Wall clock time and date at job start Sat Apr 11 2020 06:19:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86806 * 119.99644 * 2 1 4 4 H 1.48497 * 109.47009 * 88.09757 * 3 2 1 5 5 H 1.48494 * 109.47165 * 328.09772 * 3 2 1 6 6 H 1.48500 * 109.47030 * 208.09812 * 3 2 1 7 7 C 1.38813 * 120.00454 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99531 * 24.86157 * 7 2 1 9 9 N 1.36932 * 120.00233 * 204.85592 * 7 2 1 10 10 C 1.43464 * 118.93863 * 204.21209 * 9 7 2 11 11 C 1.53238 * 108.26211 * 273.78085 * 10 9 7 12 12 C 1.47140 * 111.81570 * 281.67760 * 11 10 9 13 13 N 1.48215 * 110.34018 * 58.22838 * 12 11 10 14 14 C 1.34776 * 119.96974 * 102.46815 * 13 12 11 15 15 O 1.21608 * 120.00356 * 4.92282 * 14 13 12 16 16 C 1.47409 * 120.00088 * 184.93413 * 14 13 12 17 17 C 1.41331 * 126.41184 * 7.98393 * 16 14 13 18 18 N 1.30475 * 108.06890 * 179.97438 * 17 16 14 19 19 N 1.39927 * 108.91581 * 0.02562 * 18 17 16 20 20 C 1.40182 * 125.77330 * 180.02562 * 19 18 17 21 21 C 1.39266 * 120.48092 * 359.96891 * 20 19 18 22 22 C 1.38502 * 118.35962 * 179.97438 * 21 20 19 23 23 C 1.38267 * 119.23480 * 0.02562 * 22 21 20 24 24 N 1.31869 * 120.91118 * 359.97438 * 23 22 21 25 25 C 1.31817 * 121.78796 * 359.72668 * 24 23 22 26 26 C 1.34535 * 108.46032 * 359.76242 * 19 18 17 27 27 C 1.43620 * 120.06020 * 282.48764 * 13 12 11 28 28 C 1.48859 * 118.93797 * 24.48553 * 9 7 2 29 29 H 0.97004 * 119.99740 * 185.09932 * 1 2 3 30 30 H 1.08990 * 109.76213 * 33.25219 * 10 9 7 31 31 H 1.09001 * 109.76141 * 154.01825 * 10 9 7 32 32 H 1.09004 * 109.07488 * 161.04578 * 11 10 9 33 33 H 1.09001 * 108.90476 * 42.20344 * 11 10 9 34 34 H 1.09007 * 109.32587 * 297.96740 * 12 11 10 35 35 H 1.08995 * 109.18522 * 178.40593 * 12 11 10 36 36 H 1.07999 * 125.96624 * 359.94525 * 17 16 14 37 37 H 1.07999 * 120.81977 * 359.96278 * 21 20 19 38 38 H 1.08003 * 120.38470 * 180.02562 * 22 21 20 39 39 H 1.08005 * 119.54844 * 179.97438 * 23 22 21 40 40 H 1.08001 * 119.66007 * 180.26994 * 25 24 23 41 41 H 1.08000 * 126.31200 * 180.26291 * 26 19 18 42 42 H 1.09004 * 108.86918 * 329.88609 * 27 13 12 43 43 H 1.09004 * 108.79375 * 211.40032 * 27 13 12 44 44 H 1.09003 * 109.47746 * 260.59825 * 28 9 7 45 45 H 1.08998 * 109.47909 * 20.62714 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4573 2.0697 1.3993 5 1 1.4682 2.6407 -0.7399 6 1 3.5672 1.4291 -0.6594 7 6 2.0103 -1.2021 0.0005 8 1 1.5454 -2.0943 -0.3923 9 7 3.2845 -1.2568 0.4990 10 6 4.1639 -2.2951 0.0443 11 6 3.9306 -3.5363 0.9122 12 6 4.5941 -3.4212 2.2205 13 7 4.1057 -2.2224 2.9422 14 6 3.2077 -2.3556 3.9384 15 8 2.8659 -3.4636 4.3049 16 6 2.6396 -1.1581 4.5836 17 6 2.8148 0.1814 4.1684 18 7 2.1570 0.9499 4.9926 19 7 1.5385 0.1517 5.9613 20 6 0.7421 0.6146 7.0179 21 6 0.5038 1.9773 7.1785 22 6 -0.2899 2.3861 8.2374 23 6 -0.8152 1.4361 9.0937 24 7 -0.5704 0.1528 8.9140 25 6 0.1748 -0.2788 7.9159 26 6 1.8327 -1.1356 5.7038 27 6 4.5881 -0.9188 2.5807 28 6 3.7106 -0.2406 1.4999 29 1 -0.4850 -0.8368 0.0747 30 1 3.9459 -2.5330 -0.9967 31 1 5.1996 -1.9688 0.1394 32 1 4.3193 -4.4123 0.3929 33 1 2.8591 -3.6623 1.0674 34 1 5.6710 -3.3395 2.0728 35 1 4.3775 -4.3111 2.8114 36 1 3.3926 0.5114 3.3178 37 1 0.9277 2.6976 6.4944 38 1 -0.4963 3.4348 8.3924 39 1 -1.4345 1.7492 9.9213 40 1 0.3494 -1.3381 7.7986 41 1 1.5002 -1.9932 6.2698 42 1 5.6057 -1.0122 2.2013 43 1 4.6005 -0.2897 3.4708 44 1 4.2856 0.5406 1.0025 45 1 2.8304 0.1987 1.9692 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981322589.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:31 Heat of formation + Delta-G solvation = 130.936081 kcal Electronic energy + Delta-G solvation = -30450.126349 eV Core-core repulsion = 26471.184570 eV Total energy + Delta-G solvation = -3978.941779 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.08554 -41.36297 -40.63672 -38.75422 -36.12888 -35.62062 -34.32982 -33.49452 -33.36597 -31.62465 -30.53836 -29.55033 -27.56736 -25.85803 -25.18970 -24.91002 -23.95943 -22.67330 -22.17906 -21.49598 -20.49445 -19.58406 -19.05098 -18.10025 -17.75495 -17.55198 -17.06147 -16.92754 -16.81543 -16.62212 -15.92089 -15.57293 -15.50608 -15.16513 -14.90518 -14.77063 -14.57507 -14.46875 -14.25593 -14.09684 -13.74926 -13.57723 -13.33756 -13.22371 -12.72786 -12.52141 -12.33093 -12.09718 -11.89417 -11.88821 -11.62670 -11.53211 -11.31901 -10.97407 -10.85928 -10.74838 -10.58899 -10.42045 -9.66622 -9.39047 -8.94296 -8.56861 -5.45597 -0.59299 0.02433 0.63927 0.95100 1.04059 1.40227 1.55829 1.72188 2.02139 2.32469 2.58381 2.65421 3.03201 3.12310 3.25929 3.41154 3.50057 3.62259 3.70258 3.76463 3.89114 4.01829 4.07049 4.13568 4.17386 4.25449 4.32760 4.38203 4.47477 4.52827 4.58621 4.66400 4.75361 4.84959 4.87171 4.93487 4.97148 5.02975 5.11574 5.22698 5.35970 5.44683 5.70193 5.76913 5.81724 6.21208 6.26097 6.44592 6.72797 6.93423 7.16112 7.72319 8.04496 8.85389 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012544 B = 0.004067 C = 0.003406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2231.585384 B = 6883.793934 C = 8219.065643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.067 4.067 3 Si 1.086 2.914 4 H -0.266 1.266 5 H -0.315 1.315 6 H -0.252 1.252 7 C -0.328 4.328 8 H 0.019 0.981 9 N -0.605 5.605 10 C 0.156 3.844 11 C -0.157 4.157 12 C 0.129 3.871 13 N -0.581 5.581 14 C 0.593 3.407 15 O -0.590 6.590 16 C -0.292 4.292 17 C 0.067 3.933 18 N -0.309 5.309 19 N -0.309 5.309 20 C 0.078 3.922 21 C -0.083 4.083 22 C -0.134 4.134 23 C 0.091 3.909 24 N -0.477 5.477 25 C 0.083 3.917 26 C 0.126 3.874 27 C 0.076 3.924 28 C 0.077 3.923 29 H 0.242 0.758 30 H 0.037 0.963 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.013 0.987 34 H 0.112 0.888 35 H 0.073 0.927 36 H 0.229 0.771 37 H 0.147 0.853 38 H 0.183 0.817 39 H 0.201 0.799 40 H 0.173 0.827 41 H 0.215 0.785 42 H 0.119 0.881 43 H 0.104 0.896 44 H 0.065 0.935 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.914 4.033 16.580 19.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.261 4.261 3 Si 0.911 3.089 4 H -0.191 1.191 5 H -0.244 1.244 6 H -0.176 1.176 7 C -0.458 4.458 8 H 0.037 0.963 9 N -0.329 5.329 10 C 0.029 3.971 11 C -0.198 4.198 12 C 0.008 3.992 13 N -0.310 5.310 14 C 0.383 3.617 15 O -0.473 6.473 16 C -0.306 4.306 17 C -0.120 4.120 18 N -0.126 5.126 19 N -0.082 5.082 20 C -0.016 4.016 21 C -0.111 4.111 22 C -0.153 4.153 23 C -0.066 4.066 24 N -0.185 5.185 25 C -0.076 4.076 26 C -0.022 4.022 27 C -0.049 4.049 28 C -0.048 4.048 29 H 0.051 0.949 30 H 0.056 0.944 31 H 0.099 0.901 32 H 0.107 0.893 33 H 0.032 0.968 34 H 0.130 0.870 35 H 0.091 0.909 36 H 0.244 0.756 37 H 0.165 0.835 38 H 0.200 0.800 39 H 0.217 0.783 40 H 0.190 0.810 41 H 0.231 0.769 42 H 0.137 0.863 43 H 0.122 0.878 44 H 0.082 0.918 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 8.923 5.677 17.605 20.537 hybrid contribution -0.350 -2.314 -1.492 2.775 sum 8.573 3.363 16.113 18.559 Atomic orbital electron populations 1.70987 1.08062 1.28161 1.52649 1.27322 0.96107 1.04508 0.98132 0.83646 0.75054 0.72430 0.77767 1.19145 1.24433 1.17590 1.19989 0.91747 0.94353 1.39684 0.96267 1.43898 1.10801 1.32745 1.45437 1.20447 0.94110 0.87191 0.95316 1.21612 0.99266 1.01105 0.97800 1.20752 0.99548 0.87142 0.91750 1.47210 1.42360 1.08508 1.32949 1.17374 0.77918 0.86979 0.79385 1.90673 1.62374 1.27747 1.66497 1.20388 1.12789 0.94365 1.03078 1.25819 0.96894 0.90941 0.98357 1.77220 1.14483 1.19089 1.01849 1.45697 1.36877 1.04613 1.21000 1.19044 0.96979 0.96258 0.89278 1.21662 0.97362 0.93195 0.98869 1.22523 0.95781 1.03842 0.93203 1.23583 0.96635 0.87191 0.99195 1.67851 1.12964 1.19331 1.18374 1.22780 0.94355 1.00382 0.90075 1.23320 0.94202 0.88361 0.96270 1.22422 0.99402 0.84276 0.98825 1.23103 0.98238 0.92658 0.90778 0.94927 0.94429 0.90072 0.89257 0.96805 0.86973 0.90884 0.75604 0.83493 0.79960 0.78268 0.80993 0.76887 0.86265 0.87790 0.91775 0.92662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -62.34 13.70 21.65 0.30 -62.04 16 2 C -0.07 -3.91 5.10 84.86 0.43 -3.48 16 3 Si 1.09 50.74 24.45 68.60 1.68 52.42 16 4 H -0.27 -11.10 6.66 99.48 0.66 -10.44 16 5 H -0.32 -15.57 7.11 99.48 0.71 -14.86 16 6 H -0.25 -10.29 6.72 99.48 0.67 -9.62 16 7 C -0.33 -18.58 9.52 84.03 0.80 -17.78 16 8 H 0.02 1.25 8.06 -2.91 -0.02 1.22 16 9 N -0.61 -26.73 2.34 -699.20 -1.63 -28.36 16 10 C 0.16 5.55 5.59 87.02 0.49 6.03 16 11 C -0.16 -5.28 5.63 28.85 0.16 -5.12 16 12 C 0.13 3.73 5.72 84.23 0.48 4.21 16 13 N -0.58 -19.06 2.46 -835.12 -2.05 -21.12 16 14 C 0.59 22.68 7.66 86.66 0.66 23.34 16 15 O -0.59 -25.50 16.33 -4.06 -0.07 -25.56 16 16 C -0.29 -10.41 5.91 -20.14 -0.12 -10.53 16 17 C 0.07 2.31 8.68 85.66 0.74 3.05 16 18 N -0.31 -10.66 11.85 -56.23 -0.67 -11.33 16 19 N -0.31 -9.55 3.77 -185.89 -0.70 -10.25 16 20 C 0.08 2.01 6.70 38.19 0.26 2.27 16 21 C -0.08 -1.82 9.77 22.58 0.22 -1.59 16 22 C -0.13 -1.92 10.10 22.34 0.23 -1.70 16 23 C 0.09 1.35 11.18 84.69 0.95 2.30 16 24 N -0.48 -10.00 10.35 -195.35 -2.02 -12.02 16 25 C 0.08 1.88 10.61 84.83 0.90 2.78 16 26 C 0.13 3.93 10.63 84.24 0.90 4.83 16 27 C 0.08 2.10 4.69 87.55 0.41 2.51 16 28 C 0.08 2.85 3.61 86.56 0.31 3.16 16 29 H 0.24 16.27 8.73 -92.71 -0.81 15.46 16 30 H 0.04 1.43 8.02 -2.39 -0.02 1.41 16 31 H 0.08 2.21 7.58 -2.39 -0.02 2.20 16 32 H 0.09 2.44 8.14 -2.38 -0.02 2.42 16 33 H 0.01 0.59 7.90 -2.39 -0.02 0.57 16 34 H 0.11 2.25 8.06 -2.38 -0.02 2.23 16 35 H 0.07 2.28 7.08 -2.39 -0.02 2.26 16 36 H 0.23 7.34 2.94 -2.91 -0.01 7.33 16 37 H 0.15 3.29 7.77 -2.91 -0.02 3.27 16 38 H 0.18 1.23 8.06 -2.91 -0.02 1.21 16 39 H 0.20 1.39 8.06 -2.91 -0.02 1.37 16 40 H 0.17 3.30 6.74 -2.91 -0.02 3.28 16 41 H 0.21 5.31 7.03 -2.91 -0.02 5.29 16 42 H 0.12 2.33 7.73 -2.38 -0.02 2.32 16 43 H 0.10 2.54 4.73 -2.38 -0.01 2.53 16 44 H 0.06 2.11 6.02 -2.39 -0.01 2.10 16 45 H 0.06 2.38 2.96 -2.39 -0.01 2.37 16 Total: -1.00 -83.62 352.47 3.58 -80.04 By element: Atomic # 1 Polarization: 23.00 SS G_CDS: 0.92 Total: 23.92 kcal Atomic # 6 Polarization: 6.48 SS G_CDS: 7.82 Total: 14.30 kcal Atomic # 7 Polarization: -138.34 SS G_CDS: -6.78 Total: -145.12 kcal Atomic # 8 Polarization: -25.50 SS G_CDS: -0.07 Total: -25.56 kcal Atomic # 14 Polarization: 50.74 SS G_CDS: 1.68 Total: 52.42 kcal Total: -83.62 3.58 -80.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981322589.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 210.979 kcal (2) G-P(sol) polarization free energy of solvation -83.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.042 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds