Wall clock time and date at job start Sat Apr 11 2020 06:20:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86800 * 120.00006 * 2 1 4 4 H 1.48496 * 109.47255 * 275.29024 * 3 2 1 5 5 H 1.48498 * 109.46939 * 35.29113 * 3 2 1 6 6 H 1.48501 * 109.46891 * 155.28789 * 3 2 1 7 7 C 1.38819 * 120.00046 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99534 * 338.65397 * 7 2 1 9 9 N 1.36934 * 119.99974 * 158.66069 * 7 2 1 10 10 C 1.43471 * 118.93835 * 320.96646 * 9 7 2 11 11 C 1.53504 * 107.88759 * 273.56082 * 10 9 7 12 12 C 1.47145 * 112.03511 * 281.58606 * 11 10 9 13 13 N 1.48210 * 110.19492 * 58.36230 * 12 11 10 14 14 C 1.34772 * 119.96593 * 102.58811 * 13 12 11 15 15 O 1.21572 * 120.00370 * 356.00878 * 14 13 12 16 16 C 1.47766 * 120.00096 * 176.00610 * 14 13 12 17 17 C 1.40602 * 126.04745 * 186.27453 * 16 14 13 18 18 N 1.31239 * 106.62629 * 179.82983 * 17 16 14 19 19 N 1.40110 * 107.17933 * 0.42703 * 18 17 16 20 20 C 1.40136 * 125.57090 * 179.75198 * 19 18 17 21 21 C 1.38855 * 120.07112 * 179.68194 * 20 19 18 22 22 C 1.38111 * 119.93384 * 179.76818 * 21 20 19 23 23 C 1.38289 * 120.06719 * 0.49007 * 22 21 20 24 24 C 1.38279 * 120.13519 * 359.78506 * 23 22 21 25 25 C 1.38112 * 120.07163 * 359.96053 * 24 23 22 26 26 N 1.28707 * 108.86223 * 359.71911 * 19 18 17 27 27 C 1.43616 * 120.06323 * 282.55900 * 13 12 11 28 28 C 1.48853 * 118.94172 * 140.94731 * 9 7 2 29 29 H 0.96995 * 119.99461 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.76384 * 33.22581 * 10 9 7 31 31 H 1.09000 * 109.75845 * 153.94723 * 10 9 7 32 32 H 1.09004 * 108.78712 * 161.00635 * 11 10 9 33 33 H 1.08997 * 109.03614 * 42.33640 * 11 10 9 34 34 H 1.09000 * 109.31810 * 298.18625 * 12 11 10 35 35 H 1.08994 * 109.32482 * 178.54664 * 12 11 10 36 36 H 1.07998 * 126.68069 * 0.02562 * 17 16 14 37 37 H 1.08008 * 120.03404 * 0.02562 * 21 20 19 38 38 H 1.07999 * 119.96760 * 180.25108 * 22 21 20 39 39 H 1.08002 * 119.93048 * 179.76092 * 23 22 21 40 40 H 1.08001 * 119.96714 * 179.97438 * 24 23 22 41 41 H 1.08000 * 120.03437 * 180.02562 * 25 24 23 42 42 H 1.09007 * 108.87693 * 211.46656 * 27 13 12 43 43 H 1.08997 * 108.87826 * 329.90616 * 27 13 12 44 44 H 1.09002 * 109.47790 * 20.65962 * 28 9 7 45 45 H 1.08990 * 109.49305 * 260.63186 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3860 2.1110 -1.3941 5 1 1.5080 2.6178 0.8089 6 1 3.5992 1.4104 0.5853 7 6 2.0103 -1.2022 -0.0005 8 1 1.5258 -2.1055 0.3395 9 7 3.3093 -1.2426 -0.4321 10 6 3.6896 -0.4480 -1.5645 11 6 3.3999 -1.2642 -2.8319 12 6 4.4340 -2.2806 -3.0823 13 7 4.5367 -3.2019 -1.9258 14 6 3.9845 -4.4295 -1.9920 15 8 3.3406 -4.7545 -2.9707 16 6 4.1616 -5.3805 -0.8751 17 6 3.7513 -6.7252 -0.8604 18 7 4.0985 -7.2111 0.3082 19 7 4.7127 -6.1735 1.0219 20 6 5.2268 -6.2711 2.3218 21 6 5.8202 -5.1674 2.9200 22 6 6.3217 -5.2655 4.2031 23 6 6.2424 -6.4641 4.8883 24 6 5.6572 -7.5665 4.2932 25 6 5.1491 -7.4734 3.0123 26 7 4.7281 -5.1161 0.2882 27 6 5.2245 -2.7878 -0.7350 28 6 4.2812 -2.1093 0.2890 29 1 -0.4849 0.8400 0.0004 30 1 3.1101 0.4750 -1.5784 31 1 4.7530 -0.2148 -1.5105 32 1 3.3555 -0.5857 -3.6838 33 1 2.4348 -1.7590 -2.7232 34 1 5.3939 -1.7879 -3.2374 35 1 4.1722 -2.8493 -3.9745 36 1 3.2510 -7.2558 -1.6570 37 1 5.8858 -4.2320 2.3840 38 1 6.7797 -4.4063 4.6705 39 1 6.6388 -6.5393 5.8902 40 1 5.5971 -8.5014 4.8306 41 1 4.6918 -8.3347 2.5482 42 1 5.6805 -3.6616 -0.2693 43 1 6.0117 -2.0854 -1.0087 44 1 3.7415 -2.8736 0.8481 45 1 4.8687 -1.5021 0.9776 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989636737.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:21 Heat of formation + Delta-G solvation = 163.392334 kcal Electronic energy + Delta-G solvation = -30439.697831 eV Core-core repulsion = 26462.163461 eV Total energy + Delta-G solvation = -3977.534370 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.75142 -39.78498 -39.25637 -37.17898 -34.53251 -33.99132 -33.02784 -31.96367 -31.50575 -31.18317 -29.62916 -27.86919 -25.98926 -24.80144 -23.78125 -23.63234 -22.65556 -21.51073 -21.32541 -20.08865 -19.19470 -18.30835 -16.91963 -16.62664 -16.54322 -16.38512 -15.93598 -15.45346 -15.27922 -14.97233 -14.66221 -14.31384 -14.25003 -13.79929 -13.68821 -13.32012 -13.09696 -13.06137 -12.77546 -12.65906 -12.20856 -12.11873 -11.83240 -11.65381 -11.56368 -11.33140 -10.98594 -10.85431 -10.69355 -10.49451 -10.46466 -10.18157 -10.08954 -9.81507 -9.75243 -9.51947 -9.33420 -8.53134 -8.46888 -8.20678 -6.74930 -5.95950 -3.38627 0.38042 1.01737 1.65323 1.81074 1.88261 3.19615 3.30632 3.43464 3.45841 3.50371 3.52822 3.67847 4.52941 4.55548 4.57230 4.71387 4.78202 4.88181 5.02255 5.06722 5.15859 5.24884 5.33780 5.44228 5.48517 5.53062 5.65864 5.66587 5.79863 5.85749 5.87730 5.95515 6.03638 6.07450 6.15711 6.17290 6.31391 6.40040 6.42307 6.58823 6.63571 6.73425 6.79517 6.94459 7.20169 7.63917 7.79654 8.13519 8.39077 8.41098 9.06750 9.74889 10.12373 11.19899 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011711 B = 0.004030 C = 0.003387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2390.439086 B = 6945.383147 C = 8265.908528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.036 3.964 3 Si 0.883 3.117 4 H -0.286 1.286 5 H -0.303 1.303 6 H -0.271 1.271 7 C -0.266 4.266 8 H 0.072 0.928 9 N -0.603 5.603 10 C 0.152 3.848 11 C -0.167 4.167 12 C 0.132 3.868 13 N -0.569 5.569 14 C 0.606 3.394 15 O -0.536 6.536 16 C -0.039 4.039 17 C 0.079 3.921 18 N -0.282 5.282 19 N -0.168 5.168 20 C 0.160 3.840 21 C -0.110 4.110 22 C -0.098 4.098 23 C -0.120 4.120 24 C -0.102 4.102 25 C -0.110 4.110 26 N -0.191 5.191 27 C 0.080 3.920 28 C 0.134 3.866 29 H 0.262 0.738 30 H 0.050 0.950 31 H 0.036 0.964 32 H 0.059 0.941 33 H 0.081 0.919 34 H 0.065 0.935 35 H 0.083 0.917 36 H 0.217 0.783 37 H 0.143 0.857 38 H 0.136 0.864 39 H 0.130 0.870 40 H 0.134 0.866 41 H 0.140 0.860 42 H 0.098 0.902 43 H 0.065 0.935 44 H 0.060 0.940 45 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.250 -12.677 4.615 21.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.165 4.165 3 Si 0.714 3.286 4 H -0.214 1.214 5 H -0.231 1.231 6 H -0.196 1.196 7 C -0.395 4.395 8 H 0.089 0.911 9 N -0.327 5.327 10 C 0.025 3.975 11 C -0.208 4.208 12 C 0.011 3.989 13 N -0.299 5.299 14 C 0.391 3.609 15 O -0.412 6.412 16 C -0.206 4.206 17 C -0.112 4.112 18 N -0.109 5.109 19 N -0.060 5.060 20 C 0.069 3.931 21 C -0.131 4.131 22 C -0.116 4.116 23 C -0.139 4.139 24 C -0.121 4.121 25 C -0.131 4.131 26 N -0.034 5.034 27 C -0.047 4.047 28 C 0.008 3.992 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.054 0.946 32 H 0.077 0.923 33 H 0.100 0.900 34 H 0.083 0.917 35 H 0.101 0.899 36 H 0.234 0.766 37 H 0.161 0.839 38 H 0.154 0.846 39 H 0.148 0.852 40 H 0.152 0.848 41 H 0.158 0.842 42 H 0.116 0.884 43 H 0.083 0.917 44 H 0.078 0.922 45 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 16.233 -12.912 5.300 21.409 hybrid contribution -0.169 1.239 -0.753 1.460 sum 16.064 -11.673 4.547 20.372 Atomic orbital electron populations 1.69874 1.06003 1.26583 1.51789 1.25477 0.95058 0.97709 0.98222 0.86851 0.80419 0.84603 0.76762 1.21421 1.23139 1.19645 1.18738 0.85876 0.93954 1.40902 0.91075 1.43900 1.07335 1.51302 1.30143 1.20616 0.96689 0.93720 0.86477 1.21683 1.01002 0.98361 0.99766 1.20693 0.99235 0.91069 0.87875 1.47199 1.53875 1.12860 1.15939 1.16700 0.79247 0.80937 0.84035 1.90776 1.40384 1.77652 1.32386 1.23100 1.07076 0.96168 0.94246 1.25089 0.97429 0.93086 0.95557 1.77959 1.14577 1.12909 1.05477 1.48455 1.41716 1.03939 1.11847 1.17393 0.99746 0.96384 0.79624 1.21046 0.98195 0.97849 0.95969 1.21080 0.98865 0.98327 0.93371 1.21323 0.99265 0.92924 1.00348 1.21037 0.97750 0.99308 0.93982 1.20924 1.00884 0.96279 0.95024 1.74020 1.14925 1.11793 1.02681 1.22254 0.95160 1.00730 0.86517 1.22056 0.91319 0.93311 0.92482 0.92790 0.93215 0.94580 0.92270 0.90024 0.91694 0.89869 0.76643 0.83901 0.84583 0.85236 0.84835 0.84236 0.88447 0.91678 0.92178 0.95089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.91 13.97 55.49 0.78 -27.13 16 2 C 0.04 1.03 5.30 -17.43 -0.09 0.94 16 3 Si 0.88 22.30 25.03 -169.99 -4.26 18.04 16 4 H -0.29 -7.00 6.71 56.52 0.38 -6.62 16 5 H -0.30 -7.81 7.11 56.52 0.40 -7.40 16 6 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.27 -7.51 9.55 -15.06 -0.14 -7.65 16 8 H 0.07 2.25 8.06 -52.49 -0.42 1.82 16 9 N -0.60 -14.15 2.10 -172.18 -0.36 -14.52 16 10 C 0.15 3.23 4.54 -5.38 -0.02 3.21 16 11 C -0.17 -3.23 5.61 -29.28 -0.16 -3.39 16 12 C 0.13 2.16 5.69 -5.91 -0.03 2.13 16 13 N -0.57 -9.87 2.45 -177.80 -0.44 -10.31 16 14 C 0.61 11.13 7.67 -12.37 -0.09 11.03 16 15 O -0.54 -10.93 16.37 5.30 0.09 -10.84 16 16 C -0.04 -0.65 6.78 -82.98 -0.56 -1.21 16 17 C 0.08 1.14 11.92 -16.91 -0.20 0.94 16 18 N -0.28 -4.09 11.90 30.85 0.37 -3.72 16 19 N -0.17 -2.48 4.44 32.48 0.14 -2.33 16 20 C 0.16 2.00 6.74 -83.60 -0.56 1.44 16 21 C -0.11 -1.21 9.61 -39.40 -0.38 -1.59 16 22 C -0.10 -0.83 10.04 -39.61 -0.40 -1.23 16 23 C -0.12 -0.89 10.04 -39.55 -0.40 -1.29 16 24 C -0.10 -0.81 10.04 -39.61 -0.40 -1.21 16 25 C -0.11 -1.15 9.65 -39.40 -0.38 -1.53 16 26 N -0.19 -2.99 6.84 33.29 0.23 -2.76 16 27 C 0.08 1.27 4.83 -4.58 -0.02 1.25 16 28 C 0.13 2.61 6.72 -1.75 -0.01 2.60 16 29 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 30 H 0.05 1.18 3.09 -51.93 -0.16 1.02 16 31 H 0.04 0.67 7.59 -51.93 -0.39 0.28 16 32 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 33 H 0.08 1.92 7.90 -51.93 -0.41 1.51 16 34 H 0.06 0.87 8.05 -51.93 -0.42 0.46 16 35 H 0.08 1.35 7.17 -51.93 -0.37 0.98 16 36 H 0.22 2.42 8.06 -52.49 -0.42 1.99 16 37 H 0.14 1.60 7.68 -52.48 -0.40 1.20 16 38 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 39 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 40 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 41 H 0.14 1.40 7.67 -52.49 -0.40 1.00 16 42 H 0.10 1.44 4.86 -51.93 -0.25 1.19 16 43 H 0.06 0.91 7.73 -51.93 -0.40 0.51 16 44 H 0.06 1.25 7.18 -51.93 -0.37 0.88 16 45 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 362.55 15.07 5.46 5.46 Total: -1.00 -34.57 362.55 -7.56 -42.13 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: -5.70 Total: 1.55 kcal Atomic # 6 Polarization: 8.30 SS G_CDS: -3.87 Total: 4.43 kcal Atomic # 7 Polarization: -61.49 SS G_CDS: 0.72 Total: -60.77 kcal Atomic # 8 Polarization: -10.93 SS G_CDS: 0.09 Total: -10.84 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -4.26 Total: 18.04 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.57 -7.56 -42.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989636737.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 205.522 kcal (2) G-P(sol) polarization free energy of solvation -34.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 170.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.130 kcal (6) G-S(sol) free energy of system = (1) + (5) 163.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds