Wall clock time and date at job start Sat Apr 11 2020 06:20:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86800 * 120.00006 * 2 1 4 4 H 1.48496 * 109.47255 * 275.29024 * 3 2 1 5 5 H 1.48498 * 109.46939 * 35.29113 * 3 2 1 6 6 H 1.48501 * 109.46891 * 155.28789 * 3 2 1 7 7 C 1.38819 * 120.00046 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99534 * 338.65397 * 7 2 1 9 9 N 1.36934 * 119.99974 * 158.66069 * 7 2 1 10 10 C 1.43471 * 118.93835 * 320.96646 * 9 7 2 11 11 C 1.53504 * 107.88759 * 273.56082 * 10 9 7 12 12 C 1.47145 * 112.03511 * 281.58606 * 11 10 9 13 13 N 1.48210 * 110.19492 * 58.36230 * 12 11 10 14 14 C 1.34772 * 119.96593 * 102.58811 * 13 12 11 15 15 O 1.21572 * 120.00370 * 356.00878 * 14 13 12 16 16 C 1.47766 * 120.00096 * 176.00610 * 14 13 12 17 17 C 1.40602 * 126.04745 * 186.27453 * 16 14 13 18 18 N 1.31239 * 106.62629 * 179.82983 * 17 16 14 19 19 N 1.40110 * 107.17933 * 0.42703 * 18 17 16 20 20 C 1.40136 * 125.57090 * 179.75198 * 19 18 17 21 21 C 1.38855 * 120.07112 * 179.68194 * 20 19 18 22 22 C 1.38111 * 119.93384 * 179.76818 * 21 20 19 23 23 C 1.38289 * 120.06719 * 0.49007 * 22 21 20 24 24 C 1.38279 * 120.13519 * 359.78506 * 23 22 21 25 25 C 1.38112 * 120.07163 * 359.96053 * 24 23 22 26 26 N 1.28707 * 108.86223 * 359.71911 * 19 18 17 27 27 C 1.43616 * 120.06323 * 282.55900 * 13 12 11 28 28 C 1.48853 * 118.94172 * 140.94731 * 9 7 2 29 29 H 0.96995 * 119.99461 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.76384 * 33.22581 * 10 9 7 31 31 H 1.09000 * 109.75845 * 153.94723 * 10 9 7 32 32 H 1.09004 * 108.78712 * 161.00635 * 11 10 9 33 33 H 1.08997 * 109.03614 * 42.33640 * 11 10 9 34 34 H 1.09000 * 109.31810 * 298.18625 * 12 11 10 35 35 H 1.08994 * 109.32482 * 178.54664 * 12 11 10 36 36 H 1.07998 * 126.68069 * 0.02562 * 17 16 14 37 37 H 1.08008 * 120.03404 * 0.02562 * 21 20 19 38 38 H 1.07999 * 119.96760 * 180.25108 * 22 21 20 39 39 H 1.08002 * 119.93048 * 179.76092 * 23 22 21 40 40 H 1.08001 * 119.96714 * 179.97438 * 24 23 22 41 41 H 1.08000 * 120.03437 * 180.02562 * 25 24 23 42 42 H 1.09007 * 108.87693 * 211.46656 * 27 13 12 43 43 H 1.08997 * 108.87826 * 329.90616 * 27 13 12 44 44 H 1.09002 * 109.47790 * 20.65962 * 28 9 7 45 45 H 1.08990 * 109.49305 * 260.63186 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3860 2.1110 -1.3941 5 1 1.5080 2.6178 0.8089 6 1 3.5992 1.4104 0.5853 7 6 2.0103 -1.2022 -0.0005 8 1 1.5258 -2.1055 0.3395 9 7 3.3093 -1.2426 -0.4321 10 6 3.6896 -0.4480 -1.5645 11 6 3.3999 -1.2642 -2.8319 12 6 4.4340 -2.2806 -3.0823 13 7 4.5367 -3.2019 -1.9258 14 6 3.9845 -4.4295 -1.9920 15 8 3.3406 -4.7545 -2.9707 16 6 4.1616 -5.3805 -0.8751 17 6 3.7513 -6.7252 -0.8604 18 7 4.0985 -7.2111 0.3082 19 7 4.7127 -6.1735 1.0219 20 6 5.2268 -6.2711 2.3218 21 6 5.8202 -5.1674 2.9200 22 6 6.3217 -5.2655 4.2031 23 6 6.2424 -6.4641 4.8883 24 6 5.6572 -7.5665 4.2932 25 6 5.1491 -7.4734 3.0123 26 7 4.7281 -5.1161 0.2882 27 6 5.2245 -2.7878 -0.7350 28 6 4.2812 -2.1093 0.2890 29 1 -0.4849 0.8400 0.0004 30 1 3.1101 0.4750 -1.5784 31 1 4.7530 -0.2148 -1.5105 32 1 3.3555 -0.5857 -3.6838 33 1 2.4348 -1.7590 -2.7232 34 1 5.3939 -1.7879 -3.2374 35 1 4.1722 -2.8493 -3.9745 36 1 3.2510 -7.2558 -1.6570 37 1 5.8858 -4.2320 2.3840 38 1 6.7797 -4.4063 4.6705 39 1 6.6388 -6.5393 5.8902 40 1 5.5971 -8.5014 4.8306 41 1 4.6918 -8.3347 2.5482 42 1 5.6805 -3.6616 -0.2693 43 1 6.0117 -2.0854 -1.0087 44 1 3.7415 -2.8736 0.8481 45 1 4.8687 -1.5021 0.9776 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989636737.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:20 Heat of formation + Delta-G solvation = 140.938011 kcal Electronic energy + Delta-G solvation = -30440.671523 eV Core-core repulsion = 26462.163461 eV Total energy + Delta-G solvation = -3978.508063 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.89390 -41.12882 -40.08133 -38.78288 -36.19123 -34.98591 -34.42124 -33.58437 -33.17086 -31.94652 -30.61363 -29.49499 -27.53605 -25.99409 -25.46875 -24.79387 -23.76746 -22.49326 -22.43934 -21.82149 -20.46532 -19.33193 -18.67130 -18.29916 -17.63660 -17.50884 -17.22503 -17.00087 -16.37059 -16.25950 -16.00835 -15.48707 -15.29138 -15.07696 -15.03716 -14.81573 -14.49121 -14.42637 -14.03825 -13.91190 -13.84542 -13.45375 -13.29239 -12.92051 -12.73999 -12.57807 -12.48092 -12.20251 -12.13035 -11.91412 -11.87124 -11.71197 -11.57809 -11.47860 -11.33071 -11.13989 -10.61222 -10.04891 -9.72415 -9.34241 -8.69082 -8.19814 -5.59639 -0.58702 0.31043 0.52985 0.77575 0.84454 1.30538 1.40862 1.53238 1.89095 2.16287 2.41516 2.54292 2.73440 3.06640 3.35355 3.52117 3.73112 3.85536 3.88348 4.06534 4.11459 4.18307 4.20896 4.33915 4.36327 4.37547 4.41767 4.48329 4.53840 4.66376 4.69657 4.78412 4.90161 4.96799 5.01526 5.03103 5.04862 5.14276 5.24675 5.34041 5.45431 5.48054 5.55255 5.66242 5.94064 5.96744 6.12352 6.32201 6.59444 7.00851 7.05042 7.67243 8.02132 9.01007 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011711 B = 0.004030 C = 0.003387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2390.439086 B = 6945.383147 C = 8265.908528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.025 4.025 3 Si 0.960 3.040 4 H -0.271 1.271 5 H -0.312 1.312 6 H -0.252 1.252 7 C -0.255 4.255 8 H 0.014 0.986 9 N -0.613 5.613 10 C 0.144 3.856 11 C -0.157 4.157 12 C 0.131 3.869 13 N -0.573 5.573 14 C 0.600 3.400 15 O -0.567 6.567 16 C -0.069 4.069 17 C 0.078 3.922 18 N -0.289 5.289 19 N -0.161 5.161 20 C 0.116 3.884 21 C -0.123 4.123 22 C -0.098 4.098 23 C -0.107 4.107 24 C -0.098 4.098 25 C -0.118 4.118 26 N -0.191 5.191 27 C 0.087 3.913 28 C 0.134 3.866 29 H 0.262 0.738 30 H 0.029 0.971 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.024 0.976 34 H 0.112 0.888 35 H 0.081 0.919 36 H 0.239 0.761 37 H 0.135 0.865 38 H 0.161 0.839 39 H 0.166 0.834 40 H 0.165 0.835 41 H 0.137 0.863 42 H 0.110 0.890 43 H 0.101 0.899 44 H 0.033 0.967 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.227 -12.130 5.884 24.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.220 4.220 3 Si 0.788 3.212 4 H -0.198 1.198 5 H -0.241 1.241 6 H -0.176 1.176 7 C -0.385 4.385 8 H 0.032 0.968 9 N -0.337 5.337 10 C 0.018 3.982 11 C -0.197 4.197 12 C 0.010 3.990 13 N -0.302 5.302 14 C 0.386 3.614 15 O -0.446 6.446 16 C -0.234 4.234 17 C -0.112 4.112 18 N -0.117 5.117 19 N -0.054 5.054 20 C 0.026 3.974 21 C -0.144 4.144 22 C -0.117 4.117 23 C -0.125 4.125 24 C -0.116 4.116 25 C -0.139 4.139 26 N -0.037 5.037 27 C -0.038 4.038 28 C 0.009 3.991 29 H 0.071 0.929 30 H 0.046 0.954 31 H 0.098 0.902 32 H 0.103 0.897 33 H 0.043 0.957 34 H 0.130 0.870 35 H 0.100 0.900 36 H 0.255 0.745 37 H 0.153 0.847 38 H 0.179 0.821 39 H 0.183 0.817 40 H 0.182 0.818 41 H 0.155 0.845 42 H 0.128 0.872 43 H 0.119 0.881 44 H 0.051 0.949 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 20.267 -12.378 6.559 24.637 hybrid contribution -1.399 0.908 -0.963 1.926 sum 18.868 -11.469 5.596 22.779 Atomic orbital electron populations 1.70039 1.08126 1.27462 1.54461 1.26178 0.95664 1.01702 0.98493 0.85613 0.79270 0.78944 0.77366 1.19761 1.24111 1.17555 1.18478 0.88100 0.91998 1.39929 0.96839 1.43985 1.06160 1.52189 1.31361 1.20788 0.98690 0.92634 0.86099 1.21551 0.99070 0.99003 1.00094 1.20812 1.00449 0.90247 0.87463 1.47367 1.53511 1.12663 1.16639 1.17011 0.78722 0.81616 0.84089 1.90739 1.41695 1.78417 1.33700 1.22971 1.09231 0.96792 0.94420 1.25465 0.97111 0.92571 0.96033 1.77932 1.15072 1.13130 1.05534 1.48765 1.40697 1.03501 1.12421 1.17889 1.02163 0.98051 0.79258 1.21176 0.98839 0.97166 0.97186 1.21444 0.98106 0.99853 0.92270 1.21795 0.97315 0.91903 1.01487 1.21445 0.96405 1.00925 0.92857 1.21105 1.01243 0.95474 0.96094 1.73903 1.14979 1.12307 1.02493 1.22240 0.94521 1.01779 0.85300 1.22156 0.90951 0.92458 0.93531 0.92931 0.95362 0.90246 0.89697 0.95719 0.87003 0.90017 0.74495 0.84744 0.82097 0.81669 0.81772 0.84549 0.87228 0.88059 0.94871 0.92978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -62.06 13.97 21.65 0.30 -61.76 16 2 C -0.02 -1.47 5.30 84.86 0.45 -1.02 16 3 Si 0.96 46.42 25.03 68.60 1.72 48.14 16 4 H -0.27 -12.31 6.71 99.48 0.67 -11.64 16 5 H -0.31 -15.42 7.11 99.48 0.71 -14.71 16 6 H -0.25 -11.26 7.11 99.48 0.71 -10.55 16 7 C -0.25 -15.02 9.55 84.04 0.80 -14.22 16 8 H 0.01 0.95 8.06 -2.91 -0.02 0.92 16 9 N -0.61 -28.60 2.10 -698.64 -1.47 -30.07 16 10 C 0.14 5.79 4.54 87.11 0.40 6.19 16 11 C -0.16 -5.87 5.61 28.94 0.16 -5.71 16 12 C 0.13 3.99 5.69 84.23 0.48 4.47 16 13 N -0.57 -19.34 2.45 -834.71 -2.05 -21.39 16 14 C 0.60 22.55 7.67 86.76 0.67 23.22 16 15 O -0.57 -24.00 16.37 -3.94 -0.06 -24.06 16 16 C -0.07 -2.36 6.78 42.21 0.29 -2.08 16 17 C 0.08 2.33 11.92 85.36 1.02 3.34 16 18 N -0.29 -8.63 11.90 -56.32 -0.67 -9.30 16 19 N -0.16 -4.85 4.44 -51.14 -0.23 -5.08 16 20 C 0.12 2.91 6.74 38.11 0.26 3.17 16 21 C -0.12 -2.62 9.61 22.39 0.22 -2.40 16 22 C -0.10 -1.42 10.04 22.25 0.22 -1.19 16 23 C -0.11 -1.19 10.04 22.29 0.22 -0.97 16 24 C -0.10 -1.28 10.04 22.25 0.22 -1.05 16 25 C -0.12 -2.36 9.65 22.39 0.22 -2.14 16 26 N -0.19 -6.14 6.84 -48.59 -0.33 -6.47 16 27 C 0.09 2.59 4.83 87.56 0.42 3.01 16 28 C 0.13 5.10 6.72 86.57 0.58 5.68 16 29 H 0.26 16.02 8.31 -92.71 -0.77 15.25 16 30 H 0.03 1.28 3.09 -2.39 -0.01 1.27 16 31 H 0.08 2.55 7.59 -2.39 -0.02 2.53 16 32 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 33 H 0.02 1.18 7.90 -2.39 -0.02 1.16 16 34 H 0.11 2.44 8.05 -2.39 -0.02 2.42 16 35 H 0.08 2.55 7.17 -2.39 -0.02 2.54 16 36 H 0.24 5.54 8.06 -2.91 -0.02 5.52 16 37 H 0.13 2.99 7.68 -2.91 -0.02 2.97 16 38 H 0.16 1.46 8.06 -2.91 -0.02 1.43 16 39 H 0.17 0.72 8.06 -2.91 -0.02 0.69 16 40 H 0.16 1.10 8.06 -2.91 -0.02 1.08 16 41 H 0.14 2.72 7.67 -2.91 -0.02 2.69 16 42 H 0.11 3.08 4.86 -2.39 -0.01 3.06 16 43 H 0.10 2.34 7.73 -2.39 -0.02 2.32 16 44 H 0.03 1.42 7.18 -2.39 -0.02 1.41 16 45 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -81.67 362.55 4.81 -76.86 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: 0.98 Total: 14.83 kcal Atomic # 6 Polarization: 11.67 SS G_CDS: 6.62 Total: 18.29 kcal Atomic # 7 Polarization: -129.62 SS G_CDS: -4.45 Total: -134.06 kcal Atomic # 8 Polarization: -24.00 SS G_CDS: -0.06 Total: -24.06 kcal Atomic # 14 Polarization: 46.42 SS G_CDS: 1.72 Total: 48.14 kcal Total: -81.67 4.81 -76.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989636737.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 217.800 kcal (2) G-P(sol) polarization free energy of solvation -81.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 140.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds