Wall clock time and date at job start Sat Apr 11 2020 06:19:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 120.00085 * 2 1 4 4 H 1.48493 * 109.47074 * 239.99882 * 3 2 1 5 5 H 1.48499 * 109.46924 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47055 * 119.99393 * 3 2 1 7 7 C 1.38807 * 119.99878 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00315 * 197.97698 * 7 2 1 9 9 N 1.36937 * 120.00092 * 17.97712 * 7 2 1 10 10 C 1.43470 * 118.94046 * 204.01062 * 9 7 2 11 11 C 1.53788 * 107.96171 * 273.63340 * 10 9 7 12 12 C 1.47722 * 111.83736 * 281.59709 * 11 10 9 13 13 N 1.48219 * 110.06399 * 58.36733 * 12 11 10 14 14 C 1.34773 * 119.97094 * 102.59346 * 13 12 11 15 15 O 1.21558 * 119.99827 * 353.99762 * 14 13 12 16 16 C 1.47863 * 120.00136 * 173.99112 * 14 13 12 17 17 C 1.39657 * 120.08442 * 205.05456 * 16 14 13 18 18 C 1.38016 * 120.09528 * 180.02562 * 17 16 14 19 19 C 1.38172 * 120.27160 * 0.23759 * 18 17 16 20 20 C 1.39409 * 120.16679 * 359.48618 * 19 18 17 21 21 C 1.48423 * 120.04560 * 180.27755 * 20 19 18 22 22 N 1.33976 * 125.65082 * 179.97438 * 21 20 19 23 23 C 1.30679 * 109.78080 * 179.81941 * 22 21 20 24 24 N 1.34523 * 108.29018 * 0.44617 * 23 22 21 25 25 H 0.97008 * 126.73871 * 179.69672 * 24 23 22 26 26 N 1.31496 * 125.65236 * 0.25433 * 21 20 19 27 27 C 1.39090 * 119.90270 * 0.53529 * 20 19 18 28 28 C 1.43625 * 120.05801 * 282.32187 * 13 12 11 29 29 C 1.48855 * 118.94017 * 23.99421 * 9 7 2 30 30 H 0.97002 * 119.99623 * 0.02562 * 1 2 3 31 31 H 1.09001 * 109.76126 * 33.25086 * 10 9 7 32 32 H 1.08998 * 109.76076 * 153.96146 * 10 9 7 33 33 H 1.09001 * 109.00906 * 42.27460 * 11 10 9 34 34 H 1.09003 * 109.00671 * 161.05765 * 11 10 9 35 35 H 1.08998 * 109.40070 * 298.22766 * 12 11 10 36 36 H 1.08993 * 109.53127 * 178.58963 * 12 11 10 37 37 H 1.07998 * 119.95496 * 0.02985 * 17 16 14 38 38 H 1.07994 * 119.86741 * 179.97438 * 18 17 16 39 39 H 1.07992 * 119.91067 * 179.74296 * 19 18 17 40 40 H 1.07996 * 125.85747 * 180.21267 * 23 22 21 41 41 H 1.08005 * 120.13273 * 179.70683 * 27 20 19 42 42 H 1.09004 * 108.86901 * 211.70137 * 28 13 12 43 43 H 1.09000 * 108.87553 * 330.23475 * 28 13 12 44 44 H 1.08995 * 109.48216 * 20.63418 * 29 9 7 45 45 H 1.09002 * 109.48639 * 260.61183 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2124 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6965 1.2126 7 6 2.0102 -1.2021 0.0005 8 1 3.0507 -1.2249 0.2892 9 7 1.3756 -2.3592 -0.3650 10 6 1.8864 -3.6119 0.1130 11 6 2.9809 -4.0802 -0.8605 12 6 2.4088 -4.6747 -2.0858 13 7 1.5359 -3.6906 -2.7688 14 6 1.9823 -3.0383 -3.8604 15 8 3.1352 -3.1743 -4.2207 16 6 1.0694 -2.1572 -4.6199 17 6 1.3078 -1.9009 -5.9719 18 6 0.4563 -1.0781 -6.6810 19 6 -0.6329 -0.4999 -6.0576 20 6 -0.8847 -0.7527 -4.7100 21 6 -2.0589 -0.1351 -4.0447 22 7 -2.4059 -0.3007 -2.7613 23 6 -3.4870 0.3865 -2.5032 24 7 -3.8704 1.0100 -3.6319 25 1 -4.6422 1.5871 -3.7426 26 7 -2.9339 0.6612 -4.6185 27 6 -0.0308 -1.5804 -3.9885 28 6 0.2127 -3.4358 -2.2717 29 6 0.1780 -2.2769 -1.2450 30 1 -0.4850 0.8401 -0.0004 31 1 2.3100 -3.4813 1.1088 32 1 1.0833 -4.3481 0.1478 33 1 3.6009 -3.2267 -1.1349 34 1 3.6035 -4.8241 -0.3634 35 1 1.8224 -5.5547 -1.8216 36 1 3.2144 -4.9699 -2.7580 37 1 2.1597 -2.3471 -6.4634 38 1 0.6443 -0.8820 -7.7262 39 1 -1.2931 0.1463 -6.6170 40 1 -3.9890 0.4412 -1.5486 41 1 -0.2197 -1.7750 -2.9431 42 1 -0.4364 -3.1836 -3.1103 43 1 -0.1646 -4.3399 -1.7938 44 1 0.1797 -1.3233 -1.7730 45 1 -0.7247 -2.3551 -0.6390 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981738759.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:53 Heat of formation + Delta-G solvation = 143.496670 kcal Electronic energy + Delta-G solvation = -31295.710702 eV Core-core repulsion = 27317.313592 eV Total energy + Delta-G solvation = -3978.397111 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.94048 -41.79465 -39.46837 -38.58388 -35.96599 -34.83360 -34.10801 -32.94630 -32.68833 -31.50705 -30.93371 -29.45293 -27.23882 -25.50541 -25.22687 -24.26752 -23.94571 -22.85872 -21.56088 -21.31672 -20.03194 -19.19060 -18.79560 -18.04097 -17.71518 -17.32695 -16.73370 -16.40246 -16.31656 -16.02150 -15.85928 -15.59545 -15.34030 -15.06109 -14.91399 -14.46257 -14.12506 -13.94801 -13.91243 -13.59686 -13.16400 -13.11225 -13.06399 -12.87255 -12.63631 -12.54522 -12.37201 -12.10759 -11.95006 -11.67459 -11.43931 -11.39948 -11.32827 -10.97123 -10.86451 -10.72475 -10.38725 -9.90549 -9.60417 -9.44687 -8.55838 -7.74368 -5.13755 -0.27272 0.08026 0.89632 1.39302 1.43091 1.48475 1.71847 1.83783 2.12170 2.19368 2.53990 2.88506 3.10860 3.34413 3.46280 3.71417 3.74345 4.05804 4.10870 4.13651 4.22002 4.24158 4.32239 4.33458 4.49259 4.53185 4.58962 4.71152 4.73632 4.85298 4.94937 4.98322 5.07742 5.16240 5.24661 5.28383 5.32204 5.38527 5.44180 5.49759 5.53415 5.70012 5.80010 5.81781 5.87314 6.33254 6.47261 6.50143 7.16350 7.19234 7.27744 8.04307 8.43017 9.27292 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.008637 B = 0.006263 C = 0.004594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3240.945128 B = 4469.376489 C = 6093.462969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C -0.026 4.026 3 Si 0.929 3.071 4 H -0.301 1.301 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.269 4.269 8 H 0.047 0.953 9 N -0.601 5.601 10 C 0.158 3.842 11 C -0.156 4.156 12 C 0.126 3.874 13 N -0.577 5.577 14 C 0.554 3.446 15 O -0.585 6.585 16 C -0.158 4.158 17 C -0.057 4.057 18 C -0.122 4.122 19 C -0.062 4.062 20 C -0.044 4.044 21 C 0.250 3.750 22 N -0.546 5.546 23 C 0.274 3.726 24 N -0.471 5.471 25 H 0.458 0.542 26 N -0.326 5.326 27 C -0.109 4.109 28 C 0.061 3.939 29 C 0.161 3.839 30 H 0.249 0.751 31 H 0.038 0.962 32 H 0.058 0.942 33 H 0.025 0.975 34 H 0.088 0.912 35 H 0.101 0.899 36 H 0.075 0.925 37 H 0.141 0.859 38 H 0.173 0.827 39 H 0.150 0.850 40 H 0.261 0.739 41 H 0.194 0.806 42 H 0.095 0.905 43 H 0.090 0.910 44 H 0.080 0.920 45 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.283 -4.092 -9.133 14.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.224 4.224 3 Si 0.759 3.241 4 H -0.228 1.228 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.400 4.400 8 H 0.064 0.936 9 N -0.323 5.323 10 C 0.031 3.969 11 C -0.197 4.197 12 C 0.005 3.995 13 N -0.306 5.306 14 C 0.345 3.655 15 O -0.467 6.467 16 C -0.161 4.161 17 C -0.077 4.077 18 C -0.140 4.140 19 C -0.083 4.083 20 C -0.047 4.047 21 C -0.029 4.029 22 N -0.273 5.273 23 C -0.024 4.024 24 N -0.192 5.192 25 H 0.308 0.692 26 N -0.157 5.157 27 C -0.128 4.128 28 C -0.064 4.064 29 C 0.037 3.963 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.077 0.923 33 H 0.044 0.956 34 H 0.107 0.893 35 H 0.120 0.880 36 H 0.094 0.906 37 H 0.159 0.841 38 H 0.191 0.809 39 H 0.168 0.832 40 H 0.277 0.723 41 H 0.210 0.790 42 H 0.113 0.887 43 H 0.109 0.891 44 H 0.097 0.903 45 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -9.655 -4.078 -9.726 14.298 hybrid contribution 0.113 1.820 0.571 1.911 sum -9.541 -2.257 -9.155 13.414 Atomic orbital electron populations 1.70093 1.04639 1.25092 1.53485 1.25274 0.96034 0.99301 1.01840 0.85953 0.78310 0.82417 0.77389 1.22843 1.21606 1.20491 1.19109 0.92746 0.87014 1.41158 0.93562 1.43785 1.32215 1.01794 1.54531 1.20449 0.94540 0.87414 0.94533 1.21804 1.00196 1.00095 0.97605 1.20894 0.94487 0.90496 0.93612 1.47376 1.16136 1.40735 1.26347 1.18587 0.86751 0.79473 0.80712 1.90655 1.19157 1.65932 1.71000 1.19945 0.97327 1.02708 0.96135 1.21540 0.98558 0.95680 0.91903 1.21352 0.93834 0.96948 1.01826 1.21622 0.97170 0.97048 0.92423 1.17645 0.93230 0.99714 0.94102 1.22327 0.95379 0.95852 0.89368 1.70697 1.15053 1.26891 1.14679 1.26862 0.91759 0.89268 0.94540 1.48041 1.24172 1.39961 1.06978 0.69238 1.77971 1.03670 1.20360 1.13730 1.23689 0.91545 0.92796 1.04792 1.22754 0.83508 1.01117 0.99008 1.22001 0.88390 0.96168 0.89789 0.94182 0.94359 0.92343 0.95582 0.89336 0.88045 0.90647 0.84105 0.80939 0.83215 0.72301 0.78970 0.88727 0.89129 0.90265 0.95122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -48.87 11.05 21.65 0.24 -48.63 16 2 C -0.03 -1.45 4.86 84.86 0.41 -1.04 16 3 Si 0.93 46.62 29.59 68.60 2.03 48.65 16 4 H -0.30 -15.73 7.11 99.48 0.71 -15.02 16 5 H -0.29 -14.32 7.11 99.48 0.71 -13.61 16 6 H -0.28 -13.62 7.11 99.48 0.71 -12.92 16 7 C -0.27 -15.00 9.26 84.03 0.78 -14.22 16 8 H 0.05 2.66 7.89 -2.91 -0.02 2.64 16 9 N -0.60 -29.19 2.54 -698.17 -1.77 -30.96 16 10 C 0.16 6.30 5.63 87.21 0.49 6.79 16 11 C -0.16 -5.64 5.65 29.21 0.17 -5.48 16 12 C 0.13 4.14 5.71 84.40 0.48 4.63 16 13 N -0.58 -21.92 2.45 -833.60 -2.04 -23.96 16 14 C 0.55 23.26 7.51 86.79 0.65 23.92 16 15 O -0.58 -27.21 16.09 -3.90 -0.06 -27.28 16 16 C -0.16 -6.01 5.62 -20.12 -0.11 -6.13 16 17 C -0.06 -1.78 9.58 22.56 0.22 -1.56 16 18 C -0.12 -3.05 10.02 22.20 0.22 -2.83 16 19 C -0.06 -1.75 9.68 22.54 0.22 -1.53 16 20 C -0.04 -1.54 5.87 -20.08 -0.12 -1.66 16 21 C 0.25 8.63 7.77 137.47 1.07 9.70 16 22 N -0.55 -18.85 10.82 -193.08 -2.09 -20.94 16 23 C 0.27 6.52 13.11 180.38 2.37 8.88 16 24 N -0.47 -9.77 7.44 -60.52 -0.45 -10.22 16 25 H 0.46 5.17 8.96 -213.10 -1.91 3.26 16 26 N -0.33 -9.57 12.42 -52.34 -0.65 -10.22 16 27 C -0.11 -4.22 6.80 22.74 0.15 -4.06 16 28 C 0.06 2.22 4.71 87.55 0.41 2.63 16 29 C 0.16 7.29 4.42 86.56 0.38 7.67 16 30 H 0.25 13.45 8.31 -92.71 -0.77 12.68 16 31 H 0.04 1.57 8.02 -2.39 -0.02 1.55 16 32 H 0.06 2.03 7.59 -2.39 -0.02 2.02 16 33 H 0.03 1.16 7.91 -2.39 -0.02 1.14 16 34 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 35 H 0.10 2.58 8.05 -2.39 -0.02 2.56 16 36 H 0.08 2.54 7.20 -2.39 -0.02 2.52 16 37 H 0.14 4.06 7.84 -2.91 -0.02 4.04 16 38 H 0.17 2.80 8.06 -2.91 -0.02 2.78 16 39 H 0.15 3.53 7.82 -2.91 -0.02 3.51 16 40 H 0.26 3.65 8.06 -2.91 -0.02 3.63 16 41 H 0.19 8.03 1.26 -2.94 0.00 8.03 16 42 H 0.10 3.36 4.61 -2.38 -0.01 3.35 16 43 H 0.09 2.78 7.72 -2.39 -0.02 2.76 16 44 H 0.08 4.05 4.17 -2.39 -0.01 4.04 16 45 H 0.03 1.49 8.01 -2.39 -0.02 1.47 16 Total: -1.00 -77.01 359.56 2.15 -74.86 By element: Atomic # 1 Polarization: 23.85 SS G_CDS: -0.85 Total: 23.00 kcal Atomic # 6 Polarization: 17.92 SS G_CDS: 7.79 Total: 25.71 kcal Atomic # 7 Polarization: -138.18 SS G_CDS: -6.76 Total: -144.94 kcal Atomic # 8 Polarization: -27.21 SS G_CDS: -0.06 Total: -27.28 kcal Atomic # 14 Polarization: 46.62 SS G_CDS: 2.03 Total: 48.65 kcal Total: -77.01 2.15 -74.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981738759.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 218.361 kcal (2) G-P(sol) polarization free energy of solvation -77.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 141.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 143.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds