Wall clock time and date at job start Sat Apr 11 2020 06:20:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 120.00193 * 2 1 4 4 H 1.48499 * 109.47136 * 85.01348 * 3 2 1 5 5 H 1.48503 * 109.46963 * 325.01724 * 3 2 1 6 6 H 1.48493 * 109.47320 * 205.01534 * 3 2 1 7 7 C 1.38816 * 119.99999 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00039 * 196.64499 * 7 2 1 9 9 N 1.36941 * 119.99437 * 16.64440 * 7 2 1 10 10 C 1.43467 * 118.93518 * 203.61742 * 9 7 2 11 11 C 1.53247 * 108.26226 * 273.78261 * 10 9 7 12 12 C 1.47145 * 111.81076 * 281.67809 * 11 10 9 13 13 N 1.48211 * 110.34398 * 58.22810 * 12 11 10 14 14 C 1.34778 * 119.97279 * 102.46166 * 13 12 11 15 15 O 1.21571 * 120.00406 * 174.56947 * 14 13 12 16 16 C 1.47692 * 119.99822 * 354.57037 * 14 13 12 17 17 C 1.39690 * 120.07876 * 123.87890 * 16 14 13 18 18 C 1.37750 * 119.91859 * 179.72339 * 17 16 14 19 19 C 1.39021 * 120.07492 * 0.54515 * 18 17 16 20 20 N 1.39942 * 119.91665 * 179.69921 * 19 18 17 21 21 C 1.36311 * 126.86541 * 0.03229 * 20 19 18 22 22 C 1.34960 * 106.77928 * 179.97438 * 21 20 19 23 23 N 1.33377 * 109.01728 * 359.97438 * 22 21 20 24 24 N 1.28773 * 109.92341 * 359.71021 * 23 22 21 25 25 C 1.39026 * 120.16530 * 359.73033 * 19 18 17 26 26 C 1.37740 * 120.07738 * 359.97438 * 25 19 18 27 27 C 1.43622 * 120.05978 * 282.48614 * 13 12 11 28 28 C 1.48853 * 118.94291 * 23.88864 * 9 7 2 29 29 H 0.96994 * 120.00202 * 0.02562 * 1 2 3 30 30 H 1.09003 * 109.76557 * 33.24747 * 10 9 7 31 31 H 1.08996 * 109.76216 * 154.01706 * 10 9 7 32 32 H 1.09003 * 109.07688 * 161.04337 * 11 10 9 33 33 H 1.08997 * 108.90392 * 42.19936 * 11 10 9 34 34 H 1.08996 * 109.32598 * 297.96208 * 12 11 10 35 35 H 1.08994 * 109.17791 * 178.40360 * 12 11 10 36 36 H 1.07995 * 120.04027 * 359.97438 * 17 16 14 37 37 H 1.07994 * 119.95776 * 180.29159 * 18 17 16 38 38 H 1.08003 * 126.60925 * 359.95278 * 21 20 19 39 39 H 1.08004 * 125.49337 * 179.97438 * 22 21 20 40 40 H 1.08004 * 119.96312 * 180.02562 * 25 19 18 41 41 H 1.07997 * 120.03870 * 179.97438 * 26 25 19 42 42 H 1.09002 * 108.87061 * 329.88769 * 27 13 12 43 43 H 1.08995 * 108.87632 * 211.44852 * 27 13 12 44 44 H 1.09002 * 109.47947 * 260.60084 * 28 9 7 45 45 H 1.09002 * 109.48302 * 20.62307 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3924 2.1072 1.3948 5 1 1.5043 2.6200 -0.8027 6 1 3.5964 1.4120 -0.5920 7 6 2.0103 -1.2022 0.0005 8 1 3.0563 -1.2217 0.2685 9 7 1.3685 -2.3634 -0.3387 10 6 1.8937 -3.6111 0.1364 11 6 2.9637 -4.0888 -0.8513 12 6 2.3675 -4.6926 -2.0534 13 7 1.4774 -3.7203 -2.7310 14 6 1.9000 -3.0788 -3.8384 15 8 1.1375 -2.3567 -4.4509 16 6 3.2894 -3.2531 -4.3079 17 6 3.5383 -3.6998 -5.6078 18 6 4.8355 -3.8558 -6.0441 19 6 5.8962 -3.5801 -5.1887 20 7 7.2127 -3.7457 -5.6334 21 6 7.6124 -4.1657 -6.8671 22 6 8.9619 -4.1778 -6.8562 23 7 9.3904 -3.7788 -5.6578 24 7 8.3851 -3.5054 -4.9009 25 6 5.6522 -3.1409 -3.8924 26 6 4.3577 -2.9768 -3.4513 27 6 0.1651 -3.4607 -2.2082 28 6 0.1519 -2.2909 -1.1933 29 1 -0.4850 0.8400 -0.0004 30 1 2.3429 -3.4714 1.1197 31 1 1.0935 -4.3485 0.1974 32 1 3.5975 -4.8273 -0.3602 33 1 3.5758 -3.2372 -1.1480 34 1 1.7899 -5.5715 -1.7671 35 1 3.1628 -4.9904 -2.7365 36 1 2.7147 -3.9187 -6.2713 37 1 5.0287 -4.1965 -7.0505 38 1 6.9725 -4.4369 -7.6938 39 1 9.5931 -4.4644 -7.6843 40 1 6.4787 -2.9273 -3.2308 41 1 4.1689 -2.6360 -2.4440 42 1 -0.2019 -4.3603 -1.7141 43 1 -0.5021 -3.2177 -3.0351 44 1 -0.7372 -2.3631 -0.5669 45 1 0.1416 -1.3429 -1.7313 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989462525.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:17 Heat of formation + Delta-G solvation = 121.261765 kcal Electronic energy + Delta-G solvation = -30046.744691 eV Core-core repulsion = 26067.383403 eV Total energy + Delta-G solvation = -3979.361289 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.21904 -41.66818 -39.86198 -38.58360 -36.15800 -35.51848 -33.98350 -32.94581 -32.55254 -31.63795 -31.00305 -29.26161 -27.12454 -26.22903 -25.22925 -24.60015 -23.73216 -22.68382 -22.14679 -21.45358 -20.29018 -19.63806 -18.79286 -18.33561 -17.55713 -16.96557 -16.87915 -16.68471 -16.32360 -15.86864 -15.71939 -15.56525 -15.42656 -15.00596 -14.90613 -14.70727 -14.56627 -14.24425 -14.05802 -13.85228 -13.76957 -13.34971 -13.09780 -12.96464 -12.84895 -12.44200 -12.33676 -12.32388 -12.17271 -12.12145 -12.06899 -11.76503 -11.69964 -11.32961 -10.96654 -10.51418 -10.43194 -10.23893 -9.63133 -9.51765 -8.68728 -7.87585 -5.28379 -0.72493 0.14792 0.62169 1.08019 1.37681 1.41791 1.48216 1.55598 1.63986 2.11787 2.48156 2.52028 3.27426 3.29835 3.37451 3.54932 3.69701 3.72500 3.89393 4.01638 4.07113 4.14099 4.24662 4.28013 4.31014 4.38359 4.50852 4.53154 4.58547 4.78789 4.82090 4.84776 4.90921 4.95348 5.01574 5.07867 5.18490 5.26659 5.27448 5.29849 5.38894 5.58023 5.59488 5.70469 5.80175 5.83606 6.37928 6.43288 7.07245 7.13803 7.17249 7.94326 8.34408 9.17809 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013229 B = 0.003384 C = 0.003077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2116.121385 B = 8272.594856 C = 9098.612657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.050 4.050 3 Si 0.948 3.052 4 H -0.283 1.283 5 H -0.300 1.300 6 H -0.274 1.274 7 C -0.252 4.252 8 H 0.066 0.934 9 N -0.603 5.603 10 C 0.154 3.846 11 C -0.168 4.168 12 C 0.119 3.881 13 N -0.576 5.576 14 C 0.552 3.448 15 O -0.584 6.584 16 C -0.125 4.125 17 C -0.049 4.049 18 C -0.108 4.108 19 C 0.146 3.854 20 N -0.323 5.323 21 C 0.041 3.959 22 C -0.079 4.079 23 N -0.265 5.265 24 N -0.114 5.114 25 C -0.115 4.115 26 C -0.070 4.070 27 C 0.101 3.899 28 C 0.177 3.823 29 H 0.246 0.754 30 H 0.038 0.962 31 H 0.053 0.947 32 H 0.096 0.904 33 H 0.052 0.948 34 H 0.099 0.901 35 H 0.093 0.907 36 H 0.158 0.842 37 H 0.185 0.815 38 H 0.248 0.752 39 H 0.226 0.774 40 H 0.138 0.862 41 H 0.134 0.866 42 H 0.093 0.907 43 H 0.065 0.935 44 H 0.017 0.983 45 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.201 -16.945 -15.679 25.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.245 4.245 3 Si 0.777 3.223 4 H -0.210 1.210 5 H -0.227 1.227 6 H -0.199 1.199 7 C -0.383 4.383 8 H 0.084 0.916 9 N -0.325 5.325 10 C 0.027 3.973 11 C -0.209 4.209 12 C -0.002 4.002 13 N -0.305 5.305 14 C 0.341 3.659 15 O -0.466 6.466 16 C -0.128 4.128 17 C -0.068 4.068 18 C -0.128 4.128 19 C 0.054 3.946 20 N -0.105 5.105 21 C -0.109 4.109 22 C -0.235 4.235 23 N -0.133 5.133 24 N -0.090 5.090 25 C -0.136 4.136 26 C -0.089 4.089 27 C -0.024 4.024 28 C 0.051 3.949 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.071 0.929 32 H 0.114 0.886 33 H 0.071 0.929 34 H 0.117 0.883 35 H 0.111 0.889 36 H 0.176 0.824 37 H 0.203 0.797 38 H 0.264 0.736 39 H 0.242 0.758 40 H 0.155 0.845 41 H 0.151 0.849 42 H 0.111 0.889 43 H 0.084 0.916 44 H 0.035 0.965 45 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 11.339 -16.049 -14.588 24.474 hybrid contribution -0.439 1.498 -0.192 1.572 sum 10.900 -14.551 -14.780 23.431 Atomic orbital electron populations 1.70162 1.06320 1.25271 1.56283 1.25566 0.95894 1.00907 1.02127 0.85547 0.78274 0.81102 0.77359 1.20973 1.22665 1.19933 1.19408 0.92813 0.86426 1.39644 0.91625 1.43878 1.30103 1.02208 1.56333 1.20390 0.94896 0.87026 0.94945 1.21860 1.00129 1.01136 0.97746 1.21033 0.93973 0.90734 0.94417 1.47487 1.16322 1.41459 1.25259 1.18723 0.87491 0.79090 0.80569 1.90756 1.57172 1.40116 1.58529 1.19992 0.92038 1.04216 0.96604 1.21188 0.97556 0.95143 0.92937 1.21100 0.89225 1.01510 1.00990 1.17849 0.80022 1.01992 0.94785 1.48144 1.06126 1.44806 1.11415 1.24525 0.97846 0.99083 0.89469 1.24016 0.93912 1.08477 0.97108 1.74338 1.23193 1.11020 1.04787 1.82195 0.85139 1.24249 1.17458 1.20806 0.97217 1.00675 0.94856 1.21403 0.90921 0.96596 0.99974 1.21724 0.84055 0.99548 0.97086 1.21537 0.87933 0.95382 0.90029 0.94519 0.94387 0.92865 0.88618 0.92937 0.88304 0.88890 0.82414 0.79738 0.73584 0.75769 0.84452 0.84871 0.88909 0.91645 0.96473 0.95354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.43 10.95 21.65 0.24 -56.19 16 2 C -0.05 -2.85 4.90 84.86 0.42 -2.43 16 3 Si 0.95 46.92 29.59 68.60 2.03 48.95 16 4 H -0.28 -13.64 7.11 99.48 0.71 -12.93 16 5 H -0.30 -15.23 7.11 99.48 0.71 -14.52 16 6 H -0.27 -13.14 7.11 99.48 0.71 -12.43 16 7 C -0.25 -13.64 9.27 84.03 0.78 -12.86 16 8 H 0.07 3.47 7.88 -2.91 -0.02 3.44 16 9 N -0.60 -28.52 2.55 -699.16 -1.78 -30.30 16 10 C 0.15 5.59 5.59 87.02 0.49 6.07 16 11 C -0.17 -4.73 5.47 28.86 0.16 -4.57 16 12 C 0.12 2.89 5.06 84.23 0.43 3.32 16 13 N -0.58 -18.91 2.46 -834.81 -2.05 -20.96 16 14 C 0.55 19.79 7.11 86.74 0.62 20.40 16 15 O -0.58 -26.04 16.60 -3.94 -0.07 -26.11 16 16 C -0.12 -3.44 4.42 -20.08 -0.09 -3.53 16 17 C -0.05 -0.95 9.76 22.51 0.22 -0.73 16 18 C -0.11 -1.52 9.46 22.34 0.21 -1.30 16 19 C 0.15 2.87 6.70 38.22 0.26 3.12 16 20 N -0.32 -6.29 3.85 -187.13 -0.72 -7.01 16 21 C 0.04 0.43 10.92 83.24 0.91 1.34 16 22 C -0.08 -1.07 11.86 83.70 0.99 -0.08 16 23 N -0.27 -6.30 12.33 -58.72 -0.72 -7.02 16 24 N -0.11 -2.99 13.15 37.02 0.49 -2.50 16 25 C -0.12 -2.79 9.66 22.34 0.22 -2.58 16 26 C -0.07 -1.92 7.92 22.50 0.18 -1.74 16 27 C 0.10 3.70 5.30 87.55 0.46 4.16 16 28 C 0.18 8.52 5.19 86.56 0.45 8.97 16 29 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 30 H 0.04 1.43 8.02 -2.39 -0.02 1.41 16 31 H 0.05 1.73 7.58 -2.39 -0.02 1.71 16 32 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 33 H 0.05 1.74 4.80 -2.39 -0.01 1.73 16 34 H 0.10 1.88 8.05 -2.39 -0.02 1.86 16 35 H 0.09 1.91 6.00 -2.39 -0.01 1.90 16 36 H 0.16 2.55 8.06 -2.91 -0.02 2.53 16 37 H 0.19 0.76 6.82 -2.91 -0.02 0.74 16 38 H 0.25 -0.28 7.16 -2.91 -0.02 -0.30 16 39 H 0.23 1.06 8.06 -2.91 -0.02 1.04 16 40 H 0.14 3.46 7.72 -2.91 -0.02 3.44 16 41 H 0.13 4.26 5.03 -2.91 -0.01 4.24 16 42 H 0.09 2.76 7.73 -2.39 -0.02 2.74 16 43 H 0.07 2.51 7.30 -2.39 -0.02 2.49 16 44 H 0.02 0.89 8.01 -2.39 -0.02 0.87 16 45 H 0.03 1.63 6.48 -2.39 -0.02 1.62 16 Total: -1.00 -81.23 362.57 5.13 -76.10 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: 1.03 Total: 7.47 kcal Atomic # 6 Polarization: 10.89 SS G_CDS: 6.69 Total: 17.58 kcal Atomic # 7 Polarization: -119.44 SS G_CDS: -4.56 Total: -123.99 kcal Atomic # 8 Polarization: -26.04 SS G_CDS: -0.07 Total: -26.11 kcal Atomic # 14 Polarization: 46.92 SS G_CDS: 2.03 Total: 48.95 kcal Total: -81.23 5.13 -76.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989462525.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 197.364 kcal (2) G-P(sol) polarization free energy of solvation -81.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.102 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds