Wall clock time and date at job start Sat Apr 11 2020 06:19:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86804 * 119.99749 * 2 1 4 4 H 1.48503 * 109.46680 * 86.58883 * 3 2 1 5 5 H 1.48496 * 109.47127 * 326.58928 * 3 2 1 6 6 H 1.48500 * 109.46944 * 206.58822 * 3 2 1 7 7 C 1.38811 * 120.00136 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99794 * 201.58288 * 7 2 1 9 9 N 1.36939 * 120.00304 * 21.57349 * 7 2 1 10 10 C 1.43463 * 118.93878 * 202.20275 * 9 7 2 11 11 C 1.53798 * 107.95642 * 273.60792 * 10 9 7 12 12 C 1.47142 * 111.84450 * 281.66748 * 11 10 9 13 13 N 1.48213 * 110.33938 * 58.29990 * 12 11 10 14 14 C 1.34778 * 119.96924 * 102.51405 * 13 12 11 15 15 O 1.21582 * 119.99840 * 354.97256 * 14 13 12 16 16 C 1.47588 * 119.99850 * 174.97509 * 14 13 12 17 17 C 1.39977 * 120.59571 * 302.67009 * 16 14 13 18 18 C 1.38351 * 118.35017 * 179.78327 * 17 16 14 19 19 C 1.38390 * 119.45166 * 0.47908 * 18 17 16 20 20 N 1.31849 * 121.18425 * 359.76367 * 19 18 17 21 21 C 1.32261 * 121.80117 * 0.02562 * 20 19 18 22 22 N 1.39351 * 119.79854 * 180.02562 * 21 20 19 23 23 C 1.35934 * 126.10526 * 333.22803 * 22 21 20 24 24 C 1.35242 * 107.60330 * 179.84003 * 23 22 21 25 25 C 1.40011 * 107.96688 * 0.42272 * 24 23 22 26 26 N 1.30790 * 108.38559 * 359.73715 * 25 24 23 27 27 C 1.43618 * 120.06018 * 282.49196 * 13 12 11 28 28 C 1.48859 * 118.93628 * 21.93263 * 9 7 2 29 29 H 0.96994 * 120.00349 * 359.97438 * 1 2 3 30 30 H 1.08996 * 109.76446 * 33.22751 * 10 9 7 31 31 H 1.09004 * 109.76073 * 153.94785 * 10 9 7 32 32 H 1.09003 * 109.00543 * 42.28349 * 11 10 9 33 33 H 1.09005 * 109.00272 * 161.14036 * 11 10 9 34 34 H 1.09001 * 109.32477 * 178.56515 * 12 11 10 35 35 H 1.08999 * 109.32083 * 298.21031 * 12 11 10 36 36 H 1.08001 * 120.82252 * 0.02562 * 17 16 14 37 37 H 1.07992 * 120.27695 * 180.24546 * 18 17 16 38 38 H 1.07994 * 119.41289 * 179.78754 * 19 18 17 39 39 H 1.07999 * 126.20069 * 0.02562 * 23 22 21 40 40 H 1.08000 * 126.01668 * 180.18101 * 24 23 22 41 41 H 1.07997 * 125.80605 * 179.73313 * 25 24 23 42 42 H 1.09006 * 108.87699 * 211.44629 * 27 13 12 43 43 H 1.09001 * 108.87603 * 329.98591 * 27 13 12 44 44 H 1.08999 * 109.48263 * 260.62550 * 28 9 7 45 45 H 1.09005 * 109.47939 * 20.65969 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4254 2.0881 1.3977 5 1 1.4855 2.6308 -0.7709 6 1 3.5819 1.4205 -0.6266 7 6 2.0103 -1.2021 -0.0005 8 1 3.0335 -1.2350 0.3435 9 7 1.3976 -2.3464 -0.4371 10 6 1.9074 -3.6154 -0.0038 11 6 3.0327 -4.0284 -0.9674 12 6 2.5023 -4.5664 -2.2301 13 7 1.6371 -3.5630 -2.8945 14 6 2.1070 -2.8569 -3.9419 15 8 3.2676 -2.9763 -4.2839 16 6 1.2127 -1.9388 -4.6737 17 6 0.0297 -2.4094 -5.2553 18 6 -0.7765 -1.5074 -5.9265 19 6 -0.3896 -0.1814 -6.0118 20 7 0.7318 0.2393 -5.4606 21 6 1.5362 -0.5801 -4.8044 22 7 2.7113 -0.0904 -4.2375 23 6 3.4161 0.9910 -4.6637 24 6 4.4842 1.1312 -3.8460 25 6 4.4398 0.1024 -2.8973 26 7 3.3805 -0.6284 -3.1305 27 6 0.2983 -3.3429 -2.4235 28 6 0.2204 -2.2331 -1.3411 29 1 -0.4850 0.8400 0.0004 30 1 2.3024 -3.5278 1.0083 31 1 1.1110 -4.3594 -0.0255 32 1 3.6515 -3.1577 -1.1845 33 1 3.6480 -4.7904 -0.4889 34 1 3.3314 -4.8214 -2.8901 35 1 1.9174 -5.4626 -2.0228 36 1 -0.2488 -3.4501 -5.1785 37 1 -1.6981 -1.8361 -6.3835 38 1 -1.0176 0.5214 -6.5389 39 1 3.1666 1.6253 -5.5014 40 1 5.2405 1.8990 -3.9152 41 1 5.1581 -0.0600 -2.1074 42 1 -0.3299 -3.0574 -3.2673 43 1 -0.0832 -4.2713 -1.9986 44 1 -0.6955 -2.3496 -0.7617 45 1 0.2244 -1.2550 -1.8223 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981728182.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:51 Heat of formation + Delta-G solvation = 147.282820 kcal Electronic energy + Delta-G solvation = -32442.408690 eV Core-core repulsion = 28464.175759 eV Total energy + Delta-G solvation = -3978.232931 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.28792 -40.02963 -38.99892 -36.80059 -34.20886 -33.46165 -33.14904 -31.90181 -30.72786 -29.90465 -29.21056 -27.51073 -25.63628 -24.37829 -23.96239 -23.51582 -21.94061 -20.84442 -20.44790 -19.67296 -19.00006 -18.00862 -17.19941 -16.64787 -16.19691 -15.77034 -15.44328 -15.13450 -14.74935 -14.38089 -14.17032 -13.97809 -13.73519 -13.41625 -13.30516 -13.10019 -13.08597 -12.91467 -12.54214 -12.35183 -12.23658 -12.14042 -11.72501 -11.25473 -10.97304 -10.66593 -10.48065 -10.22390 -10.18063 -10.14078 -10.08775 -9.89526 -9.74851 -9.67824 -9.59828 -9.18966 -8.71123 -8.30289 -8.02770 -7.93682 -6.62814 -5.69177 -3.01603 0.74065 1.03130 2.41049 2.58110 3.09016 3.32355 3.44075 3.49137 3.53639 3.59076 3.89829 4.40565 4.61906 4.63319 4.76033 4.89310 5.01114 5.31143 5.34333 5.34979 5.38198 5.50608 5.63639 5.71134 5.75815 5.83464 5.94883 5.95019 5.98557 6.08871 6.10847 6.18934 6.31633 6.34862 6.39906 6.50982 6.61028 6.88854 6.97768 7.00647 7.16704 7.42804 7.44718 7.51699 7.67682 7.92158 8.00534 8.22068 8.52405 8.71342 9.30724 10.01591 10.44904 11.40093 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009006 B = 0.007705 C = 0.006102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3108.202648 B = 3633.119604 C = 4587.879360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.007 3.993 3 Si 0.879 3.121 4 H -0.294 1.294 5 H -0.296 1.296 6 H -0.269 1.269 7 C -0.225 4.225 8 H 0.060 0.940 9 N -0.583 5.583 10 C 0.164 3.836 11 C -0.169 4.169 12 C 0.137 3.863 13 N -0.574 5.574 14 C 0.586 3.414 15 O -0.533 6.533 16 C -0.160 4.160 17 C -0.030 4.030 18 C -0.192 4.192 19 C 0.144 3.856 20 N -0.506 5.506 21 C 0.422 3.578 22 N -0.331 5.331 23 C 0.060 3.940 24 C -0.260 4.260 25 C 0.056 3.944 26 N -0.203 5.203 27 C 0.074 3.926 28 C 0.171 3.829 29 H 0.248 0.752 30 H 0.044 0.956 31 H 0.030 0.970 32 H 0.075 0.925 33 H 0.051 0.949 34 H 0.074 0.926 35 H 0.058 0.942 36 H 0.145 0.855 37 H 0.145 0.855 38 H 0.167 0.833 39 H 0.172 0.828 40 H 0.149 0.851 41 H 0.183 0.817 42 H 0.064 0.936 43 H 0.061 0.939 44 H 0.037 0.963 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.728 -5.149 -11.689 12.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.190 4.190 3 Si 0.709 3.291 4 H -0.222 1.222 5 H -0.222 1.222 6 H -0.194 1.194 7 C -0.355 4.355 8 H 0.078 0.922 9 N -0.304 5.304 10 C 0.036 3.964 11 C -0.210 4.210 12 C 0.015 3.985 13 N -0.305 5.305 14 C 0.373 3.627 15 O -0.410 6.410 16 C -0.168 4.168 17 C -0.057 4.057 18 C -0.213 4.213 19 C -0.015 4.015 20 N -0.219 5.219 21 C 0.193 3.807 22 N -0.109 5.109 23 C -0.080 4.080 24 C -0.288 4.288 25 C -0.135 4.135 26 N -0.019 5.019 27 C -0.051 4.051 28 C 0.045 3.955 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.049 0.951 32 H 0.093 0.907 33 H 0.070 0.930 34 H 0.093 0.907 35 H 0.077 0.923 36 H 0.163 0.837 37 H 0.163 0.837 38 H 0.184 0.816 39 H 0.190 0.810 40 H 0.167 0.833 41 H 0.200 0.800 42 H 0.082 0.918 43 H 0.079 0.921 44 H 0.055 0.945 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.726 -5.253 -11.586 12.742 hybrid contribution 0.481 1.188 -0.019 1.281 sum -0.246 -4.065 -11.605 12.299 Atomic orbital electron populations 1.70063 1.05163 1.24932 1.55365 1.24668 0.94880 0.97730 1.01692 0.86632 0.80460 0.84866 0.77119 1.22193 1.22247 1.19413 1.18934 0.94091 0.85760 1.36699 0.92177 1.43565 1.33816 1.01013 1.51998 1.20253 0.93214 0.88052 0.94926 1.21870 1.01255 1.01176 0.96744 1.20515 0.94034 0.89182 0.94737 1.47139 1.14698 1.38820 1.29818 1.17427 0.86305 0.78911 0.80106 1.90722 1.16639 1.65213 1.68453 1.20521 0.98397 0.93684 1.04200 1.21578 0.90700 1.00716 0.92677 1.21996 1.01878 0.94559 1.02879 1.22631 0.90763 0.94480 0.93654 1.67003 1.05370 1.37417 1.12060 1.17412 0.84996 0.87167 0.91086 1.45715 1.17795 1.23023 1.24393 1.22655 0.93209 0.91287 1.00846 1.21548 1.02619 1.04544 1.00090 1.24022 0.96507 0.93798 0.99138 1.77987 1.06771 1.19275 0.97846 1.22373 0.82511 1.01193 0.99048 1.21839 0.89463 0.95654 0.88558 0.94196 0.93775 0.95141 0.90661 0.93039 0.90726 0.92330 0.83683 0.83696 0.81603 0.81045 0.83319 0.80016 0.91809 0.92083 0.94514 0.91151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.60 11.16 55.49 0.62 -25.98 16 2 C 0.01 0.21 4.78 -17.43 -0.08 0.12 16 3 Si 0.88 22.81 29.61 -169.99 -5.03 17.78 16 4 H -0.29 -7.66 7.11 56.52 0.40 -7.26 16 5 H -0.30 -8.02 7.11 56.52 0.40 -7.62 16 6 H -0.27 -6.68 6.49 56.52 0.37 -6.31 16 7 C -0.23 -6.07 9.26 -15.06 -0.14 -6.21 16 8 H 0.06 1.66 7.92 -52.49 -0.42 1.24 16 9 N -0.58 -13.97 2.54 -171.78 -0.44 -14.41 16 10 C 0.16 3.32 5.63 -5.23 -0.03 3.29 16 11 C -0.17 -3.09 5.64 -29.13 -0.16 -3.26 16 12 C 0.14 2.31 5.67 -5.91 -0.03 2.27 16 13 N -0.57 -10.56 2.46 -177.64 -0.44 -11.00 16 14 C 0.59 11.69 5.50 -12.45 -0.07 11.62 16 15 O -0.53 -12.04 15.17 5.29 0.08 -11.96 16 16 C -0.16 -2.91 4.89 -104.67 -0.51 -3.42 16 17 C -0.03 -0.41 7.75 -38.89 -0.30 -0.71 16 18 C -0.19 -2.13 10.09 -39.48 -0.40 -2.53 16 19 C 0.14 1.81 11.17 -17.49 -0.20 1.61 16 20 N -0.51 -8.58 10.01 -12.03 -0.12 -8.70 16 21 C 0.42 8.22 7.41 -154.36 -1.14 7.07 16 22 N -0.33 -6.92 3.59 -11.89 -0.04 -6.96 16 23 C 0.06 1.08 11.21 -16.80 -0.19 0.89 16 24 C -0.26 -4.50 10.80 -39.98 -0.43 -4.93 16 25 C 0.06 1.13 11.41 -17.33 -0.20 0.93 16 26 N -0.20 -4.57 9.43 30.65 0.29 -4.28 16 27 C 0.07 1.32 5.12 -4.40 -0.02 1.30 16 28 C 0.17 3.92 5.25 -1.56 -0.01 3.92 16 29 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 30 H 0.04 0.92 8.02 -51.93 -0.42 0.50 16 31 H 0.03 0.57 7.59 -51.93 -0.39 0.17 16 32 H 0.07 1.66 7.91 -51.93 -0.41 1.25 16 33 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.07 1.29 7.18 -51.93 -0.37 0.92 16 35 H 0.06 0.83 8.05 -51.93 -0.42 0.41 16 36 H 0.15 1.57 7.59 -52.49 -0.40 1.17 16 37 H 0.15 1.02 8.06 -52.49 -0.42 0.60 16 38 H 0.17 1.42 8.06 -52.49 -0.42 0.99 16 39 H 0.17 2.52 8.06 -52.49 -0.42 2.10 16 40 H 0.15 2.04 8.06 -52.49 -0.42 1.61 16 41 H 0.18 3.25 8.06 -52.49 -0.42 2.83 16 42 H 0.06 1.02 4.52 -51.93 -0.23 0.78 16 43 H 0.06 0.96 7.72 -51.93 -0.40 0.56 16 44 H 0.04 0.90 8.04 -51.93 -0.42 0.49 16 45 H 0.07 1.90 6.49 -51.93 -0.34 1.56 16 LS Contribution 364.02 15.07 5.49 5.49 Total: -1.00 -35.37 364.02 -9.44 -44.80 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -5.92 Total: 3.25 kcal Atomic # 6 Polarization: 15.88 SS G_CDS: -3.92 Total: 11.96 kcal Atomic # 7 Polarization: -71.20 SS G_CDS: -0.13 Total: -71.32 kcal Atomic # 8 Polarization: -12.04 SS G_CDS: 0.08 Total: -11.96 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -5.03 Total: 17.78 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -35.37 -9.44 -44.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981728182.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 192.086 kcal (2) G-P(sol) polarization free energy of solvation -35.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 156.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.803 kcal (6) G-S(sol) free energy of system = (1) + (5) 147.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds