Wall clock time and date at job start Sat Apr 11 2020 06:20:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86803 * 119.99967 * 2 1 4 4 H 1.48504 * 109.46954 * 85.88633 * 3 2 1 5 5 H 1.48498 * 109.47191 * 325.89072 * 3 2 1 6 6 H 1.48492 * 109.47124 * 205.88829 * 3 2 1 7 7 C 1.38805 * 119.99873 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00598 * 25.17825 * 7 2 1 9 9 N 1.36940 * 119.99792 * 205.18332 * 7 2 1 10 10 C 1.43463 * 118.94005 * 205.55265 * 9 7 2 11 11 C 1.53793 * 107.96217 * 273.61464 * 10 9 7 12 12 C 1.47147 * 111.83486 * 281.66253 * 11 10 9 13 13 N 1.48219 * 110.34276 * 58.30026 * 12 11 10 14 14 C 1.34776 * 119.96725 * 102.50816 * 13 12 11 15 15 O 1.21610 * 120.00548 * 4.69240 * 14 13 12 16 16 C 1.47289 * 119.99477 * 184.68913 * 14 13 12 17 17 C 1.37964 * 126.81197 * 307.40572 * 16 14 13 18 18 N 1.34158 * 107.88782 * 179.97438 * 17 16 14 19 19 H 0.96999 * 125.16162 * 180.02562 * 18 17 16 20 20 N 1.39770 * 109.67635 * 359.97438 * 18 17 16 21 21 C 1.31367 * 109.07503 * 359.74374 * 20 18 17 22 22 C 1.48303 * 126.50696 * 180.27012 * 21 20 18 23 23 C 1.39805 * 120.53740 * 325.13617 * 22 21 20 24 24 C 1.38404 * 118.30455 * 180.02562 * 23 22 21 25 25 C 1.38322 * 119.28966 * 0.02562 * 24 23 22 26 26 N 1.31895 * 121.03411 * 0.02562 * 25 24 23 27 27 C 1.31736 * 121.86114 * 359.65338 * 26 25 24 28 28 C 1.43622 * 120.05788 * 282.48860 * 13 12 11 29 29 C 1.48854 * 118.94208 * 25.28503 * 9 7 2 30 30 H 0.96994 * 119.99892 * 184.63234 * 1 2 3 31 31 H 1.09005 * 109.76349 * 33.22916 * 10 9 7 32 32 H 1.08999 * 109.76487 * 153.94362 * 10 9 7 33 33 H 1.08995 * 109.00881 * 42.26886 * 11 10 9 34 34 H 1.09003 * 109.01115 * 161.13665 * 11 10 9 35 35 H 1.09008 * 109.32260 * 178.56311 * 12 11 10 36 36 H 1.08996 * 109.33121 * 298.20325 * 12 11 10 37 37 H 1.08006 * 126.05257 * 359.93930 * 17 16 14 38 38 H 1.07993 * 120.84597 * 359.97438 * 23 22 21 39 39 H 1.08001 * 120.35943 * 180.02562 * 24 23 22 40 40 H 1.08000 * 119.48619 * 179.97438 * 25 24 23 41 41 H 1.08003 * 119.71161 * 180.31693 * 27 26 25 42 42 H 1.08998 * 108.87043 * 211.44720 * 28 13 12 43 43 H 1.08995 * 108.87044 * 329.98394 * 28 13 12 44 44 H 1.08999 * 109.48244 * 260.63094 * 29 9 7 45 45 H 1.09004 * 109.47842 * 20.65502 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4108 2.0966 1.3965 5 1 1.4939 2.6261 -0.7851 6 1 3.5885 1.4167 -0.6113 7 6 2.0102 -1.2021 -0.0005 8 1 1.5473 -2.0928 -0.3988 9 7 3.2820 -1.2587 0.5041 10 6 4.1729 -2.2776 0.0284 11 6 3.9418 -3.5418 0.8731 12 6 4.5976 -3.4496 2.1871 13 7 4.0970 -2.2695 2.9311 14 6 3.1954 -2.4298 3.9200 15 8 2.8570 -3.5476 4.2590 16 6 2.6201 -1.2512 4.5901 17 6 3.3138 -0.2055 5.1635 18 7 2.4176 0.6590 5.6627 19 1 2.6345 1.4858 6.1213 20 7 1.1241 0.1882 5.4206 21 6 1.1966 -0.9530 4.7739 22 6 0.0552 -1.7835 4.3192 23 6 -1.1143 -1.8620 5.0813 24 6 -2.1506 -2.6512 4.6136 25 6 -1.9975 -3.3310 3.4188 26 7 -0.8815 -3.2383 2.7219 27 6 0.1293 -2.4950 3.1234 28 6 4.5722 -0.9554 2.5995 29 6 3.6975 -0.2573 1.5241 30 1 -0.4850 -0.8373 0.0678 31 1 3.9628 -2.4910 -1.0197 32 1 5.2052 -1.9446 0.1368 33 1 2.8706 -3.6797 1.0199 34 1 4.3405 -4.4039 0.3383 35 1 4.3868 -4.3530 2.7596 36 1 5.6743 -3.3544 2.0470 37 1 4.3881 -0.1017 5.2038 38 1 -1.2063 -1.3213 6.0116 39 1 -3.0691 -2.7353 5.1755 40 1 -2.8039 -3.9480 3.0511 41 1 1.0253 -2.4402 2.5227 42 1 4.5769 -0.3440 3.5019 43 1 5.5917 -1.0340 2.2221 44 1 4.2707 0.5353 1.0430 45 1 2.8125 0.1694 1.9962 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000982226926.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:14 Heat of formation + Delta-G solvation = 92.963466 kcal Electronic energy + Delta-G solvation = -31875.596166 eV Core-core repulsion = 27895.007771 eV Total energy + Delta-G solvation = -3980.588395 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.38829 -40.86289 -40.68906 -38.60065 -35.98855 -34.52815 -34.45393 -33.32000 -32.98300 -31.35850 -31.00697 -29.22177 -27.40054 -25.28929 -25.13055 -24.75523 -24.36576 -22.52273 -21.69268 -21.39476 -20.45684 -19.43783 -18.55750 -18.07100 -17.81385 -17.26900 -17.16308 -16.75864 -16.52627 -16.27757 -15.72860 -15.61662 -15.50802 -15.04447 -14.76847 -14.74963 -14.47081 -14.36183 -14.27943 -14.07266 -13.92765 -13.52204 -13.30223 -12.89051 -12.67538 -12.53331 -12.18315 -11.98614 -11.88738 -11.64229 -11.52849 -11.42164 -11.27001 -10.95929 -10.67371 -10.53125 -10.45459 -10.00111 -9.64053 -9.42310 -8.86360 -8.46498 -5.36693 -0.22156 0.27970 0.65756 1.20755 1.37911 1.54242 1.66604 1.70627 1.83718 2.37879 2.60756 2.86077 3.11076 3.19660 3.52255 3.55279 3.60143 3.83837 3.88904 3.94081 4.07019 4.14308 4.14808 4.21214 4.34136 4.37554 4.43272 4.52520 4.58205 4.64838 4.71379 4.75673 4.84983 4.92397 4.96043 4.99012 5.06055 5.13624 5.17732 5.25159 5.48024 5.69679 5.75830 5.91895 6.23040 6.34717 6.41306 6.54047 6.99744 7.02496 7.24883 7.80533 8.13476 8.93500 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009131 B = 0.006468 C = 0.005885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3065.800890 B = 4327.712518 C = 4756.504187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.063 4.063 3 Si 1.094 2.906 4 H -0.278 1.278 5 H -0.319 1.319 6 H -0.256 1.256 7 C -0.318 4.318 8 H 0.013 0.987 9 N -0.607 5.607 10 C 0.159 3.841 11 C -0.156 4.156 12 C 0.129 3.871 13 N -0.582 5.582 14 C 0.597 3.403 15 O -0.585 6.585 16 C -0.302 4.302 17 C 0.126 3.874 18 N -0.441 5.441 19 H 0.464 0.536 20 N -0.297 5.297 21 C 0.146 3.854 22 C -0.091 4.091 23 C -0.055 4.055 24 C -0.165 4.165 25 C 0.090 3.910 26 N -0.518 5.518 27 C 0.141 3.859 28 C 0.092 3.908 29 C 0.101 3.899 30 H 0.242 0.758 31 H 0.033 0.967 32 H 0.080 0.920 33 H 0.010 0.990 34 H 0.084 0.916 35 H 0.068 0.932 36 H 0.113 0.887 37 H 0.246 0.754 38 H 0.160 0.840 39 H 0.186 0.814 40 H 0.187 0.813 41 H 0.116 0.884 42 H 0.103 0.897 43 H 0.114 0.886 44 H 0.052 0.948 45 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.274 0.922 13.999 17.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.258 4.258 3 Si 0.921 3.079 4 H -0.205 1.205 5 H -0.249 1.249 6 H -0.180 1.180 7 C -0.449 4.449 8 H 0.031 0.969 9 N -0.331 5.331 10 C 0.032 3.968 11 C -0.197 4.197 12 C 0.009 3.991 13 N -0.312 5.312 14 C 0.386 3.614 15 O -0.466 6.466 16 C -0.317 4.317 17 C -0.024 4.024 18 N -0.150 5.150 19 H 0.313 0.687 20 N -0.120 5.120 21 C -0.021 4.021 22 C -0.095 4.095 23 C -0.081 4.081 24 C -0.184 4.184 25 C -0.067 4.067 26 N -0.227 5.227 27 C -0.017 4.017 28 C -0.033 4.033 29 C -0.024 4.024 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.098 0.902 33 H 0.029 0.971 34 H 0.102 0.898 35 H 0.086 0.914 36 H 0.131 0.869 37 H 0.262 0.738 38 H 0.178 0.822 39 H 0.203 0.797 40 H 0.204 0.796 41 H 0.134 0.866 42 H 0.121 0.879 43 H 0.132 0.868 44 H 0.070 0.930 45 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 10.315 2.372 13.825 17.411 hybrid contribution -0.293 -1.667 -0.099 1.696 sum 10.022 0.705 13.726 17.010 Atomic orbital electron populations 1.70938 1.07901 1.28150 1.52200 1.27180 0.96166 1.04083 0.98352 0.83500 0.74915 0.72821 0.76664 1.20515 1.24853 1.18010 1.19807 0.91717 0.93931 1.39400 0.96886 1.43966 1.10566 1.34557 1.43970 1.20492 0.93873 0.87386 0.95006 1.21689 0.99114 1.00996 0.97927 1.20707 0.99378 0.87839 0.91220 1.47371 1.42510 1.08540 1.32774 1.17463 0.77497 0.87198 0.79277 1.90705 1.61589 1.27257 1.67011 1.21302 0.92267 1.01457 1.16679 1.23554 0.98343 0.87171 0.93334 1.45875 1.02227 1.21231 1.45631 0.68730 1.77175 1.01106 1.11848 1.21823 1.21505 0.91861 0.92569 0.96198 1.18923 0.94282 0.99395 0.96875 1.21928 0.90805 0.96013 0.99400 1.22481 1.00926 0.97365 0.97603 1.23534 0.94592 0.96792 0.91752 1.67605 1.01840 1.18787 1.34457 1.22369 0.96193 0.90735 0.92381 1.22139 0.98708 0.83329 0.99120 1.22669 0.97565 0.92062 0.90094 0.94919 0.94855 0.90206 0.97085 0.89808 0.91394 0.86896 0.73794 0.82233 0.79681 0.79590 0.86635 0.87880 0.86787 0.93046 0.94716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -62.76 13.70 21.65 0.30 -62.47 16 2 C -0.06 -3.74 5.08 84.86 0.43 -3.31 16 3 Si 1.09 52.65 24.50 68.60 1.68 54.34 16 4 H -0.28 -12.27 6.79 99.48 0.68 -11.59 16 5 H -0.32 -16.19 7.11 99.48 0.71 -15.48 16 6 H -0.26 -10.84 6.66 99.48 0.66 -10.18 16 7 C -0.32 -18.28 9.51 84.03 0.80 -17.48 16 8 H 0.01 0.88 8.06 -2.91 -0.02 0.86 16 9 N -0.61 -27.20 2.31 -697.41 -1.61 -28.81 16 10 C 0.16 5.83 5.63 87.21 0.49 6.32 16 11 C -0.16 -5.49 5.64 29.04 0.16 -5.33 16 12 C 0.13 3.81 5.73 84.23 0.48 4.29 16 13 N -0.58 -18.51 2.46 -834.54 -2.05 -20.56 16 14 C 0.60 22.54 5.87 86.62 0.51 23.04 16 15 O -0.58 -26.54 16.23 -4.06 -0.07 -26.61 16 16 C -0.30 -10.29 5.41 -18.78 -0.10 -10.39 16 17 C 0.13 2.70 10.07 84.27 0.85 3.55 16 18 N -0.44 -9.54 7.20 -56.42 -0.41 -9.95 16 19 H 0.46 5.47 8.96 -213.53 -1.91 3.55 16 20 N -0.30 -9.84 12.64 -44.52 -0.56 -10.40 16 21 C 0.15 5.69 6.96 44.08 0.31 5.99 16 22 C -0.09 -3.85 5.85 -19.95 -0.12 -3.96 16 23 C -0.05 -1.85 9.92 22.69 0.23 -1.62 16 24 C -0.16 -4.81 10.10 22.33 0.23 -4.59 16 25 C 0.09 3.18 11.17 84.70 0.95 4.12 16 26 N -0.52 -24.25 10.35 -194.91 -2.02 -26.27 16 27 C 0.14 6.97 10.09 84.97 0.86 7.83 16 28 C 0.09 2.37 5.02 87.67 0.44 2.81 16 29 C 0.10 3.79 4.58 86.68 0.40 4.19 16 30 H 0.24 16.77 8.73 -92.71 -0.81 15.96 16 31 H 0.03 1.32 8.02 -2.38 -0.02 1.30 16 32 H 0.08 2.24 7.59 -2.39 -0.02 2.22 16 33 H 0.01 0.49 7.91 -2.39 -0.02 0.47 16 34 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 35 H 0.07 2.21 7.08 -2.38 -0.02 2.19 16 36 H 0.11 2.26 8.05 -2.39 -0.02 2.24 16 37 H 0.25 2.16 6.92 -2.91 -0.02 2.14 16 38 H 0.16 4.41 8.06 -2.91 -0.02 4.39 16 39 H 0.19 3.42 8.06 -2.91 -0.02 3.39 16 40 H 0.19 4.95 8.06 -2.91 -0.02 4.93 16 41 H 0.12 6.63 6.89 -2.91 -0.02 6.61 16 42 H 0.10 1.95 4.18 -2.39 -0.01 1.94 16 43 H 0.11 2.04 7.72 -2.39 -0.02 2.02 16 44 H 0.05 1.77 5.97 -2.39 -0.01 1.75 16 45 H 0.03 1.56 5.76 -2.39 -0.01 1.54 16 Total: -1.00 -93.74 360.75 1.19 -92.56 By element: Atomic # 1 Polarization: 23.69 SS G_CDS: -0.98 Total: 22.71 kcal Atomic # 6 Polarization: 8.56 SS G_CDS: 6.90 Total: 15.47 kcal Atomic # 7 Polarization: -152.11 SS G_CDS: -6.35 Total: -158.46 kcal Atomic # 8 Polarization: -26.54 SS G_CDS: -0.07 Total: -26.61 kcal Atomic # 14 Polarization: 52.65 SS G_CDS: 1.68 Total: 54.34 kcal Total: -93.74 1.19 -92.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982226926.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.520 kcal (2) G-P(sol) polarization free energy of solvation -93.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.556 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds