Wall clock time and date at job start Sat Apr 11 2020 06:19:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 120.00263 * 2 1 4 4 H 1.48502 * 109.47008 * 239.99923 * 3 2 1 5 5 H 1.48493 * 109.46935 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.46927 * 120.00158 * 3 2 1 7 7 C 1.38814 * 119.99597 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99867 * 175.76677 * 7 2 1 9 9 N 1.36933 * 120.00339 * 355.77153 * 7 2 1 10 10 C 1.43472 * 118.94059 * 214.50529 * 9 7 2 11 11 C 1.53507 * 107.88958 * 273.55644 * 10 9 7 12 12 C 1.47141 * 112.03177 * 281.58860 * 11 10 9 13 13 N 1.48211 * 110.20127 * 58.36041 * 12 11 10 14 14 C 1.34778 * 119.97069 * 102.58793 * 13 12 11 15 15 O 1.21590 * 120.00015 * 356.40758 * 14 13 12 16 16 C 1.47506 * 119.99959 * 176.41277 * 14 13 12 17 17 C 1.36624 * 125.76449 * 186.60396 * 16 14 13 18 18 N 1.35087 * 106.79159 * 179.97438 * 17 16 14 19 19 C 1.40224 * 126.61096 * 179.97438 * 18 17 16 20 20 C 1.38834 * 120.06586 * 359.72520 * 19 18 17 21 21 C 1.38120 * 119.92930 * 179.74764 * 20 19 18 22 22 C 1.38274 * 120.07170 * 0.52832 * 21 20 19 23 23 C 1.38287 * 120.12698 * 359.74647 * 22 21 20 24 24 C 1.38120 * 120.06492 * 359.97438 * 23 22 21 25 25 N 1.40209 * 106.77355 * 0.02562 * 18 17 16 26 26 N 1.28750 * 108.38581 * 359.72075 * 25 18 17 27 27 C 1.43623 * 120.06358 * 282.56182 * 13 12 11 28 28 C 1.48854 * 118.94177 * 34.48013 * 9 7 2 29 29 H 0.96997 * 119.99776 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.76432 * 33.21878 * 10 9 7 31 31 H 1.08997 * 109.75989 * 153.94172 * 10 9 7 32 32 H 1.09000 * 108.79097 * 161.00382 * 11 10 9 33 33 H 1.09001 * 109.03336 * 42.33228 * 11 10 9 34 34 H 1.08999 * 109.32686 * 298.17867 * 12 11 10 35 35 H 1.09003 * 109.32905 * 178.54065 * 12 11 10 36 36 H 1.07993 * 126.60655 * 0.02562 * 17 16 14 37 37 H 1.08003 * 120.02888 * 0.02562 * 20 19 18 38 38 H 1.08005 * 119.96363 * 180.29991 * 21 20 19 39 39 H 1.07997 * 119.94059 * 179.76905 * 22 21 20 40 40 H 1.07998 * 119.96011 * 180.02562 * 23 22 21 41 41 H 1.08002 * 120.03225 * 180.02562 * 24 23 22 42 42 H 1.08997 * 108.87866 * 211.46833 * 27 13 12 43 43 H 1.09006 * 108.86983 * 329.90427 * 27 13 12 44 44 H 1.09007 * 109.48035 * 20.66256 * 28 9 7 45 45 H 1.09003 * 109.49106 * 260.63679 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0880 -1.2036 -0.0685 9 7 1.3283 -2.3864 0.0885 10 6 1.9228 -3.4784 0.8045 11 6 2.8281 -4.2442 -0.1703 12 6 2.0583 -5.1273 -1.0607 13 7 1.0706 -4.3387 -1.8347 14 6 1.3140 -4.0351 -3.1251 15 8 2.3715 -4.3515 -3.6351 16 6 0.2975 -3.3191 -3.9187 17 6 0.3643 -3.0651 -5.2595 18 7 -0.7608 -2.3925 -5.5859 19 6 -1.1166 -1.9263 -6.8596 20 6 -0.2703 -2.1385 -7.9395 21 6 -0.6260 -1.6827 -9.1938 22 6 -1.8185 -1.0060 -9.3726 23 6 -2.6609 -0.7881 -8.2978 24 6 -2.3132 -1.2466 -7.0422 25 7 -1.5036 -2.2495 -4.4053 26 7 -0.8537 -2.8110 -3.4461 27 6 -0.1459 -3.8981 -1.2112 28 6 -0.0062 -2.4992 -0.5613 29 1 -0.4850 0.8400 0.0004 30 1 2.5147 -3.0953 1.6357 31 1 1.1429 -4.1400 1.1814 32 1 3.5328 -4.8458 0.4038 33 1 3.3851 -3.5286 -0.7751 34 1 1.5353 -5.8743 -0.4636 35 1 2.7392 -5.6280 -1.7490 36 1 1.1625 -3.3484 -5.9295 37 1 0.6632 -2.6635 -7.7996 38 1 0.0298 -1.8517 -10.0352 39 1 -2.0928 -0.6472 -10.3537 40 1 -3.5918 -0.2596 -8.4406 41 1 -2.9717 -1.0766 -6.2032 42 1 -0.9340 -3.8604 -1.9632 43 1 -0.4286 -4.6174 -0.4426 44 1 -0.1031 -1.7308 -1.3283 45 1 -0.7875 -2.3664 0.1871 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981532721.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:45 Heat of formation + Delta-G solvation = 147.042255 kcal Electronic energy + Delta-G solvation = -30124.360636 eV Core-core repulsion = 26146.117273 eV Total energy + Delta-G solvation = -3978.243363 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.32196 -39.69998 -39.16299 -36.83850 -34.78592 -34.07213 -32.61400 -31.63440 -30.85761 -30.63855 -29.72810 -27.44483 -25.61109 -24.46557 -23.96682 -23.49840 -22.62371 -21.56361 -21.07011 -19.62719 -19.39129 -18.02653 -16.93313 -16.43247 -16.15952 -15.98354 -15.87002 -15.30664 -15.16438 -14.78760 -14.37029 -14.15978 -14.01488 -13.84971 -13.60957 -13.28675 -13.03415 -12.91856 -12.40659 -12.30056 -12.15510 -11.99126 -11.86011 -11.38944 -11.37081 -11.22235 -10.84397 -10.79858 -10.53590 -10.44373 -10.09920 -10.04357 -9.73836 -9.57593 -9.43853 -9.43049 -9.40190 -8.65173 -8.34166 -7.92226 -6.42161 -5.68666 -3.19589 0.32970 0.92083 1.67085 1.97394 2.00280 3.37747 3.42666 3.44271 3.47252 3.48965 3.71389 4.21166 4.30852 4.48481 4.57021 4.67643 4.72776 4.88921 4.94800 5.07399 5.18829 5.30490 5.43309 5.52740 5.59556 5.64930 5.77179 5.81779 5.91368 5.93030 6.03354 6.04014 6.09947 6.26716 6.32042 6.40889 6.57406 6.64636 6.68413 6.77512 6.93885 7.04036 7.18865 7.62088 7.80540 7.90767 8.04141 8.13428 8.62024 8.64874 9.36410 10.00467 10.50496 11.37763 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011378 B = 0.003779 C = 0.003179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2460.276083 B = 7406.957401 C = 8805.377935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.014 3.986 3 Si 0.896 3.104 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.258 4.258 8 H 0.058 0.942 9 N -0.594 5.594 10 C 0.163 3.837 11 C -0.170 4.170 12 C 0.131 3.869 13 N -0.564 5.564 14 C 0.604 3.396 15 O -0.557 6.557 16 C -0.075 4.075 17 C 0.083 3.917 18 N -0.319 5.319 19 C 0.143 3.857 20 C -0.129 4.129 21 C -0.097 4.097 22 C -0.121 4.121 23 C -0.098 4.098 24 C -0.106 4.106 25 N -0.060 5.060 26 N -0.171 5.171 27 C 0.063 3.937 28 C 0.173 3.827 29 H 0.253 0.747 30 H 0.045 0.955 31 H 0.032 0.968 32 H 0.055 0.945 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.077 0.923 36 H 0.203 0.797 37 H 0.135 0.865 38 H 0.135 0.865 39 H 0.130 0.870 40 H 0.135 0.865 41 H 0.143 0.857 42 H 0.099 0.901 43 H 0.053 0.947 44 H 0.087 0.913 45 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.533 -7.295 -16.746 18.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.185 4.185 3 Si 0.726 3.274 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.388 4.388 8 H 0.076 0.924 9 N -0.316 5.316 10 C 0.034 3.966 11 C -0.212 4.212 12 C 0.010 3.990 13 N -0.293 5.293 14 C 0.390 3.610 15 O -0.436 6.436 16 C -0.212 4.212 17 C -0.070 4.070 18 N -0.097 5.097 19 C 0.051 3.949 20 C -0.150 4.150 21 C -0.115 4.115 22 C -0.140 4.140 23 C -0.117 4.117 24 C -0.126 4.126 25 N -0.038 5.038 26 N -0.045 5.045 27 C -0.063 4.063 28 C 0.047 3.953 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.051 0.949 32 H 0.073 0.927 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.096 0.904 36 H 0.220 0.780 37 H 0.152 0.848 38 H 0.153 0.847 39 H 0.148 0.852 40 H 0.153 0.847 41 H 0.161 0.839 42 H 0.116 0.884 43 H 0.071 0.929 44 H 0.105 0.895 45 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -5.405 -6.807 -16.282 18.457 hybrid contribution 1.385 0.801 -0.388 1.646 sum -4.020 -6.006 -16.670 18.169 Atomic orbital electron populations 1.69954 1.05113 1.25324 1.54131 1.25261 0.95446 0.97973 0.99822 0.86476 0.79026 0.83842 0.78044 1.21201 1.21647 1.20850 1.19035 0.90633 0.83610 1.45507 0.92387 1.43670 1.18859 1.09959 1.59076 1.20246 0.94119 0.89841 0.92401 1.21840 0.99884 0.99653 0.99785 1.20620 0.91273 0.93031 0.94116 1.47209 1.21092 1.51774 1.09212 1.16666 0.84500 0.78186 0.81658 1.90725 1.24977 1.56048 1.71828 1.21521 0.97311 1.10142 0.92260 1.23235 0.91236 0.95276 0.97218 1.47667 1.15424 1.38215 1.08425 1.17655 0.96514 0.99947 0.80734 1.20988 0.99756 1.02420 0.91786 1.21014 0.96955 0.97363 0.96202 1.21319 0.94476 0.98772 0.99390 1.21120 1.00041 0.98887 0.91625 1.21032 0.95147 0.97408 0.99018 1.82131 1.16443 1.20545 0.84661 1.74863 1.03801 1.05121 1.20683 1.22749 0.85703 0.99609 0.98219 1.21917 0.86166 0.91314 0.95871 0.93644 0.93697 0.94924 0.92671 0.91373 0.91818 0.90441 0.78014 0.84756 0.84720 0.85196 0.84699 0.83910 0.88398 0.92880 0.89467 0.94564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.56 10.61 55.49 0.59 -25.97 16 2 C 0.01 0.40 5.30 -17.43 -0.09 0.31 16 3 Si 0.90 22.59 29.56 -169.99 -5.02 17.57 16 4 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 5 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 6 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 7 C -0.26 -7.29 9.18 -15.06 -0.14 -7.43 16 8 H 0.06 1.66 7.83 -52.48 -0.41 1.24 16 9 N -0.59 -15.08 2.53 -172.17 -0.44 -15.52 16 10 C 0.16 3.45 5.63 -5.38 -0.03 3.42 16 11 C -0.17 -3.20 5.61 -29.28 -0.16 -3.37 16 12 C 0.13 2.28 5.69 -5.91 -0.03 2.24 16 13 N -0.56 -11.05 2.45 -177.90 -0.44 -11.49 16 14 C 0.60 12.24 7.66 -12.48 -0.10 12.14 16 15 O -0.56 -11.91 16.33 5.29 0.09 -11.82 16 16 C -0.08 -1.41 6.68 -83.54 -0.56 -1.97 16 17 C 0.08 1.26 10.61 -16.70 -0.18 1.08 16 18 N -0.32 -4.77 3.82 -10.42 -0.04 -4.81 16 19 C 0.14 1.72 6.70 -83.58 -0.56 1.16 16 20 C -0.13 -1.19 9.47 -39.40 -0.37 -1.56 16 21 C -0.10 -0.70 10.04 -39.61 -0.40 -1.10 16 22 C -0.12 -0.83 10.04 -39.55 -0.40 -1.23 16 23 C -0.10 -0.78 10.04 -39.61 -0.40 -1.18 16 24 C -0.11 -1.14 9.68 -39.41 -0.38 -1.52 16 25 N -0.06 -1.07 13.12 60.35 0.79 -0.28 16 26 N -0.17 -3.34 7.82 32.85 0.26 -3.08 16 27 C 0.06 1.25 4.82 -4.58 -0.02 1.23 16 28 C 0.17 4.22 4.99 -1.75 -0.01 4.21 16 29 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 30 H 0.04 0.97 8.02 -51.93 -0.42 0.55 16 31 H 0.03 0.64 7.59 -51.93 -0.39 0.24 16 32 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.07 1.51 7.90 -51.93 -0.41 1.10 16 34 H 0.06 0.94 8.05 -51.93 -0.42 0.53 16 35 H 0.08 1.32 7.16 -51.93 -0.37 0.95 16 36 H 0.20 2.32 7.13 -52.49 -0.37 1.95 16 37 H 0.13 1.02 6.81 -52.48 -0.36 0.67 16 38 H 0.13 0.62 8.06 -52.48 -0.42 0.20 16 39 H 0.13 0.56 8.06 -52.49 -0.42 0.13 16 40 H 0.14 0.75 8.06 -52.49 -0.42 0.33 16 41 H 0.14 1.60 7.73 -52.49 -0.41 1.19 16 42 H 0.10 1.91 4.83 -51.96 -0.25 1.65 16 43 H 0.05 0.95 7.73 -51.93 -0.40 0.55 16 44 H 0.09 2.41 5.81 -51.92 -0.30 2.11 16 45 H 0.04 0.95 7.95 -51.93 -0.41 0.54 16 LS Contribution 364.89 15.07 5.50 5.50 Total: -1.00 -34.17 364.89 -8.29 -42.46 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -5.75 Total: 1.01 kcal Atomic # 6 Polarization: 10.26 SS G_CDS: -3.83 Total: 6.43 kcal Atomic # 7 Polarization: -61.88 SS G_CDS: 0.73 Total: -61.15 kcal Atomic # 8 Polarization: -11.91 SS G_CDS: 0.09 Total: -11.82 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.57 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.17 -8.29 -42.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981532721.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 189.503 kcal (2) G-P(sol) polarization free energy of solvation -34.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 155.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.461 kcal (6) G-S(sol) free energy of system = (1) + (5) 147.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds