Wall clock time and date at job start Sat Apr 11 2020 06:19:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 120.00085 * 2 1 4 4 H 1.48493 * 109.47074 * 239.99882 * 3 2 1 5 5 H 1.48499 * 109.46924 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47055 * 119.99393 * 3 2 1 7 7 C 1.38807 * 119.99878 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00315 * 197.97698 * 7 2 1 9 9 N 1.36937 * 120.00092 * 17.97712 * 7 2 1 10 10 C 1.43470 * 118.94046 * 204.01062 * 9 7 2 11 11 C 1.53788 * 107.96171 * 273.63340 * 10 9 7 12 12 C 1.47722 * 111.83736 * 281.59709 * 11 10 9 13 13 N 1.48219 * 110.06399 * 58.36733 * 12 11 10 14 14 C 1.34773 * 119.97094 * 102.59346 * 13 12 11 15 15 O 1.21558 * 119.99827 * 353.99762 * 14 13 12 16 16 C 1.47863 * 120.00136 * 173.99112 * 14 13 12 17 17 C 1.39657 * 120.08442 * 205.05456 * 16 14 13 18 18 C 1.38016 * 120.09528 * 180.02562 * 17 16 14 19 19 C 1.38172 * 120.27160 * 0.23759 * 18 17 16 20 20 C 1.39409 * 120.16679 * 359.48618 * 19 18 17 21 21 C 1.48423 * 120.04560 * 180.27755 * 20 19 18 22 22 N 1.33976 * 125.65082 * 179.97438 * 21 20 19 23 23 C 1.30679 * 109.78080 * 179.81941 * 22 21 20 24 24 N 1.34523 * 108.29018 * 0.44617 * 23 22 21 25 25 H 0.97008 * 126.73871 * 179.69672 * 24 23 22 26 26 N 1.31496 * 125.65236 * 0.25433 * 21 20 19 27 27 C 1.39090 * 119.90270 * 0.53529 * 20 19 18 28 28 C 1.43625 * 120.05801 * 282.32187 * 13 12 11 29 29 C 1.48855 * 118.94017 * 23.99421 * 9 7 2 30 30 H 0.97002 * 119.99623 * 0.02562 * 1 2 3 31 31 H 1.09001 * 109.76126 * 33.25086 * 10 9 7 32 32 H 1.08998 * 109.76076 * 153.96146 * 10 9 7 33 33 H 1.09001 * 109.00906 * 42.27460 * 11 10 9 34 34 H 1.09003 * 109.00671 * 161.05765 * 11 10 9 35 35 H 1.08998 * 109.40070 * 298.22766 * 12 11 10 36 36 H 1.08993 * 109.53127 * 178.58963 * 12 11 10 37 37 H 1.07998 * 119.95496 * 0.02985 * 17 16 14 38 38 H 1.07994 * 119.86741 * 179.97438 * 18 17 16 39 39 H 1.07992 * 119.91067 * 179.74296 * 19 18 17 40 40 H 1.07996 * 125.85747 * 180.21267 * 23 22 21 41 41 H 1.08005 * 120.13273 * 179.70683 * 27 20 19 42 42 H 1.09004 * 108.86901 * 211.70137 * 28 13 12 43 43 H 1.09000 * 108.87553 * 330.23475 * 28 13 12 44 44 H 1.08995 * 109.48216 * 20.63418 * 29 9 7 45 45 H 1.09002 * 109.48639 * 260.61183 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2124 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6965 1.2126 7 6 2.0102 -1.2021 0.0005 8 1 3.0507 -1.2249 0.2892 9 7 1.3756 -2.3592 -0.3650 10 6 1.8864 -3.6119 0.1130 11 6 2.9809 -4.0802 -0.8605 12 6 2.4088 -4.6747 -2.0858 13 7 1.5359 -3.6906 -2.7688 14 6 1.9823 -3.0383 -3.8604 15 8 3.1352 -3.1743 -4.2207 16 6 1.0694 -2.1572 -4.6199 17 6 1.3078 -1.9009 -5.9719 18 6 0.4563 -1.0781 -6.6810 19 6 -0.6329 -0.4999 -6.0576 20 6 -0.8847 -0.7527 -4.7100 21 6 -2.0589 -0.1351 -4.0447 22 7 -2.4059 -0.3007 -2.7613 23 6 -3.4870 0.3865 -2.5032 24 7 -3.8704 1.0100 -3.6319 25 1 -4.6422 1.5871 -3.7426 26 7 -2.9339 0.6612 -4.6185 27 6 -0.0308 -1.5804 -3.9885 28 6 0.2127 -3.4358 -2.2717 29 6 0.1780 -2.2769 -1.2450 30 1 -0.4850 0.8401 -0.0004 31 1 2.3100 -3.4813 1.1088 32 1 1.0833 -4.3481 0.1478 33 1 3.6009 -3.2267 -1.1349 34 1 3.6035 -4.8241 -0.3634 35 1 1.8224 -5.5547 -1.8216 36 1 3.2144 -4.9699 -2.7580 37 1 2.1597 -2.3471 -6.4634 38 1 0.6443 -0.8820 -7.7262 39 1 -1.2931 0.1463 -6.6170 40 1 -3.9890 0.4412 -1.5486 41 1 -0.2197 -1.7750 -2.9431 42 1 -0.4364 -3.1836 -3.1103 43 1 -0.1646 -4.3399 -1.7938 44 1 0.1797 -1.3233 -1.7730 45 1 -0.7247 -2.3551 -0.6390 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981738759.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:54 Heat of formation + Delta-G solvation = 163.603278 kcal Electronic energy + Delta-G solvation = -31294.838815 eV Core-core repulsion = 27317.313592 eV Total energy + Delta-G solvation = -3977.525223 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.84579 -40.34438 -38.14167 -36.92149 -34.23229 -33.30115 -32.97908 -31.57464 -31.05451 -30.12431 -29.74536 -27.79387 -25.56799 -23.99198 -23.64669 -22.96059 -22.66828 -21.62392 -20.19607 -19.68495 -18.65457 -18.10500 -17.14990 -16.62952 -16.12917 -15.77086 -15.27202 -15.15267 -14.93324 -14.63495 -14.32042 -14.05696 -13.80611 -13.65021 -13.48652 -12.86909 -12.61857 -12.58157 -12.29828 -12.11376 -11.98585 -11.69881 -11.44946 -11.31152 -10.97995 -10.75133 -10.60182 -10.43899 -10.29640 -10.20095 -9.97928 -9.79857 -9.72216 -9.68561 -9.60820 -9.26309 -8.62352 -8.40220 -8.27923 -7.96144 -6.62751 -5.69339 -3.08463 0.96440 1.36460 1.97695 2.75164 3.02904 3.43653 3.47842 3.49781 3.54239 3.57510 4.11861 4.23545 4.57902 4.72208 4.96254 5.07676 5.19244 5.26603 5.41118 5.42732 5.50579 5.62029 5.70896 5.76100 5.83265 5.90222 5.98462 6.11597 6.15519 6.19089 6.32377 6.35940 6.37780 6.50777 6.56113 6.61723 6.66320 6.71813 6.88457 6.96597 7.06572 7.12511 7.15110 7.40837 7.54661 7.90157 8.01647 8.26342 8.51259 8.70446 9.28650 9.96788 10.41892 11.36792 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.008637 B = 0.006263 C = 0.004594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3240.945128 B = 4469.376489 C = 6093.462969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.010 3.990 3 Si 0.888 3.112 4 H -0.285 1.285 5 H -0.293 1.293 6 H -0.284 1.284 7 C -0.259 4.259 8 H 0.063 0.937 9 N -0.587 5.587 10 C 0.163 3.837 11 C -0.171 4.171 12 C 0.131 3.869 13 N -0.576 5.576 14 C 0.564 3.436 15 O -0.552 6.552 16 C -0.135 4.135 17 C -0.052 4.052 18 C -0.141 4.141 19 C -0.068 4.068 20 C -0.030 4.030 21 C 0.272 3.728 22 N -0.498 5.498 23 C 0.267 3.733 24 N -0.492 5.492 25 H 0.438 0.562 26 N -0.318 5.318 27 C -0.090 4.090 28 C 0.049 3.951 29 C 0.150 3.850 30 H 0.252 0.748 31 H 0.046 0.954 32 H 0.033 0.967 33 H 0.070 0.930 34 H 0.054 0.946 35 H 0.062 0.938 36 H 0.077 0.923 37 H 0.132 0.868 38 H 0.130 0.870 39 H 0.129 0.871 40 H 0.223 0.777 41 H 0.210 0.790 42 H 0.086 0.914 43 H 0.064 0.936 44 H 0.104 0.896 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.903 -3.733 -8.053 12.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.190 4.190 3 Si 0.718 3.282 4 H -0.212 1.212 5 H -0.219 1.219 6 H -0.210 1.210 7 C -0.389 4.389 8 H 0.080 0.920 9 N -0.309 5.309 10 C 0.034 3.966 11 C -0.212 4.212 12 C 0.009 3.991 13 N -0.306 5.306 14 C 0.353 3.647 15 O -0.432 6.432 16 C -0.138 4.138 17 C -0.072 4.072 18 C -0.159 4.159 19 C -0.088 4.088 20 C -0.032 4.032 21 C -0.007 4.007 22 N -0.224 5.224 23 C -0.032 4.032 24 N -0.211 5.211 25 H 0.283 0.717 26 N -0.147 5.147 27 C -0.109 4.109 28 C -0.076 4.076 29 C 0.025 3.975 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.051 0.949 33 H 0.088 0.912 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.095 0.905 37 H 0.150 0.850 38 H 0.148 0.852 39 H 0.147 0.853 40 H 0.239 0.761 41 H 0.225 0.775 42 H 0.104 0.896 43 H 0.082 0.918 44 H 0.121 0.879 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -8.232 -3.713 -8.664 12.515 hybrid contribution -0.247 1.665 0.226 1.699 sum -8.480 -2.048 -8.438 12.137 Atomic orbital electron populations 1.70012 1.04508 1.25233 1.53212 1.24863 0.95277 0.97767 1.01062 0.86595 0.79241 0.84235 0.78126 1.21195 1.21870 1.21035 1.19041 0.93174 0.85370 1.41306 0.91957 1.43579 1.31949 1.01506 1.53820 1.20282 0.93464 0.88211 0.94620 1.21994 1.01094 1.00905 0.97195 1.20699 0.93982 0.89821 0.94555 1.47234 1.15791 1.40899 1.26700 1.18145 0.86815 0.79426 0.80272 1.90694 1.17933 1.64622 1.69973 1.19905 0.97133 1.01827 0.94897 1.21319 0.97807 0.95254 0.92791 1.20928 0.95557 0.99212 1.00209 1.21328 0.96774 0.97371 0.93352 1.17399 0.93098 0.99793 0.92955 1.22272 0.94728 0.94770 0.88967 1.70747 1.12832 1.24742 1.14082 1.26187 0.92899 0.90786 0.93327 1.48145 1.24411 1.40515 1.07980 0.71722 1.78096 1.03378 1.20690 1.12584 1.23886 0.90614 0.91231 1.05177 1.22965 0.83449 1.01656 0.99509 1.22232 0.89991 0.95470 0.89820 0.93787 0.93533 0.94865 0.91152 0.92699 0.91966 0.90487 0.84972 0.85210 0.85261 0.76096 0.77489 0.89620 0.91806 0.87880 0.93146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.97 11.05 55.49 0.61 -23.35 16 2 C 0.01 0.26 4.86 -17.43 -0.08 0.18 16 3 Si 0.89 22.25 29.59 -169.99 -5.03 17.22 16 4 H -0.29 -7.38 7.11 56.52 0.40 -6.97 16 5 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 6 H -0.28 -7.04 7.11 56.52 0.40 -6.63 16 7 C -0.26 -7.02 9.26 -15.06 -0.14 -7.16 16 8 H 0.06 1.72 7.89 -52.48 -0.41 1.31 16 9 N -0.59 -14.06 2.54 -172.03 -0.44 -14.50 16 10 C 0.16 3.30 5.63 -5.24 -0.03 3.27 16 11 C -0.17 -3.15 5.65 -28.87 -0.16 -3.31 16 12 C 0.13 2.25 5.71 -5.65 -0.03 2.22 16 13 N -0.58 -11.04 2.45 -177.45 -0.43 -11.47 16 14 C 0.56 11.68 7.51 -12.32 -0.09 11.59 16 15 O -0.55 -12.59 16.09 5.31 0.09 -12.51 16 16 C -0.13 -2.54 5.62 -105.01 -0.59 -3.13 16 17 C -0.05 -0.83 9.58 -39.13 -0.38 -1.21 16 18 C -0.14 -1.94 10.02 -39.69 -0.40 -2.33 16 19 C -0.07 -1.01 9.68 -39.17 -0.38 -1.39 16 20 C -0.03 -0.52 5.87 -104.95 -0.62 -1.14 16 21 C 0.27 4.74 7.77 -156.62 -1.22 3.52 16 22 N -0.50 -8.63 10.82 -12.38 -0.13 -8.76 16 23 C 0.27 3.37 13.11 -90.70 -1.19 2.18 16 24 N -0.49 -5.58 7.44 29.52 0.22 -5.36 16 25 H 0.44 3.02 8.96 -182.34 -1.63 1.39 16 26 N -0.32 -4.87 12.42 32.10 0.40 -4.47 16 27 C -0.09 -1.72 6.80 -38.85 -0.26 -1.98 16 28 C 0.05 0.91 4.71 -4.58 -0.02 0.89 16 29 C 0.15 3.34 4.42 -1.75 -0.01 3.33 16 30 H 0.25 6.74 8.31 -40.82 -0.34 6.40 16 31 H 0.05 0.96 8.02 -51.93 -0.42 0.54 16 32 H 0.03 0.61 7.59 -51.93 -0.39 0.22 16 33 H 0.07 1.55 7.91 -51.93 -0.41 1.14 16 34 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.06 0.90 8.05 -51.93 -0.42 0.48 16 36 H 0.08 1.33 7.20 -51.93 -0.37 0.96 16 37 H 0.13 1.97 7.84 -52.49 -0.41 1.55 16 38 H 0.13 1.34 8.06 -52.49 -0.42 0.91 16 39 H 0.13 1.69 7.82 -52.49 -0.41 1.28 16 40 H 0.22 1.82 8.06 -52.49 -0.42 1.39 16 41 H 0.21 4.22 1.26 -52.52 -0.07 4.16 16 42 H 0.09 1.52 4.61 -51.93 -0.24 1.28 16 43 H 0.06 1.04 7.72 -51.93 -0.40 0.64 16 44 H 0.10 2.56 4.17 -51.93 -0.22 2.34 16 45 H 0.05 1.20 8.01 -51.93 -0.42 0.78 16 LS Contribution 359.56 15.07 5.42 5.42 Total: -1.00 -34.07 359.56 -11.53 -45.60 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: -6.63 Total: 6.68 kcal Atomic # 6 Polarization: 11.11 SS G_CDS: -5.60 Total: 5.51 kcal Atomic # 7 Polarization: -68.14 SS G_CDS: 0.23 Total: -67.92 kcal Atomic # 8 Polarization: -12.59 SS G_CDS: 0.09 Total: -12.51 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.03 Total: 17.22 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -34.07 -11.53 -45.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981738759.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 209.203 kcal (2) G-P(sol) polarization free energy of solvation -34.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 175.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.600 kcal (6) G-S(sol) free energy of system = (1) + (5) 163.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds