Wall clock time and date at job start Sat Apr 11 2020 06:20:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 120.00193 * 2 1 4 4 H 1.48499 * 109.47136 * 85.01348 * 3 2 1 5 5 H 1.48503 * 109.46963 * 325.01724 * 3 2 1 6 6 H 1.48493 * 109.47320 * 205.01534 * 3 2 1 7 7 C 1.38816 * 119.99999 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00039 * 196.64499 * 7 2 1 9 9 N 1.36941 * 119.99437 * 16.64440 * 7 2 1 10 10 C 1.43467 * 118.93518 * 203.61742 * 9 7 2 11 11 C 1.53247 * 108.26226 * 273.78261 * 10 9 7 12 12 C 1.47145 * 111.81076 * 281.67809 * 11 10 9 13 13 N 1.48211 * 110.34398 * 58.22810 * 12 11 10 14 14 C 1.34778 * 119.97279 * 102.46166 * 13 12 11 15 15 O 1.21571 * 120.00406 * 174.56947 * 14 13 12 16 16 C 1.47692 * 119.99822 * 354.57037 * 14 13 12 17 17 C 1.39690 * 120.07876 * 123.87890 * 16 14 13 18 18 C 1.37750 * 119.91859 * 179.72339 * 17 16 14 19 19 C 1.39021 * 120.07492 * 0.54515 * 18 17 16 20 20 N 1.39942 * 119.91665 * 179.69921 * 19 18 17 21 21 C 1.36311 * 126.86541 * 0.03229 * 20 19 18 22 22 C 1.34960 * 106.77928 * 179.97438 * 21 20 19 23 23 N 1.33377 * 109.01728 * 359.97438 * 22 21 20 24 24 N 1.28773 * 109.92341 * 359.71021 * 23 22 21 25 25 C 1.39026 * 120.16530 * 359.73033 * 19 18 17 26 26 C 1.37740 * 120.07738 * 359.97438 * 25 19 18 27 27 C 1.43622 * 120.05978 * 282.48614 * 13 12 11 28 28 C 1.48853 * 118.94291 * 23.88864 * 9 7 2 29 29 H 0.96994 * 120.00202 * 0.02562 * 1 2 3 30 30 H 1.09003 * 109.76557 * 33.24747 * 10 9 7 31 31 H 1.08996 * 109.76216 * 154.01706 * 10 9 7 32 32 H 1.09003 * 109.07688 * 161.04337 * 11 10 9 33 33 H 1.08997 * 108.90392 * 42.19936 * 11 10 9 34 34 H 1.08996 * 109.32598 * 297.96208 * 12 11 10 35 35 H 1.08994 * 109.17791 * 178.40360 * 12 11 10 36 36 H 1.07995 * 120.04027 * 359.97438 * 17 16 14 37 37 H 1.07994 * 119.95776 * 180.29159 * 18 17 16 38 38 H 1.08003 * 126.60925 * 359.95278 * 21 20 19 39 39 H 1.08004 * 125.49337 * 179.97438 * 22 21 20 40 40 H 1.08004 * 119.96312 * 180.02562 * 25 19 18 41 41 H 1.07997 * 120.03870 * 179.97438 * 26 25 19 42 42 H 1.09002 * 108.87061 * 329.88769 * 27 13 12 43 43 H 1.08995 * 108.87632 * 211.44852 * 27 13 12 44 44 H 1.09002 * 109.47947 * 260.60084 * 28 9 7 45 45 H 1.09002 * 109.48302 * 20.62307 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3924 2.1072 1.3948 5 1 1.5043 2.6200 -0.8027 6 1 3.5964 1.4120 -0.5920 7 6 2.0103 -1.2022 0.0005 8 1 3.0563 -1.2217 0.2685 9 7 1.3685 -2.3634 -0.3387 10 6 1.8937 -3.6111 0.1364 11 6 2.9637 -4.0888 -0.8513 12 6 2.3675 -4.6926 -2.0534 13 7 1.4774 -3.7203 -2.7310 14 6 1.9000 -3.0788 -3.8384 15 8 1.1375 -2.3567 -4.4509 16 6 3.2894 -3.2531 -4.3079 17 6 3.5383 -3.6998 -5.6078 18 6 4.8355 -3.8558 -6.0441 19 6 5.8962 -3.5801 -5.1887 20 7 7.2127 -3.7457 -5.6334 21 6 7.6124 -4.1657 -6.8671 22 6 8.9619 -4.1778 -6.8562 23 7 9.3904 -3.7788 -5.6578 24 7 8.3851 -3.5054 -4.9009 25 6 5.6522 -3.1409 -3.8924 26 6 4.3577 -2.9768 -3.4513 27 6 0.1651 -3.4607 -2.2082 28 6 0.1519 -2.2909 -1.1933 29 1 -0.4850 0.8400 -0.0004 30 1 2.3429 -3.4714 1.1197 31 1 1.0935 -4.3485 0.1974 32 1 3.5975 -4.8273 -0.3602 33 1 3.5758 -3.2372 -1.1480 34 1 1.7899 -5.5715 -1.7671 35 1 3.1628 -4.9904 -2.7365 36 1 2.7147 -3.9187 -6.2713 37 1 5.0287 -4.1965 -7.0505 38 1 6.9725 -4.4369 -7.6938 39 1 9.5931 -4.4644 -7.6843 40 1 6.4787 -2.9273 -3.2308 41 1 4.1689 -2.6360 -2.4440 42 1 -0.2019 -4.3603 -1.7141 43 1 -0.5021 -3.2177 -3.0351 44 1 -0.7372 -2.3631 -0.5669 45 1 0.1416 -1.3429 -1.7313 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989462525.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:18 Heat of formation + Delta-G solvation = 142.844005 kcal Electronic energy + Delta-G solvation = -30045.808815 eV Core-core repulsion = 26067.383403 eV Total energy + Delta-G solvation = -3978.425412 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.47141 -40.45373 -38.77704 -37.05684 -34.78208 -34.32258 -32.46283 -31.72445 -31.26796 -30.72198 -29.97126 -27.70438 -25.52751 -25.08143 -23.78296 -23.60789 -22.49599 -21.74779 -21.29545 -19.83220 -19.04043 -18.82820 -17.29322 -16.77162 -16.16149 -16.07352 -15.74202 -15.51762 -15.17350 -14.79490 -14.56055 -14.13803 -13.98760 -13.87814 -13.70883 -13.46197 -13.25259 -13.16269 -12.79539 -12.55147 -12.31460 -12.18162 -11.70415 -11.53116 -11.38956 -11.32814 -11.16922 -10.96409 -10.76113 -10.61140 -10.32294 -10.20674 -9.83253 -9.78784 -9.73419 -9.53394 -9.34627 -8.64556 -8.46339 -8.13864 -6.74466 -5.80144 -3.21061 0.13668 1.03696 1.47121 1.82012 2.23294 2.89933 3.35340 3.37626 3.45979 3.46745 3.50994 4.08296 4.13463 4.47700 4.49595 4.52176 4.64237 4.72981 4.92665 4.98526 5.09848 5.21235 5.30602 5.37945 5.46287 5.53633 5.61013 5.70644 5.72498 5.78014 5.89941 6.01275 6.08872 6.11489 6.17653 6.23867 6.33397 6.38126 6.39600 6.60702 6.72404 6.90774 6.92882 7.38329 7.57852 7.74799 7.81821 7.81912 8.42138 8.51081 9.18986 9.87835 10.32253 11.28055 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013229 B = 0.003384 C = 0.003077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2116.121385 B = 8272.594856 C = 9098.612657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.008 3.992 3 Si 0.896 3.104 4 H -0.288 1.288 5 H -0.289 1.289 6 H -0.280 1.280 7 C -0.260 4.260 8 H 0.065 0.935 9 N -0.591 5.591 10 C 0.163 3.837 11 C -0.181 4.181 12 C 0.121 3.879 13 N -0.575 5.575 14 C 0.558 3.442 15 O -0.535 6.535 16 C -0.105 4.105 17 C -0.057 4.057 18 C -0.132 4.132 19 C 0.143 3.857 20 N -0.313 5.313 21 C 0.021 3.979 22 C -0.075 4.075 23 N -0.235 5.235 24 N -0.060 5.060 25 C -0.108 4.108 26 C -0.065 4.065 27 C 0.087 3.913 28 C 0.166 3.834 29 H 0.254 0.746 30 H 0.046 0.954 31 H 0.034 0.966 32 H 0.060 0.940 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.141 0.859 37 H 0.136 0.864 38 H 0.196 0.804 39 H 0.190 0.810 40 H 0.145 0.855 41 H 0.157 0.843 42 H 0.058 0.942 43 H 0.074 0.926 44 H 0.041 0.959 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.274 -13.875 -12.931 21.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.191 4.191 3 Si 0.726 3.274 4 H -0.215 1.215 5 H -0.215 1.215 6 H -0.205 1.205 7 C -0.390 4.390 8 H 0.083 0.917 9 N -0.312 5.312 10 C 0.034 3.966 11 C -0.222 4.222 12 C -0.002 4.002 13 N -0.305 5.305 14 C 0.345 3.655 15 O -0.412 6.412 16 C -0.109 4.109 17 C -0.076 4.076 18 C -0.153 4.153 19 C 0.050 3.950 20 N -0.095 5.095 21 C -0.129 4.129 22 C -0.230 4.230 23 N -0.104 5.104 24 N -0.038 5.038 25 C -0.128 4.128 26 C -0.083 4.083 27 C -0.037 4.037 28 C 0.041 3.959 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.052 0.948 32 H 0.078 0.922 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.159 0.841 37 H 0.154 0.846 38 H 0.213 0.787 39 H 0.207 0.793 40 H 0.163 0.837 41 H 0.174 0.826 42 H 0.077 0.923 43 H 0.092 0.908 44 H 0.059 0.941 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 9.345 -12.925 -11.886 19.891 hybrid contribution 0.044 0.648 -0.969 1.166 sum 9.389 -12.277 -12.855 20.103 Atomic orbital electron populations 1.70016 1.05217 1.25504 1.53940 1.24936 0.95226 0.98260 1.00698 0.86379 0.79332 0.84165 0.77514 1.21496 1.21530 1.20498 1.19114 0.92711 0.85180 1.41974 0.91723 1.43694 1.30295 1.01397 1.55853 1.20134 0.93519 0.88559 0.94416 1.22062 1.01354 1.00821 0.97924 1.20788 0.93442 0.90990 0.94935 1.47324 1.16511 1.41264 1.25421 1.18088 0.86394 0.80189 0.80801 1.90792 1.55408 1.38128 1.56915 1.20206 0.94381 1.01412 0.94887 1.20969 0.96035 0.96270 0.94331 1.20710 0.91109 1.03907 0.99535 1.17712 0.79208 1.02916 0.95124 1.48043 1.06726 1.44431 1.10271 1.23578 0.97417 1.02001 0.89926 1.23257 0.92746 1.09493 0.97505 1.74366 1.22673 1.10358 1.03021 1.82182 0.84182 1.21362 1.16045 1.20902 0.98186 0.99968 0.93753 1.21729 0.90350 0.95434 1.00803 1.22071 0.82773 1.00360 0.98518 1.21883 0.88665 0.95587 0.89782 0.93616 0.93535 0.94762 0.92172 0.90945 0.91296 0.91217 0.84107 0.84630 0.78746 0.79327 0.83714 0.82560 0.92312 0.90805 0.94096 0.90273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.88 10.95 55.49 0.61 -25.27 16 2 C 0.01 0.21 4.90 -17.43 -0.09 0.12 16 3 Si 0.90 21.95 29.59 -169.99 -5.03 16.92 16 4 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 7 C -0.26 -6.82 9.27 -15.06 -0.14 -6.96 16 8 H 0.07 1.67 7.88 -52.49 -0.41 1.25 16 9 N -0.59 -13.67 2.55 -172.34 -0.44 -14.11 16 10 C 0.16 3.02 5.59 -5.52 -0.03 2.99 16 11 C -0.18 -2.71 5.47 -29.42 -0.16 -2.87 16 12 C 0.12 1.63 5.06 -5.91 -0.03 1.60 16 13 N -0.57 -9.67 2.46 -177.83 -0.44 -10.11 16 14 C 0.56 10.02 7.11 -12.40 -0.09 9.93 16 15 O -0.53 -11.58 16.60 5.30 0.09 -11.50 16 16 C -0.10 -1.51 4.42 -104.95 -0.46 -1.98 16 17 C -0.06 -0.64 9.76 -39.22 -0.38 -1.03 16 18 C -0.13 -1.24 9.46 -39.47 -0.37 -1.62 16 19 C 0.14 1.62 6.70 -83.57 -0.56 1.06 16 20 N -0.31 -3.53 3.85 -10.50 -0.04 -3.57 16 21 C 0.02 0.16 10.92 -16.73 -0.18 -0.02 16 22 C -0.07 -0.64 11.86 -18.05 -0.21 -0.86 16 23 N -0.23 -2.97 12.33 30.09 0.37 -2.60 16 24 N -0.06 -0.82 13.15 60.35 0.79 -0.02 16 25 C -0.11 -1.35 9.66 -39.47 -0.38 -1.74 16 26 C -0.06 -0.90 7.92 -39.22 -0.31 -1.21 16 27 C 0.09 1.60 5.30 -4.58 -0.02 1.57 16 28 C 0.17 3.83 5.19 -1.75 -0.01 3.82 16 29 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 30 H 0.05 0.89 8.02 -51.93 -0.42 0.48 16 31 H 0.03 0.59 7.58 -51.93 -0.39 0.20 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.07 1.21 4.80 -51.93 -0.25 0.97 16 34 H 0.07 0.81 8.05 -51.93 -0.42 0.40 16 35 H 0.07 0.83 6.00 -51.93 -0.31 0.52 16 36 H 0.14 1.40 8.06 -52.49 -0.42 0.98 16 37 H 0.14 0.80 6.82 -52.49 -0.36 0.44 16 38 H 0.20 0.65 7.16 -52.48 -0.38 0.27 16 39 H 0.19 0.89 8.06 -52.48 -0.42 0.47 16 40 H 0.15 1.78 7.72 -52.48 -0.41 1.38 16 41 H 0.16 2.42 5.03 -52.49 -0.26 2.16 16 42 H 0.06 0.93 7.73 -51.93 -0.40 0.53 16 43 H 0.07 1.38 7.30 -51.93 -0.38 1.00 16 44 H 0.04 1.00 8.01 -51.93 -0.42 0.59 16 45 H 0.08 2.15 6.48 -51.93 -0.34 1.82 16 LS Contribution 362.57 15.07 5.46 5.46 Total: -1.00 -33.62 362.57 -7.60 -41.22 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: -5.54 Total: 0.76 kcal Atomic # 6 Polarization: 6.25 SS G_CDS: -3.44 Total: 2.82 kcal Atomic # 7 Polarization: -56.54 SS G_CDS: 0.86 Total: -55.68 kcal Atomic # 8 Polarization: -11.58 SS G_CDS: 0.09 Total: -11.50 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.03 Total: 16.92 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.62 -7.60 -41.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989462525.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.064 kcal (2) G-P(sol) polarization free energy of solvation -33.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 150.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 142.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds