Wall clock time and date at job start Sat Apr 11 2020 06:19:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 120.00263 * 2 1 4 4 H 1.48502 * 109.47008 * 239.99923 * 3 2 1 5 5 H 1.48493 * 109.46935 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.46927 * 120.00158 * 3 2 1 7 7 C 1.38814 * 119.99597 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99867 * 175.76677 * 7 2 1 9 9 N 1.36933 * 120.00339 * 355.77153 * 7 2 1 10 10 C 1.43472 * 118.94059 * 214.50529 * 9 7 2 11 11 C 1.53507 * 107.88958 * 273.55644 * 10 9 7 12 12 C 1.47141 * 112.03177 * 281.58860 * 11 10 9 13 13 N 1.48211 * 110.20127 * 58.36041 * 12 11 10 14 14 C 1.34778 * 119.97069 * 102.58793 * 13 12 11 15 15 O 1.21590 * 120.00015 * 356.40758 * 14 13 12 16 16 C 1.47506 * 119.99959 * 176.41277 * 14 13 12 17 17 C 1.36624 * 125.76449 * 186.60396 * 16 14 13 18 18 N 1.35087 * 106.79159 * 179.97438 * 17 16 14 19 19 C 1.40224 * 126.61096 * 179.97438 * 18 17 16 20 20 C 1.38834 * 120.06586 * 359.72520 * 19 18 17 21 21 C 1.38120 * 119.92930 * 179.74764 * 20 19 18 22 22 C 1.38274 * 120.07170 * 0.52832 * 21 20 19 23 23 C 1.38287 * 120.12698 * 359.74647 * 22 21 20 24 24 C 1.38120 * 120.06492 * 359.97438 * 23 22 21 25 25 N 1.40209 * 106.77355 * 0.02562 * 18 17 16 26 26 N 1.28750 * 108.38581 * 359.72075 * 25 18 17 27 27 C 1.43623 * 120.06358 * 282.56182 * 13 12 11 28 28 C 1.48854 * 118.94177 * 34.48013 * 9 7 2 29 29 H 0.96997 * 119.99776 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.76432 * 33.21878 * 10 9 7 31 31 H 1.08997 * 109.75989 * 153.94172 * 10 9 7 32 32 H 1.09000 * 108.79097 * 161.00382 * 11 10 9 33 33 H 1.09001 * 109.03336 * 42.33228 * 11 10 9 34 34 H 1.08999 * 109.32686 * 298.17867 * 12 11 10 35 35 H 1.09003 * 109.32905 * 178.54065 * 12 11 10 36 36 H 1.07993 * 126.60655 * 0.02562 * 17 16 14 37 37 H 1.08003 * 120.02888 * 0.02562 * 20 19 18 38 38 H 1.08005 * 119.96363 * 180.29991 * 21 20 19 39 39 H 1.07997 * 119.94059 * 179.76905 * 22 21 20 40 40 H 1.07998 * 119.96011 * 180.02562 * 23 22 21 41 41 H 1.08002 * 120.03225 * 180.02562 * 24 23 22 42 42 H 1.08997 * 108.87866 * 211.46833 * 27 13 12 43 43 H 1.09006 * 108.86983 * 329.90427 * 27 13 12 44 44 H 1.09007 * 109.48035 * 20.66256 * 28 9 7 45 45 H 1.09003 * 109.49106 * 260.63679 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0880 -1.2036 -0.0685 9 7 1.3283 -2.3864 0.0885 10 6 1.9228 -3.4784 0.8045 11 6 2.8281 -4.2442 -0.1703 12 6 2.0583 -5.1273 -1.0607 13 7 1.0706 -4.3387 -1.8347 14 6 1.3140 -4.0351 -3.1251 15 8 2.3715 -4.3515 -3.6351 16 6 0.2975 -3.3191 -3.9187 17 6 0.3643 -3.0651 -5.2595 18 7 -0.7608 -2.3925 -5.5859 19 6 -1.1166 -1.9263 -6.8596 20 6 -0.2703 -2.1385 -7.9395 21 6 -0.6260 -1.6827 -9.1938 22 6 -1.8185 -1.0060 -9.3726 23 6 -2.6609 -0.7881 -8.2978 24 6 -2.3132 -1.2466 -7.0422 25 7 -1.5036 -2.2495 -4.4053 26 7 -0.8537 -2.8110 -3.4461 27 6 -0.1459 -3.8981 -1.2112 28 6 -0.0062 -2.4992 -0.5613 29 1 -0.4850 0.8400 0.0004 30 1 2.5147 -3.0953 1.6357 31 1 1.1429 -4.1400 1.1814 32 1 3.5328 -4.8458 0.4038 33 1 3.3851 -3.5286 -0.7751 34 1 1.5353 -5.8743 -0.4636 35 1 2.7392 -5.6280 -1.7490 36 1 1.1625 -3.3484 -5.9295 37 1 0.6632 -2.6635 -7.7996 38 1 0.0298 -1.8517 -10.0352 39 1 -2.0928 -0.6472 -10.3537 40 1 -3.5918 -0.2596 -8.4406 41 1 -2.9717 -1.0766 -6.2032 42 1 -0.9340 -3.8604 -1.9632 43 1 -0.4286 -4.6174 -0.4426 44 1 -0.1031 -1.7308 -1.3283 45 1 -0.7875 -2.3664 0.1871 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981532721.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:44 Heat of formation + Delta-G solvation = 126.313246 kcal Electronic energy + Delta-G solvation = -30125.259513 eV Core-core repulsion = 26146.117273 eV Total energy + Delta-G solvation = -3979.142240 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.56664 -41.00981 -40.13272 -38.54140 -36.07416 -35.67034 -34.25193 -32.81643 -32.44778 -31.73771 -30.71784 -29.23806 -27.28273 -25.72031 -25.33018 -25.11065 -23.75241 -22.59423 -22.32782 -21.45125 -20.59267 -19.30262 -18.57256 -17.79622 -17.61611 -17.25639 -17.04177 -16.77872 -16.34463 -15.98484 -15.90813 -15.57083 -15.43712 -15.08715 -14.78913 -14.57192 -14.47373 -14.18612 -13.95413 -13.84271 -13.61025 -13.35479 -13.19947 -12.81209 -12.73200 -12.55930 -12.48112 -12.32055 -12.13614 -12.06680 -11.91320 -11.68374 -11.49137 -11.41008 -11.03145 -10.64066 -10.48906 -10.09217 -9.60610 -9.47913 -8.47675 -7.84010 -5.37558 -0.62279 0.26779 0.53639 0.75866 0.90915 1.38855 1.40189 1.46880 2.00030 2.24615 2.47946 2.69627 3.07787 3.22149 3.30130 3.60613 3.73053 3.85086 3.86628 4.02025 4.06635 4.18537 4.27481 4.30619 4.35468 4.39475 4.51195 4.56775 4.58482 4.69212 4.82187 4.94923 4.96459 5.07442 5.14696 5.27227 5.28128 5.30883 5.39138 5.44452 5.48944 5.52819 5.63804 5.83777 5.89949 5.90351 6.43721 6.47434 6.77268 7.11622 7.22701 7.98755 8.41113 9.18453 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011378 B = 0.003779 C = 0.003179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2460.276083 B = 7406.957401 C = 8805.377935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.037 4.037 3 Si 0.954 3.046 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.272 1.272 7 C -0.266 4.266 8 H 0.050 0.950 9 N -0.609 5.609 10 C 0.157 3.843 11 C -0.155 4.155 12 C 0.126 3.874 13 N -0.569 5.569 14 C 0.599 3.401 15 O -0.574 6.574 16 C -0.109 4.109 17 C 0.099 3.901 18 N -0.303 5.303 19 C 0.098 3.902 20 C -0.128 4.128 21 C -0.093 4.093 22 C -0.106 4.106 23 C -0.100 4.100 24 C -0.124 4.124 25 N -0.088 5.088 26 N -0.199 5.199 27 C 0.079 3.921 28 C 0.185 3.815 29 H 0.247 0.753 30 H 0.038 0.962 31 H 0.054 0.946 32 H 0.092 0.908 33 H 0.027 0.973 34 H 0.100 0.900 35 H 0.084 0.916 36 H 0.238 0.762 37 H 0.150 0.850 38 H 0.169 0.831 39 H 0.166 0.834 40 H 0.158 0.842 41 H 0.125 0.875 42 H 0.102 0.898 43 H 0.079 0.921 44 H 0.050 0.950 45 H 0.009 0.991 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.810 -8.148 -19.287 21.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.233 4.233 3 Si 0.782 3.218 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.198 1.198 7 C -0.396 4.396 8 H 0.068 0.932 9 N -0.332 5.332 10 C 0.030 3.970 11 C -0.195 4.195 12 C 0.006 3.994 13 N -0.298 5.298 14 C 0.386 3.614 15 O -0.455 6.455 16 C -0.248 4.248 17 C -0.056 4.056 18 N -0.081 5.081 19 C 0.008 3.992 20 C -0.149 4.149 21 C -0.112 4.112 22 C -0.125 4.125 23 C -0.118 4.118 24 C -0.144 4.144 25 N -0.066 5.066 26 N -0.072 5.072 27 C -0.047 4.047 28 C 0.059 3.941 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.072 0.928 32 H 0.110 0.890 33 H 0.046 0.954 34 H 0.118 0.882 35 H 0.102 0.898 36 H 0.254 0.746 37 H 0.168 0.832 38 H 0.187 0.813 39 H 0.183 0.817 40 H 0.176 0.824 41 H 0.143 0.857 42 H 0.120 0.880 43 H 0.097 0.903 44 H 0.068 0.932 45 H 0.027 0.973 Dipole moment (debyes) X Y Z Total from point charges -4.693 -7.674 -18.819 20.858 hybrid contribution 1.147 1.103 0.190 1.603 sum -3.546 -6.571 -18.628 20.069 Atomic orbital electron populations 1.70144 1.06182 1.25333 1.55324 1.25905 0.96218 1.00843 1.00351 0.85563 0.77824 0.80277 0.78088 1.21320 1.21736 1.19803 1.19230 0.90522 0.85112 1.44784 0.93243 1.43888 1.18900 1.10316 1.60052 1.20439 0.94854 0.89213 0.92535 1.21627 0.99709 0.99095 0.99109 1.20833 0.91334 0.93074 0.94178 1.47338 1.21318 1.51791 1.09314 1.16934 0.84558 0.77895 0.82022 1.90689 1.25614 1.56951 1.72253 1.21591 0.97572 1.11940 0.93666 1.23706 0.91569 0.93781 0.96500 1.47827 1.14676 1.36782 1.08814 1.18130 0.98327 1.02727 0.80057 1.21307 0.99780 1.02088 0.91691 1.21479 0.97456 0.96086 0.96137 1.21809 0.93534 0.96748 1.00378 1.21440 1.01243 0.98459 0.90703 1.21124 0.94947 0.98297 0.99994 1.82023 1.17307 1.21587 0.85662 1.74783 1.04560 1.06095 1.21770 1.22424 0.86253 0.97273 0.98736 1.21565 0.85113 0.93214 0.94177 0.94357 0.94388 0.92750 0.88971 0.95362 0.88184 0.89811 0.74562 0.83232 0.81335 0.81671 0.82431 0.85665 0.88012 0.90271 0.93156 0.97302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.72 10.61 21.65 0.23 -56.49 16 2 C -0.04 -2.18 5.30 84.86 0.45 -1.73 16 3 Si 0.95 47.63 29.56 68.60 2.03 49.66 16 4 H -0.29 -14.23 7.11 99.48 0.71 -13.52 16 5 H -0.29 -14.46 7.11 99.48 0.71 -13.75 16 6 H -0.27 -13.05 7.11 99.48 0.71 -12.34 16 7 C -0.27 -15.45 9.18 84.03 0.77 -14.67 16 8 H 0.05 2.91 7.83 -2.91 -0.02 2.88 16 9 N -0.61 -31.59 2.53 -698.63 -1.77 -33.36 16 10 C 0.16 6.55 5.63 87.11 0.49 7.04 16 11 C -0.15 -5.60 5.61 28.94 0.16 -5.44 16 12 C 0.13 4.14 5.69 84.23 0.48 4.62 16 13 N -0.57 -22.12 2.45 -835.00 -2.05 -24.16 16 14 C 0.60 24.48 7.66 86.69 0.66 25.14 16 15 O -0.57 -24.50 16.33 -4.00 -0.07 -24.56 16 16 C -0.11 -4.20 6.68 40.82 0.27 -3.92 16 17 C 0.10 3.00 10.61 83.81 0.89 3.89 16 18 N -0.30 -9.28 3.82 -186.88 -0.71 -9.99 16 19 C 0.10 2.32 6.70 38.08 0.25 2.57 16 20 C -0.13 -2.09 9.47 22.38 0.21 -1.88 16 21 C -0.09 -0.98 10.04 22.25 0.22 -0.76 16 22 C -0.11 -1.04 10.04 22.29 0.22 -0.82 16 23 C -0.10 -1.39 10.04 22.25 0.22 -1.16 16 24 C -0.12 -2.67 9.68 22.38 0.22 -2.45 16 25 N -0.09 -3.33 13.12 37.02 0.49 -2.84 16 26 N -0.20 -8.20 7.82 -49.98 -0.39 -8.59 16 27 C 0.08 3.16 4.82 87.55 0.42 3.58 16 28 C 0.18 9.37 4.99 86.56 0.43 9.81 16 29 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16 30 H 0.04 1.62 8.02 -2.39 -0.02 1.60 16 31 H 0.05 2.03 7.59 -2.39 -0.02 2.02 16 32 H 0.09 2.65 8.14 -2.39 -0.02 2.64 16 33 H 0.03 1.24 7.90 -2.39 -0.02 1.22 16 34 H 0.10 2.59 8.05 -2.39 -0.02 2.57 16 35 H 0.08 2.69 7.16 -2.39 -0.02 2.67 16 36 H 0.24 5.11 7.13 -2.91 -0.02 5.09 16 37 H 0.15 1.87 6.81 -2.91 -0.02 1.85 16 38 H 0.17 0.67 8.06 -2.91 -0.02 0.65 16 39 H 0.17 0.51 8.06 -2.91 -0.02 0.48 16 40 H 0.16 1.38 8.06 -2.91 -0.02 1.35 16 41 H 0.13 3.04 7.73 -2.91 -0.02 3.02 16 42 H 0.10 4.09 4.83 -2.42 -0.01 4.07 16 43 H 0.08 2.73 7.73 -2.38 -0.02 2.71 16 44 H 0.05 2.93 5.81 -2.38 -0.01 2.91 16 45 H 0.01 0.49 7.95 -2.39 -0.02 0.47 16 Total: -1.00 -78.99 364.89 5.16 -73.83 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: 1.02 Total: 12.69 kcal Atomic # 6 Polarization: 17.44 SS G_CDS: 6.39 Total: 23.82 kcal Atomic # 7 Polarization: -131.23 SS G_CDS: -4.20 Total: -135.43 kcal Atomic # 8 Polarization: -24.50 SS G_CDS: -0.07 Total: -24.56 kcal Atomic # 14 Polarization: 47.63 SS G_CDS: 2.03 Total: 49.66 kcal Total: -78.99 5.16 -73.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981532721.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 200.143 kcal (2) G-P(sol) polarization free energy of solvation -78.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds