Wall clock time and date at job start Sat Apr 11 2020 06:19:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86793 * 119.99896 * 2 1 4 4 H 1.48508 * 109.47120 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47454 * 300.00193 * 3 2 1 6 6 H 1.48497 * 109.47148 * 60.00809 * 3 2 1 7 7 C 1.38807 * 119.99671 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00425 * 179.97438 * 7 2 1 9 9 N 1.36941 * 120.00482 * 359.97438 * 7 2 1 10 10 C 1.46494 * 120.00060 * 180.02562 * 9 7 2 11 11 C 1.53955 * 113.57895 * 204.99943 * 10 9 7 12 12 C 1.52914 * 86.78137 * 220.66567 * 11 10 9 13 13 C 1.52904 * 88.04475 * 24.89810 * 12 11 10 14 14 C 1.52910 * 121.13319 * 150.61590 * 12 11 10 15 15 C 1.53957 * 86.78122 * 100.81974 * 14 12 11 16 16 N 1.46499 * 113.57824 * 139.33249 * 15 14 12 17 17 C 1.34777 * 119.99864 * 155.00205 * 16 15 14 18 18 O 1.21623 * 120.00149 * 359.97438 * 17 16 15 19 19 C 1.47205 * 119.99991 * 180.02562 * 17 16 15 20 20 C 1.37754 * 119.94001 * 179.72586 * 19 17 16 21 21 C 1.39863 * 119.92846 * 179.72622 * 20 19 17 22 22 C 1.36302 * 119.82232 * 0.54145 * 21 20 19 23 23 C 1.40777 * 119.70667 * 359.73217 * 22 21 20 24 24 N 1.32816 * 132.74350 * 180.02562 * 23 22 21 25 25 C 1.32378 * 109.74423 * 179.97438 * 24 23 22 26 26 N 1.31390 * 109.61807 * 359.97438 * 25 24 23 27 27 N 1.36555 * 119.87685 * 359.97438 * 23 22 21 28 28 C 1.52909 * 121.13539 * 259.17710 * 12 11 10 29 29 H 0.96999 * 119.99443 * 359.97438 * 1 2 3 30 30 H 0.97000 * 119.99697 * 359.97438 * 9 7 2 31 31 H 1.08997 * 112.88355 * 336.13806 * 10 9 7 32 32 H 1.09004 * 113.66140 * 106.19421 * 11 10 9 33 33 H 1.09001 * 113.74348 * 335.15174 * 11 10 9 34 34 H 1.09002 * 113.66206 * 89.56808 * 13 12 11 35 35 H 1.08996 * 113.66484 * 220.63248 * 13 12 11 36 36 H 1.09003 * 113.66688 * 346.35112 * 14 12 11 37 37 H 1.08997 * 113.66384 * 215.29351 * 14 12 11 38 38 H 1.09000 * 113.57875 * 270.12813 * 15 14 12 39 39 H 0.97001 * 120.00302 * 335.00467 * 16 15 14 40 40 H 1.07998 * 120.03495 * 359.97438 * 20 19 17 41 41 H 1.08002 * 120.08944 * 180.25732 * 21 20 19 42 42 H 1.07993 * 120.14770 * 179.70616 * 22 21 20 43 43 H 1.07999 * 125.19258 * 179.97438 * 25 24 23 44 44 H 1.08993 * 113.65927 * 144.70919 * 28 12 11 45 45 H 1.08999 * 113.66533 * 13.65097 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8916 2.3963 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2023 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 1.2585 -4.8295 -0.5968 12 6 1.8333 -5.6836 0.5339 13 6 2.0030 -4.3997 1.3468 14 6 1.0598 -6.8777 1.0942 15 6 1.9760 -7.7650 0.2318 16 7 2.4113 -8.9896 0.9080 17 6 2.7660 -10.0695 0.1839 18 8 2.7244 -10.0276 -1.0309 19 6 3.2029 -11.3002 0.8634 20 6 3.5598 -12.4051 0.1222 21 6 3.9803 -13.5723 0.7679 22 6 4.0247 -13.6154 2.1295 23 6 3.6519 -12.4815 2.8758 24 7 3.5975 -12.2389 4.1805 25 6 3.1776 -11.0008 4.3881 26 7 2.9511 -10.4127 3.2353 27 7 3.2490 -11.3462 2.2328 28 6 3.0116 -6.6274 0.2912 29 1 -0.4849 0.8401 0.0004 30 1 0.3556 -2.3881 0.0002 31 1 3.0653 -3.5646 -0.4068 32 1 1.5972 -5.1307 -1.5882 33 1 0.1780 -4.6980 -0.5399 34 1 1.1319 -4.1460 1.9509 35 1 2.9364 -4.3575 1.9080 36 1 0.0135 -6.9032 0.7897 37 1 1.1941 -7.0219 2.1662 38 1 1.5875 -7.9492 -0.7698 39 1 2.4441 -9.0232 1.8769 40 1 3.5188 -12.3687 -0.9564 41 1 4.2647 -14.4388 0.1892 42 1 4.3440 -14.5155 2.6335 43 1 3.0419 -10.5439 5.3572 44 1 3.6944 -6.7011 1.1375 45 1 3.5244 -6.4529 -0.6547 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000964227863.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:26 Heat of formation + Delta-G solvation = 149.899696 kcal Electronic energy + Delta-G solvation = -28359.998979 eV Core-core repulsion = 24381.879524 eV Total energy + Delta-G solvation = -3978.119455 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.26628 -40.67654 -39.58660 -38.00308 -35.94616 -34.51371 -33.48793 -32.08928 -31.53070 -30.52581 -29.51532 -25.83926 -25.77779 -25.21196 -24.16054 -24.03199 -23.44222 -21.98568 -21.04867 -20.03141 -18.70842 -18.14855 -17.71307 -17.17752 -16.97715 -16.86323 -16.36721 -16.29082 -15.37297 -14.97807 -14.81537 -14.76045 -14.55743 -14.06935 -13.57259 -13.45991 -13.26343 -12.88520 -12.72374 -12.56472 -12.45969 -12.20459 -12.14537 -11.79093 -11.66596 -11.36110 -11.00216 -10.90628 -10.83818 -10.69614 -10.50100 -10.22787 -10.17946 -10.02558 -9.79414 -9.71736 -9.38755 -9.19886 -8.87847 -8.84927 -6.93490 -5.76833 -3.05116 -0.36905 0.32663 1.37332 1.87238 2.48114 2.66023 2.91044 3.36076 3.43418 3.49192 3.51370 3.53083 4.11369 4.18791 4.27961 4.54705 4.55469 4.57397 4.68169 4.76814 4.78931 4.86807 5.10661 5.32438 5.40030 5.42302 5.51967 5.53038 5.60076 5.73933 5.76533 5.82101 5.91740 5.93573 5.97214 6.01065 6.05398 6.18724 6.23263 6.37657 6.42800 6.46020 6.65726 6.93848 7.14538 7.20392 7.37464 7.71716 7.78339 8.42145 9.53122 10.11987 10.46376 11.45742 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.025970 B = 0.001921 C = 0.001848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.898498 B =14570.808156 C =15149.137262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.015 4.015 3 Si 0.907 3.093 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.241 4.241 8 H 0.071 0.929 9 N -0.713 5.713 10 C 0.169 3.831 11 C -0.128 4.128 12 C -0.101 4.101 13 C -0.148 4.148 14 C -0.128 4.128 15 C 0.118 3.882 16 N -0.698 5.698 17 C 0.558 3.442 18 O -0.523 6.523 19 C 0.089 3.911 20 C -0.079 4.079 21 C -0.069 4.069 22 C -0.081 4.081 23 C 0.278 3.722 24 N -0.539 5.539 25 C 0.251 3.749 26 N -0.351 5.351 27 N -0.275 5.275 28 C -0.123 4.123 29 H 0.254 0.746 30 H 0.385 0.615 31 H 0.074 0.926 32 H 0.061 0.939 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.054 0.946 36 H 0.075 0.925 37 H 0.084 0.916 38 H 0.117 0.883 39 H 0.416 0.584 40 H 0.176 0.824 41 H 0.162 0.838 42 H 0.164 0.836 43 H 0.231 0.769 44 H 0.083 0.917 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.285 -31.905 4.506 33.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.211 4.211 3 Si 0.738 3.262 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.372 4.372 8 H 0.089 0.911 9 N -0.351 5.351 10 C 0.057 3.943 11 C -0.167 4.167 12 C -0.102 4.102 13 C -0.189 4.189 14 C -0.167 4.167 15 C 0.014 3.986 16 N -0.352 5.352 17 C 0.341 3.659 18 O -0.400 6.400 19 C -0.022 4.022 20 C -0.103 4.103 21 C -0.095 4.095 22 C -0.102 4.102 23 C 0.025 3.975 24 N -0.269 5.269 25 C -0.049 4.049 26 N -0.184 5.184 27 N -0.052 5.052 28 C -0.161 4.161 29 H 0.064 0.936 30 H 0.219 0.781 31 H 0.092 0.908 32 H 0.080 0.920 33 H 0.100 0.900 34 H 0.098 0.902 35 H 0.073 0.927 36 H 0.093 0.907 37 H 0.103 0.897 38 H 0.135 0.865 39 H 0.258 0.742 40 H 0.193 0.807 41 H 0.179 0.821 42 H 0.181 0.819 43 H 0.247 0.753 44 H 0.102 0.898 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 7.163 -31.049 4.003 32.115 hybrid contribution 0.159 0.792 0.579 0.994 sum 7.322 -30.257 4.582 31.465 Atomic orbital electron populations 1.69676 1.05110 1.25548 1.57790 1.24766 0.95542 0.97770 1.03019 0.86118 0.78801 0.84124 0.77160 1.20548 1.21881 1.21891 1.19360 0.91107 0.84256 1.42466 0.91069 1.42425 1.05746 0.99922 1.87040 1.21537 0.95219 0.84812 0.92763 1.23220 1.00676 0.96669 0.96166 1.22068 0.96128 0.92365 0.99670 1.23643 1.01140 0.94402 0.99754 1.23174 0.98985 0.94993 0.99513 1.22800 0.96755 0.80970 0.98069 1.46444 1.64632 1.12223 1.11949 1.17552 0.78725 0.82531 0.87053 1.90868 1.53952 1.82986 1.12153 1.20699 1.04666 0.98183 0.78680 1.21567 0.96624 0.89914 1.02177 1.21318 0.95943 0.98438 0.93808 1.20579 1.00284 0.96185 0.93170 1.21872 0.97495 0.89217 0.88942 1.70876 1.27296 1.17258 1.11485 1.26221 0.92464 0.88563 0.97675 1.77989 1.31947 1.12700 0.95762 1.47903 1.40450 1.11257 1.05631 1.23130 0.96384 0.94114 1.02483 0.93563 0.78116 0.90780 0.92022 0.89964 0.90229 0.92698 0.90673 0.89737 0.86527 0.74224 0.80663 0.82068 0.81867 0.75252 0.89843 0.90724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.35 13.06 55.49 0.72 -27.62 16 2 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16 3 Si 0.91 22.55 29.55 -169.99 -5.02 17.52 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 6 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 7 C -0.24 -6.74 9.97 -15.06 -0.15 -6.89 16 8 H 0.07 1.94 7.83 -52.48 -0.41 1.53 16 9 N -0.71 -18.04 5.40 -52.47 -0.28 -18.32 16 10 C 0.17 3.37 4.48 -66.95 -0.30 3.07 16 11 C -0.13 -2.13 7.59 -26.28 -0.20 -2.33 16 12 C -0.10 -1.46 1.11 -154.71 -0.17 -1.63 16 13 C -0.15 -2.57 7.64 -26.28 -0.20 -2.77 16 14 C -0.13 -1.60 7.59 -26.28 -0.20 -1.80 16 15 C 0.12 1.47 4.24 -66.94 -0.28 1.19 16 16 N -0.70 -8.30 5.35 -53.99 -0.29 -8.59 16 17 C 0.56 6.72 7.78 -12.62 -0.10 6.62 16 18 O -0.52 -7.40 15.89 5.26 0.08 -7.32 16 19 C 0.09 0.85 6.80 -82.05 -0.56 0.29 16 20 C -0.08 -0.49 9.58 -39.15 -0.38 -0.86 16 21 C -0.07 -0.24 10.04 -39.67 -0.40 -0.64 16 22 C -0.08 -0.41 10.09 -39.32 -0.40 -0.81 16 23 C 0.28 2.49 7.88 -156.37 -1.23 1.26 16 24 N -0.54 -5.27 11.24 -13.99 -0.16 -5.43 16 25 C 0.25 2.15 12.98 -92.00 -1.19 0.96 16 26 N -0.35 -3.61 9.98 29.25 0.29 -3.32 16 27 N -0.28 -2.76 3.93 -8.81 -0.03 -2.79 16 28 C -0.12 -1.61 7.64 -26.28 -0.20 -1.81 16 29 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 30 H 0.38 10.30 7.92 -40.82 -0.32 9.97 16 31 H 0.07 1.50 8.10 -51.93 -0.42 1.08 16 32 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.08 1.40 8.12 -51.93 -0.42 0.98 16 34 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 35 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 37 H 0.08 1.00 8.12 -51.93 -0.42 0.58 16 38 H 0.12 1.56 7.47 -51.93 -0.39 1.17 16 39 H 0.42 4.75 5.67 -40.82 -0.23 4.52 16 40 H 0.18 0.86 7.59 -52.49 -0.40 0.46 16 41 H 0.16 -0.05 8.06 -52.49 -0.42 -0.47 16 42 H 0.16 0.40 8.06 -52.49 -0.42 -0.02 16 43 H 0.23 1.02 8.06 -52.49 -0.42 0.59 16 44 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 45 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 378.77 15.07 5.71 5.71 Total: -1.00 -34.66 378.77 -10.99 -45.65 By element: Atomic # 1 Polarization: 17.16 SS G_CDS: -5.96 Total: 11.20 kcal Atomic # 6 Polarization: -0.64 SS G_CDS: -6.05 Total: -6.69 kcal Atomic # 7 Polarization: -66.33 SS G_CDS: 0.25 Total: -66.08 kcal Atomic # 8 Polarization: -7.40 SS G_CDS: 0.08 Total: -7.32 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.66 -10.99 -45.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000964227863.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 195.547 kcal (2) G-P(sol) polarization free energy of solvation -34.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 160.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.647 kcal (6) G-S(sol) free energy of system = (1) + (5) 149.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds