 -7.76 15.89 5.33 0.08 -7.67 16 19 C 0.12 1.28 6.74 -82.97 -0.56 0.72 16 20 C -0.12 -1.10 9.55 -39.48 -0.38 -1.48 16 21 C -0.03 -0.21 10.16 -39.41 -0.40 -0.61 16 22 C 0.02 0.21 7.25 -84.57 -0.61 -0.40 16 23 N -0.49 -4.00 11.27 -11.92 -0.13 -4.13 16 24 C 0.29 1.18 12.96 -89.74 -1.16 0.02 16 25 N -0.59 -2.82 6.22 -13.21 -0.08 -2.90 16 26 H 0.43 0.76 8.96 -40.82 -0.37 0.40 16 27 C 0.23 2.06 8.46 -155.75 -1.32 0.74 16 28 N -0.45 -4.45 9.54 -8.83 -0.08 -4.54 16 29 C -0.12 -1.54 7.64 -26.28 -0.20 -1.75 16 30 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 31 H 0.38 10.25 7.92 -40.82 -0.32 9.92 16 32 H 0.07 1.48 8.10 -51.93 -0.42 1.06 16 33 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.08 1.38 8.12 -51.93 -0.42 0.96 16 35 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 36 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 38 H 0.08 0.88 8.12 -51.93 -0.42 0.46 16 39 H 0.12 1.52 7.46 -51.93 -0.39 1.13 16 40 H 0.41 3.81 8.03 -40.82 -0.33 3.49 16 41 H 0.16 1.25 7.61 -52.49 -0.40 0.85 16 42 H 0.15 0.85 8.06 -52.49 -0.42 0.42 16 43 H 0.23 -0.27 8.06 -52.48 -0.42 -0.69 16 44 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 45 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 LS Contribution 381.71 15.07 5.75 5.75 Total: -1.00 -35.31 381.71 -11.66 -46.97 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: -6.00 Total: 10.16 kcal Atomic # 6 Polarization: -1.20 SS G_CDS: -6.33 Total: -7.53 kcal Atomic # 7 Polarization: -64.97 SS G_CDS: -0.15 Total: -65.12 kcal Atomic # 8 Polarization: -7.76 SS G_CDS: 0.08 Total: -7.67 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -35.31 -11.66 -46.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000964027516.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.878 kcal (2) G-P(sol) polarization free energy of solvation -35.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds