Wall clock time and date at job start Sat Apr 11 2020 06:20:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86803 * 119.99967 * 2 1 4 4 H 1.48504 * 109.46954 * 85.88633 * 3 2 1 5 5 H 1.48498 * 109.47191 * 325.89072 * 3 2 1 6 6 H 1.48492 * 109.47124 * 205.88829 * 3 2 1 7 7 C 1.38805 * 119.99873 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00598 * 25.17825 * 7 2 1 9 9 N 1.36940 * 119.99792 * 205.18332 * 7 2 1 10 10 C 1.43463 * 118.94005 * 205.55265 * 9 7 2 11 11 C 1.53793 * 107.96217 * 273.61464 * 10 9 7 12 12 C 1.47147 * 111.83486 * 281.66253 * 11 10 9 13 13 N 1.48219 * 110.34276 * 58.30026 * 12 11 10 14 14 C 1.34776 * 119.96725 * 102.50816 * 13 12 11 15 15 O 1.21610 * 120.00548 * 4.69240 * 14 13 12 16 16 C 1.47289 * 119.99477 * 184.68913 * 14 13 12 17 17 C 1.37964 * 126.81197 * 307.40572 * 16 14 13 18 18 N 1.34158 * 107.88782 * 179.97438 * 17 16 14 19 19 H 0.96999 * 125.16162 * 180.02562 * 18 17 16 20 20 N 1.39770 * 109.67635 * 359.97438 * 18 17 16 21 21 C 1.31367 * 109.07503 * 359.74374 * 20 18 17 22 22 C 1.48303 * 126.50696 * 180.27012 * 21 20 18 23 23 C 1.39805 * 120.53740 * 325.13617 * 22 21 20 24 24 C 1.38404 * 118.30455 * 180.02562 * 23 22 21 25 25 C 1.38322 * 119.28966 * 0.02562 * 24 23 22 26 26 N 1.31895 * 121.03411 * 0.02562 * 25 24 23 27 27 C 1.31736 * 121.86114 * 359.65338 * 26 25 24 28 28 C 1.43622 * 120.05788 * 282.48860 * 13 12 11 29 29 C 1.48854 * 118.94208 * 25.28503 * 9 7 2 30 30 H 0.96994 * 119.99892 * 184.63234 * 1 2 3 31 31 H 1.09005 * 109.76349 * 33.22916 * 10 9 7 32 32 H 1.08999 * 109.76487 * 153.94362 * 10 9 7 33 33 H 1.08995 * 109.00881 * 42.26886 * 11 10 9 34 34 H 1.09003 * 109.01115 * 161.13665 * 11 10 9 35 35 H 1.09008 * 109.32260 * 178.56311 * 12 11 10 36 36 H 1.08996 * 109.33121 * 298.20325 * 12 11 10 37 37 H 1.08006 * 126.05257 * 359.93930 * 17 16 14 38 38 H 1.07993 * 120.84597 * 359.97438 * 23 22 21 39 39 H 1.08001 * 120.35943 * 180.02562 * 24 23 22 40 40 H 1.08000 * 119.48619 * 179.97438 * 25 24 23 41 41 H 1.08003 * 119.71161 * 180.31693 * 27 26 25 42 42 H 1.08998 * 108.87043 * 211.44720 * 28 13 12 43 43 H 1.08995 * 108.87044 * 329.98394 * 28 13 12 44 44 H 1.08999 * 109.48244 * 260.63094 * 29 9 7 45 45 H 1.09004 * 109.47842 * 20.65502 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4108 2.0966 1.3965 5 1 1.4939 2.6261 -0.7851 6 1 3.5885 1.4167 -0.6113 7 6 2.0102 -1.2021 -0.0005 8 1 1.5473 -2.0928 -0.3988 9 7 3.2820 -1.2587 0.5041 10 6 4.1729 -2.2776 0.0284 11 6 3.9418 -3.5418 0.8731 12 6 4.5976 -3.4496 2.1871 13 7 4.0970 -2.2695 2.9311 14 6 3.1954 -2.4298 3.9200 15 8 2.8570 -3.5476 4.2590 16 6 2.6201 -1.2512 4.5901 17 6 3.3138 -0.2055 5.1635 18 7 2.4176 0.6590 5.6627 19 1 2.6345 1.4858 6.1213 20 7 1.1241 0.1882 5.4206 21 6 1.1966 -0.9530 4.7739 22 6 0.0552 -1.7835 4.3192 23 6 -1.1143 -1.8620 5.0813 24 6 -2.1506 -2.6512 4.6136 25 6 -1.9975 -3.3310 3.4188 26 7 -0.8815 -3.2383 2.7219 27 6 0.1293 -2.4950 3.1234 28 6 4.5722 -0.9554 2.5995 29 6 3.6975 -0.2573 1.5241 30 1 -0.4850 -0.8373 0.0678 31 1 3.9628 -2.4910 -1.0197 32 1 5.2052 -1.9446 0.1368 33 1 2.8706 -3.6797 1.0199 34 1 4.3405 -4.4039 0.3383 35 1 4.3868 -4.3530 2.7596 36 1 5.6743 -3.3544 2.0470 37 1 4.3881 -0.1017 5.2038 38 1 -1.2063 -1.3213 6.0116 39 1 -3.0691 -2.7353 5.1755 40 1 -2.8039 -3.9480 3.0511 41 1 1.0253 -2.4402 2.5227 42 1 4.5769 -0.3440 3.5019 43 1 5.5917 -1.0340 2.2221 44 1 4.2707 0.5353 1.0430 45 1 2.8125 0.1694 1.9962 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000982226926.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:15 Heat of formation + Delta-G solvation = 120.905298 kcal Electronic energy + Delta-G solvation = -31874.384517 eV Core-core repulsion = 27895.007771 eV Total energy + Delta-G solvation = -3979.376746 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.17315 -39.45335 -39.34422 -37.02783 -34.33490 -33.18211 -32.98151 -31.62542 -31.36712 -30.10966 -29.70466 -27.66824 -25.83136 -23.93231 -23.73909 -23.08795 -22.85657 -21.25790 -20.26326 -19.80416 -19.22427 -17.72868 -17.06301 -16.68516 -16.40949 -15.89157 -15.75097 -15.36682 -15.05639 -14.70437 -14.40987 -14.17870 -13.91221 -13.47736 -13.34754 -13.26939 -13.01868 -12.92716 -12.74202 -12.72594 -12.37345 -11.99482 -11.58608 -11.48526 -11.29346 -10.94688 -10.85693 -10.38894 -10.28366 -10.16009 -9.99627 -9.77637 -9.54152 -9.33471 -9.15785 -9.01831 -8.73206 -8.42484 -8.26549 -8.10618 -6.90965 -6.23211 -3.20768 1.15910 1.67916 1.75117 2.55457 2.75028 3.11887 3.38407 3.52592 3.64328 3.66982 4.28632 4.37487 4.64183 4.67507 4.91498 4.96015 5.06259 5.13346 5.22896 5.29794 5.41615 5.42737 5.46870 5.55084 5.56816 5.62955 5.79330 5.82122 5.85579 5.89608 6.07734 6.17355 6.26649 6.31435 6.36003 6.47481 6.51063 6.55199 6.57375 6.75318 6.90867 7.09215 7.13447 7.16352 7.57676 7.83711 8.16721 8.44527 8.54295 8.59546 9.12105 9.74240 10.22364 11.20180 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009131 B = 0.006468 C = 0.005885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3065.800890 B = 4327.712518 C = 4756.504187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C -0.004 4.004 3 Si 1.045 2.955 4 H -0.300 1.300 5 H -0.302 1.302 6 H -0.287 1.287 7 C -0.349 4.349 8 H 0.069 0.931 9 N -0.595 5.595 10 C 0.163 3.837 11 C -0.170 4.170 12 C 0.131 3.869 13 N -0.582 5.582 14 C 0.599 3.401 15 O -0.541 6.541 16 C -0.258 4.258 17 C 0.090 3.910 18 N -0.465 5.465 19 H 0.442 0.558 20 N -0.278 5.278 21 C 0.178 3.822 22 C -0.075 4.075 23 C -0.048 4.048 24 C -0.188 4.188 25 C 0.106 3.894 26 N -0.475 5.475 27 C 0.172 3.828 28 C 0.090 3.910 29 C 0.109 3.891 30 H 0.267 0.733 31 H 0.051 0.949 32 H 0.033 0.967 33 H 0.071 0.929 34 H 0.058 0.942 35 H 0.081 0.919 36 H 0.062 0.938 37 H 0.188 0.812 38 H 0.133 0.867 39 H 0.134 0.866 40 H 0.153 0.847 41 H 0.164 0.836 42 H 0.069 0.931 43 H 0.069 0.931 44 H 0.033 0.967 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.701 -1.135 11.524 13.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.207 4.207 3 Si 0.877 3.123 4 H -0.229 1.229 5 H -0.230 1.230 6 H -0.214 1.214 7 C -0.477 4.477 8 H 0.086 0.914 9 N -0.318 5.318 10 C 0.035 3.965 11 C -0.211 4.211 12 C 0.009 3.991 13 N -0.313 5.313 14 C 0.387 3.613 15 O -0.419 6.419 16 C -0.273 4.273 17 C -0.059 4.059 18 N -0.171 5.171 19 H 0.286 0.714 20 N -0.099 5.099 21 C 0.009 3.991 22 C -0.080 4.080 23 C -0.075 4.075 24 C -0.207 4.207 25 C -0.051 4.051 26 N -0.183 5.183 27 C 0.013 3.987 28 C -0.037 4.037 29 C -0.018 4.018 30 H 0.078 0.922 31 H 0.069 0.931 32 H 0.051 0.949 33 H 0.090 0.910 34 H 0.076 0.924 35 H 0.099 0.901 36 H 0.080 0.920 37 H 0.205 0.795 38 H 0.151 0.849 39 H 0.152 0.848 40 H 0.170 0.830 41 H 0.181 0.819 42 H 0.087 0.913 43 H 0.087 0.913 44 H 0.050 0.950 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 6.670 0.303 11.333 13.153 hybrid contribution 0.860 -0.909 0.658 1.414 sum 7.530 -0.606 11.991 14.172 Atomic orbital electron populations 1.70801 1.06418 1.29865 1.47665 1.25971 0.96367 1.00362 0.97955 0.84124 0.75087 0.77473 0.75627 1.22875 1.22980 1.21396 1.20153 0.89841 0.96250 1.41494 0.91374 1.43900 1.11839 1.33215 1.42861 1.20323 0.92351 0.87980 0.95886 1.21844 1.02619 1.00410 0.96213 1.20605 0.97020 0.88262 0.93165 1.47243 1.43034 1.07480 1.33580 1.17149 0.77862 0.87307 0.79024 1.90749 1.60332 1.25371 1.65414 1.21223 0.92335 0.99904 1.13860 1.22842 0.96389 0.89732 0.96909 1.45825 1.03515 1.20756 1.46985 0.71410 1.77286 0.98616 1.12424 1.21621 1.21434 0.91160 0.91660 0.94837 1.18697 0.92317 0.99497 0.97453 1.21509 0.91506 0.95654 0.98825 1.21950 0.99870 1.00170 0.98760 1.22881 0.95252 0.96017 0.90989 1.67773 1.00386 1.17714 1.32422 1.23005 0.96823 0.87779 0.91054 1.22018 0.98188 0.84279 0.99173 1.22540 0.97816 0.91901 0.89528 0.92233 0.93071 0.94894 0.90987 0.92390 0.90075 0.91964 0.79507 0.84899 0.84845 0.82955 0.81932 0.91261 0.91270 0.94951 0.91187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.92 13.70 55.49 0.76 -27.16 16 2 C 0.00 -0.11 5.08 -17.43 -0.09 -0.20 16 3 Si 1.04 25.86 24.50 -169.99 -4.17 21.69 16 4 H -0.30 -7.07 6.79 56.52 0.38 -6.69 16 5 H -0.30 -7.76 7.11 56.52 0.40 -7.36 16 6 H -0.29 -6.70 6.66 56.52 0.38 -6.33 16 7 C -0.35 -9.39 9.51 -15.06 -0.14 -9.53 16 8 H 0.07 2.03 8.06 -52.49 -0.42 1.61 16 9 N -0.60 -13.29 2.31 -171.79 -0.40 -13.69 16 10 C 0.16 3.06 5.63 -5.24 -0.03 3.03 16 11 C -0.17 -2.94 5.64 -29.13 -0.16 -3.11 16 12 C 0.13 2.04 5.73 -5.91 -0.03 2.00 16 13 N -0.58 -9.76 2.46 -177.75 -0.44 -10.20 16 14 C 0.60 11.21 5.87 -12.58 -0.07 11.14 16 15 O -0.54 -11.64 16.23 5.27 0.09 -11.55 16 16 C -0.26 -4.49 5.41 -102.95 -0.56 -5.05 16 17 C 0.09 1.14 10.07 -16.64 -0.17 0.97 16 18 N -0.46 -5.82 7.20 30.81 0.22 -5.60 16 19 H 0.44 3.59 8.96 -182.85 -1.64 1.95 16 20 N -0.28 -4.75 12.64 34.58 0.44 -4.31 16 21 C 0.18 3.39 6.96 -80.56 -0.56 2.83 16 22 C -0.08 -1.51 5.85 -104.76 -0.61 -2.12 16 23 C -0.05 -0.80 9.92 -38.93 -0.39 -1.19 16 24 C -0.19 -2.81 10.10 -39.49 -0.40 -3.21 16 25 C 0.11 1.79 11.17 -17.49 -0.20 1.60 16 26 N -0.48 -10.08 10.35 -12.96 -0.13 -10.22 16 27 C 0.17 3.83 10.09 -17.18 -0.17 3.66 16 28 C 0.09 1.36 5.02 -4.40 -0.02 1.34 16 29 C 0.11 2.17 4.58 -1.57 -0.01 2.16 16 30 H 0.27 8.37 8.73 -40.82 -0.36 8.01 16 31 H 0.05 1.01 8.02 -51.93 -0.42 0.59 16 32 H 0.03 0.54 7.59 -51.93 -0.39 0.15 16 33 H 0.07 1.54 7.91 -51.93 -0.41 1.13 16 34 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.08 1.32 7.08 -51.92 -0.37 0.95 16 36 H 0.06 0.79 8.05 -51.93 -0.42 0.37 16 37 H 0.19 1.50 6.92 -52.48 -0.36 1.14 16 38 H 0.13 1.91 8.06 -52.49 -0.42 1.49 16 39 H 0.13 1.47 8.06 -52.49 -0.42 1.04 16 40 H 0.15 2.02 8.06 -52.49 -0.42 1.59 16 41 H 0.16 4.09 6.89 -52.48 -0.36 3.73 16 42 H 0.07 0.87 4.18 -51.93 -0.22 0.65 16 43 H 0.07 0.89 7.72 -51.93 -0.40 0.49 16 44 H 0.03 0.64 5.97 -51.93 -0.31 0.33 16 45 H 0.07 1.61 5.76 -51.93 -0.30 1.31 16 LS Contribution 360.75 15.07 5.44 5.44 Total: -1.00 -35.97 360.75 -8.71 -44.68 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: -6.91 Total: 6.59 kcal Atomic # 6 Polarization: 7.95 SS G_CDS: -3.61 Total: 4.33 kcal Atomic # 7 Polarization: -71.63 SS G_CDS: 0.45 Total: -71.18 kcal Atomic # 8 Polarization: -11.64 SS G_CDS: 0.09 Total: -11.55 kcal Atomic # 14 Polarization: 25.86 SS G_CDS: -4.17 Total: 21.69 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -35.97 -8.71 -44.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982226926.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.586 kcal (2) G-P(sol) polarization free energy of solvation -35.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.681 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds